Wall clock time and date at job start Tue Mar 31 2020 14:29:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38357 * 119.45299 * 2 1 4 4 C 1.38340 * 119.30503 * 179.97438 * 3 2 1 5 5 C 1.40077 * 118.28978 * 359.97438 * 4 3 2 6 6 C 1.47716 * 120.56952 * 180.02562 * 5 4 3 7 7 O 1.21470 * 119.99996 * 176.14492 * 6 5 4 8 8 O 1.34710 * 119.99798 * 355.87033 * 6 5 4 9 9 C 1.45201 * 116.99896 * 180.02562 * 8 6 5 10 10 C 1.53000 * 109.47138 * 179.97438 * 9 8 6 11 11 C 1.52998 * 109.47152 * 179.97438 * 10 9 8 12 12 S 1.81006 * 109.47175 * 179.97438 * 11 10 9 13 13 C 1.76199 * 99.99792 * 180.02562 * 12 11 10 14 14 H 1.07997 * 120.00622 * 0.02562 * 13 12 11 15 15 C 1.38808 * 119.99623 * 179.97438 * 13 12 11 16 16 N 1.31624 * 119.99763 * 0.02562 * 15 13 12 17 17 Si 1.86794 * 119.99893 * 179.97438 * 15 13 12 18 18 H 1.48505 * 109.46829 * 60.00334 * 17 15 13 19 19 H 1.48499 * 109.47315 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.47201 * 300.00731 * 17 15 13 21 21 C 1.39575 * 118.86692 * 0.27233 * 5 4 3 22 22 C 1.50698 * 119.72079 * 179.72329 * 21 5 4 23 23 C 1.53002 * 109.47068 * 157.02660 * 22 21 5 24 24 C 1.52999 * 109.47323 * 277.02499 * 22 21 5 25 25 N 1.31694 * 120.55712 * 359.45515 * 21 5 4 26 26 H 1.08996 * 109.47003 * 90.00300 * 1 2 3 27 27 H 1.09001 * 109.47264 * 210.00565 * 1 2 3 28 28 H 1.08998 * 109.46847 * 329.99782 * 1 2 3 29 29 H 1.07998 * 120.34748 * 359.97438 * 3 2 1 30 30 H 1.08007 * 120.85791 * 179.97438 * 4 3 2 31 31 H 1.09000 * 109.46864 * 299.99423 * 9 8 6 32 32 H 1.09000 * 109.47611 * 60.00015 * 9 8 6 33 33 H 1.09005 * 109.47204 * 299.99658 * 10 9 8 34 34 H 1.09001 * 109.47542 * 59.99833 * 10 9 8 35 35 H 1.08992 * 109.47286 * 299.99877 * 11 10 9 36 36 H 1.09000 * 109.47340 * 60.00179 * 11 10 9 37 37 H 0.97009 * 119.99796 * 179.97438 * 16 15 13 38 38 H 1.09001 * 109.47147 * 37.02791 * 22 21 5 39 39 H 1.08995 * 109.47311 * 59.99702 * 23 22 21 40 40 H 1.08997 * 109.46845 * 180.02562 * 23 22 21 41 41 H 1.09005 * 109.46729 * 300.00099 * 23 22 21 42 42 H 1.09001 * 109.47247 * 300.00231 * 24 22 21 43 43 H 1.09005 * 109.46852 * 60.00010 * 24 22 21 44 44 H 1.09006 * 109.46856 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1874 1.2048 0.0000 4 6 3.5708 1.2012 0.0005 5 6 4.2314 -0.0340 0.0016 6 6 5.7073 -0.0966 0.0028 7 8 6.2696 -1.1709 0.0745 8 8 6.4295 1.0375 -0.0812 9 6 7.8750 0.9003 -0.0751 10 6 8.5191 2.2843 -0.1776 11 6 10.0422 2.1399 -0.1705 12 16 10.8042 3.7772 -0.2925 13 6 12.5069 3.3251 -0.2641 14 1 12.7884 2.2851 -0.1891 15 6 13.4866 4.3056 -0.3391 16 7 13.1435 5.5730 -0.4310 17 14 15.2918 3.8264 -0.3082 18 1 15.5871 2.9353 -1.4590 19 1 16.1301 5.0487 -0.4002 20 1 15.5933 3.1141 0.9594 21 6 3.4715 -1.2047 -0.0037 22 6 4.1624 -2.5439 -0.0090 23 6 3.2156 -3.6084 0.5491 24 6 4.5537 -2.9103 -1.4420 25 7 2.1557 -1.1488 0.0011 26 1 -0.3633 -0.0001 -1.0276 27 1 -0.3634 -0.8899 0.5139 28 1 -0.3633 0.8900 0.5139 29 1 1.6441 2.1382 -0.0004 30 1 4.1271 2.1269 0.0001 31 1 8.1905 0.4201 0.8512 32 1 8.1859 0.2916 -0.9241 33 1 8.2036 2.7642 -1.1041 34 1 8.2084 2.8935 0.6712 35 1 10.3574 1.6602 0.7561 36 1 10.3534 1.5306 -1.0191 37 1 13.8282 6.2582 -0.4831 38 1 5.0577 -2.4933 0.6106 39 1 2.3202 -3.6591 -0.0704 40 1 3.7155 -4.5770 0.5457 41 1 2.9368 -3.3474 1.5700 42 1 3.6584 -2.9609 -2.0615 43 1 5.2283 -2.1519 -1.8395 44 1 5.0539 -3.8788 -1.4456 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000838148037.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:29:05 Heat of formation + Delta-G solvation = -76.603878 kcal Electronic energy + Delta-G solvation = -23946.756304 eV Core-core repulsion = 20375.667037 eV Total energy + Delta-G solvation = -3571.089267 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.33908 -39.90280 -37.05634 -35.59900 -33.83976 -33.18328 -32.46075 -31.76849 -28.72338 -27.25833 -26.63508 -25.51515 -24.44749 -23.35131 -21.49423 -21.28262 -20.69486 -18.10837 -17.42866 -17.25857 -16.70694 -16.37807 -16.05741 -15.21696 -14.85653 -14.81484 -14.62918 -14.42414 -14.29663 -13.81693 -13.47956 -13.22968 -13.01454 -12.80481 -12.70630 -12.60477 -12.54261 -12.21258 -12.14434 -11.57858 -11.41085 -11.37737 -11.29216 -11.13297 -10.99452 -10.92159 -10.69783 -10.36537 -10.29277 -10.17357 -9.81466 -9.62538 -9.25196 -9.08708 -8.38785 -6.58891 -6.26507 -3.97831 0.18651 0.84261 2.30628 2.43622 3.20147 3.21745 3.26292 3.36465 3.50810 3.71665 4.17935 4.18841 4.31409 4.41013 4.61091 4.89020 4.94402 5.00984 5.04420 5.07091 5.10399 5.13142 5.14311 5.15890 5.35606 5.43727 5.45276 5.51806 5.53546 5.60099 5.62901 5.71344 5.73933 5.81078 5.87409 5.91339 6.04136 6.14132 6.15608 6.27210 6.41253 6.47033 6.63918 7.53901 7.57031 7.60968 8.32788 9.19758 10.81555 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.025371 B = 0.002032 C = 0.001902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1103.341513 B =13775.201240 C =14714.237137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.161 3.839 3 C -0.194 4.194 4 C -0.011 4.011 5 C -0.187 4.187 6 C 0.512 3.488 7 O -0.495 6.495 8 O -0.351 6.351 9 C 0.074 3.926 10 C -0.098 4.098 11 C -0.114 4.114 12 S -0.124 6.124 13 C -0.519 4.519 14 H 0.073 0.927 15 C 0.071 3.929 16 N -0.869 5.869 17 Si 0.920 3.080 18 H -0.274 1.274 19 H -0.283 1.283 20 H -0.274 1.274 21 C 0.209 3.791 22 C -0.065 4.065 23 C -0.135 4.135 24 C -0.129 4.129 25 N -0.486 5.486 26 H 0.083 0.917 27 H 0.080 0.920 28 H 0.079 0.921 29 H 0.144 0.856 30 H 0.153 0.847 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.064 0.936 36 H 0.064 0.936 37 H 0.268 0.732 38 H 0.121 0.879 39 H 0.063 0.937 40 H 0.055 0.945 41 H 0.051 0.949 42 H 0.051 0.949 43 H 0.055 0.945 44 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.527 -12.603 0.673 28.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.023 3.977 3 C -0.214 4.214 4 C -0.036 4.036 5 C -0.190 4.190 6 C 0.357 3.643 7 O -0.385 6.385 8 O -0.268 6.268 9 C -0.001 4.001 10 C -0.136 4.136 11 C -0.263 4.263 12 S 0.104 5.896 13 C -0.667 4.667 14 H 0.091 0.909 15 C -0.138 4.138 16 N -0.505 5.505 17 Si 0.746 3.254 18 H -0.199 1.199 19 H -0.208 1.208 20 H -0.199 1.199 21 C 0.070 3.930 22 C -0.084 4.084 23 C -0.192 4.192 24 C -0.187 4.187 25 N -0.196 5.196 26 H 0.102 0.898 27 H 0.099 0.901 28 H 0.098 0.902 29 H 0.162 0.838 30 H 0.171 0.829 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.097 0.903 34 H 0.097 0.903 35 H 0.083 0.917 36 H 0.083 0.917 37 H 0.078 0.922 38 H 0.139 0.861 39 H 0.082 0.918 40 H 0.074 0.926 41 H 0.070 0.930 42 H 0.070 0.930 43 H 0.074 0.926 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -26.203 -12.432 0.607 29.009 hybrid contribution 2.359 -0.561 0.097 2.427 sum -23.844 -12.993 0.705 27.163 Atomic orbital electron populations 1.20811 0.88282 1.03931 1.03539 1.21642 0.97410 0.88297 0.90308 1.21971 0.94501 0.99676 1.05212 1.21991 0.94507 0.97891 0.89247 1.19983 0.90920 0.95519 1.12599 1.20818 0.87917 0.82405 0.73206 1.90761 1.72643 1.29478 1.45642 1.86508 1.22330 1.34657 1.83289 1.23314 0.74118 0.99853 1.02767 1.21292 0.93917 0.94180 1.04253 1.23175 0.95431 1.04305 1.03379 1.84646 1.04628 1.03887 1.96390 1.22652 0.89902 0.95655 1.58510 0.90873 1.25021 0.99714 0.94529 0.94503 1.70006 1.34164 0.99559 1.46745 0.86201 0.82322 0.77994 0.78893 1.19893 1.20788 1.19897 1.21498 0.88656 0.94585 0.88212 1.20642 0.99132 0.88865 0.99746 1.21698 0.99335 0.97282 1.00888 1.21653 1.00891 1.01942 0.94241 1.67515 1.08486 1.28735 1.14855 0.89820 0.90080 0.90227 0.83848 0.82945 0.90953 0.90950 0.90337 0.90344 0.91701 0.91704 0.92182 0.86145 0.91783 0.92624 0.93028 0.93023 0.92554 0.91643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.55 10.16 36.01 0.37 -0.19 16 2 C 0.16 1.36 6.78 -82.51 -0.56 0.80 16 3 C -0.19 -1.49 9.72 -39.50 -0.38 -1.88 16 4 C -0.01 -0.10 9.74 -38.85 -0.38 -0.48 16 5 C -0.19 -2.16 5.89 -104.84 -0.62 -2.78 16 6 C 0.51 6.77 7.69 34.60 0.27 7.03 16 7 O -0.50 -7.16 11.89 -19.24 -0.23 -7.39 16 8 O -0.35 -4.74 9.56 -40.52 -0.39 -5.13 16 9 C 0.07 1.04 5.48 37.16 0.20 1.24 16 10 C -0.10 -1.55 5.60 -26.73 -0.15 -1.70 16 11 C -0.11 -2.24 5.67 37.16 0.21 -2.03 16 12 S -0.12 -3.18 21.44 -107.50 -2.30 -5.48 16 13 C -0.52 -14.72 9.50 30.94 0.29 -14.43 16 14 H 0.07 2.00 7.80 -52.49 -0.41 1.59 16 15 C 0.07 2.02 5.49 -17.43 -0.10 1.92 16 16 N -0.87 -25.72 13.22 55.49 0.73 -24.99 16 17 Si 0.92 21.38 29.55 -169.99 -5.02 16.36 16 18 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 19 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 20 H -0.27 -6.24 7.11 56.52 0.40 -5.83 16 21 C 0.21 2.38 5.85 -82.15 -0.48 1.90 16 22 C -0.07 -0.71 2.37 -91.77 -0.22 -0.92 16 23 C -0.13 -1.24 8.64 37.16 0.32 -0.92 16 24 C -0.13 -1.33 8.80 37.16 0.33 -1.00 16 25 N -0.49 -5.14 9.00 -5.40 -0.05 -5.19 16 26 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.08 0.26 8.07 -51.93 -0.42 -0.16 16 29 H 0.14 0.69 8.06 -52.49 -0.42 0.27 16 30 H 0.15 1.24 7.71 -52.48 -0.40 0.84 16 31 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 34 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 35 H 0.06 1.25 8.14 -51.92 -0.42 0.83 16 36 H 0.06 1.25 8.14 -51.92 -0.42 0.83 16 37 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 38 H 0.12 1.47 5.58 -51.93 -0.29 1.18 16 39 H 0.06 0.59 7.79 -51.93 -0.40 0.19 16 40 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 41 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.06 0.65 7.05 -51.93 -0.37 0.29 16 44 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 381.43 15.07 5.75 5.75 Total: -1.00 -31.91 381.43 -9.33 -41.24 By element: Atomic # 1 Polarization: 5.19 SS G_CDS: -6.92 Total: -1.73 kcal Atomic # 6 Polarization: -12.54 SS G_CDS: -0.89 Total: -13.43 kcal Atomic # 7 Polarization: -30.86 SS G_CDS: 0.69 Total: -30.18 kcal Atomic # 8 Polarization: -11.90 SS G_CDS: -0.62 Total: -12.52 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Atomic # 16 Polarization: -3.18 SS G_CDS: -2.30 Total: -5.48 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -31.91 -9.33 -41.24 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000838148037.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.366 kcal (2) G-P(sol) polarization free energy of solvation -31.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.238 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds