Wall clock time and date at job start Tue Mar 31 2020 14:29:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38357 * 119.45299 * 2 1 4 4 C 1.38340 * 119.30503 * 179.97438 * 3 2 1 5 5 C 1.40077 * 118.28978 * 359.97438 * 4 3 2 6 6 C 1.47716 * 120.56952 * 180.02562 * 5 4 3 7 7 O 1.21470 * 119.99996 * 176.14492 * 6 5 4 8 8 O 1.34710 * 119.99798 * 355.87033 * 6 5 4 9 9 C 1.45201 * 116.99896 * 180.02562 * 8 6 5 10 10 C 1.53000 * 109.47138 * 179.97438 * 9 8 6 11 11 C 1.52998 * 109.47152 * 179.97438 * 10 9 8 12 12 S 1.81006 * 109.47175 * 179.97438 * 11 10 9 13 13 C 1.76199 * 99.99792 * 180.02562 * 12 11 10 14 14 H 1.07997 * 120.00622 * 0.02562 * 13 12 11 15 15 C 1.38808 * 119.99623 * 179.97438 * 13 12 11 16 16 N 1.31624 * 119.99763 * 0.02562 * 15 13 12 17 17 Si 1.86794 * 119.99893 * 179.97438 * 15 13 12 18 18 H 1.48505 * 109.46829 * 60.00334 * 17 15 13 19 19 H 1.48499 * 109.47315 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.47201 * 300.00731 * 17 15 13 21 21 C 1.39575 * 118.86692 * 0.27233 * 5 4 3 22 22 C 1.50698 * 119.72079 * 179.72329 * 21 5 4 23 23 C 1.53002 * 109.47068 * 157.02660 * 22 21 5 24 24 C 1.52999 * 109.47323 * 277.02499 * 22 21 5 25 25 N 1.31694 * 120.55712 * 359.45515 * 21 5 4 26 26 H 1.08996 * 109.47003 * 90.00300 * 1 2 3 27 27 H 1.09001 * 109.47264 * 210.00565 * 1 2 3 28 28 H 1.08998 * 109.46847 * 329.99782 * 1 2 3 29 29 H 1.07998 * 120.34748 * 359.97438 * 3 2 1 30 30 H 1.08007 * 120.85791 * 179.97438 * 4 3 2 31 31 H 1.09000 * 109.46864 * 299.99423 * 9 8 6 32 32 H 1.09000 * 109.47611 * 60.00015 * 9 8 6 33 33 H 1.09005 * 109.47204 * 299.99658 * 10 9 8 34 34 H 1.09001 * 109.47542 * 59.99833 * 10 9 8 35 35 H 1.08992 * 109.47286 * 299.99877 * 11 10 9 36 36 H 1.09000 * 109.47340 * 60.00179 * 11 10 9 37 37 H 0.97009 * 119.99796 * 179.97438 * 16 15 13 38 38 H 1.09001 * 109.47147 * 37.02791 * 22 21 5 39 39 H 1.08995 * 109.47311 * 59.99702 * 23 22 21 40 40 H 1.08997 * 109.46845 * 180.02562 * 23 22 21 41 41 H 1.09005 * 109.46729 * 300.00099 * 23 22 21 42 42 H 1.09001 * 109.47247 * 300.00231 * 24 22 21 43 43 H 1.09005 * 109.46852 * 60.00010 * 24 22 21 44 44 H 1.09006 * 109.46856 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1874 1.2048 0.0000 4 6 3.5708 1.2012 0.0005 5 6 4.2314 -0.0340 0.0016 6 6 5.7073 -0.0966 0.0028 7 8 6.2696 -1.1709 0.0745 8 8 6.4295 1.0375 -0.0812 9 6 7.8750 0.9003 -0.0751 10 6 8.5191 2.2843 -0.1776 11 6 10.0422 2.1399 -0.1705 12 16 10.8042 3.7772 -0.2925 13 6 12.5069 3.3251 -0.2641 14 1 12.7884 2.2851 -0.1891 15 6 13.4866 4.3056 -0.3391 16 7 13.1435 5.5730 -0.4310 17 14 15.2918 3.8264 -0.3082 18 1 15.5871 2.9353 -1.4590 19 1 16.1301 5.0487 -0.4002 20 1 15.5933 3.1141 0.9594 21 6 3.4715 -1.2047 -0.0037 22 6 4.1624 -2.5439 -0.0090 23 6 3.2156 -3.6084 0.5491 24 6 4.5537 -2.9103 -1.4420 25 7 2.1557 -1.1488 0.0011 26 1 -0.3633 -0.0001 -1.0276 27 1 -0.3634 -0.8899 0.5139 28 1 -0.3633 0.8900 0.5139 29 1 1.6441 2.1382 -0.0004 30 1 4.1271 2.1269 0.0001 31 1 8.1905 0.4201 0.8512 32 1 8.1859 0.2916 -0.9241 33 1 8.2036 2.7642 -1.1041 34 1 8.2084 2.8935 0.6712 35 1 10.3574 1.6602 0.7561 36 1 10.3534 1.5306 -1.0191 37 1 13.8282 6.2582 -0.4831 38 1 5.0577 -2.4933 0.6106 39 1 2.3202 -3.6591 -0.0704 40 1 3.7155 -4.5770 0.5457 41 1 2.9368 -3.3474 1.5700 42 1 3.6584 -2.9609 -2.0615 43 1 5.2283 -2.1519 -1.8395 44 1 5.0539 -3.8788 -1.4456 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000838148037.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:29:05 Heat of formation + Delta-G solvation = -92.708105 kcal Electronic energy + Delta-G solvation = -23947.454636 eV Core-core repulsion = 20375.667037 eV Total energy + Delta-G solvation = -3571.787599 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.18874 -40.82303 -38.07370 -36.43079 -35.00913 -34.60133 -34.09025 -32.44390 -29.41942 -28.19435 -27.96066 -27.39754 -25.30370 -24.08750 -22.80261 -22.23358 -21.48555 -19.61905 -18.93833 -18.21478 -17.79990 -17.19456 -16.90160 -16.81064 -16.26558 -16.12855 -15.68850 -15.37971 -15.12585 -14.98251 -14.57429 -14.26908 -14.03957 -13.85726 -13.77676 -13.56594 -13.21136 -13.14453 -13.02872 -12.95062 -12.92907 -12.66302 -12.46162 -12.43010 -12.34178 -12.17349 -12.06828 -11.57038 -11.52619 -11.15605 -11.14530 -10.94945 -10.53175 -10.37208 -9.96261 -8.68777 -8.38594 -6.15134 -0.59299 0.13695 1.23638 1.37337 1.39437 1.40762 1.49266 1.80698 2.26601 2.61848 2.95903 3.03249 3.26772 3.41979 3.59265 3.68996 3.83733 3.90212 3.95745 4.12029 4.15082 4.22374 4.25613 4.30599 4.31938 4.52347 4.66201 4.69615 4.72557 4.78738 4.80295 4.84683 4.92942 4.94595 5.00306 5.04885 5.12758 5.13352 5.18076 5.23951 5.38699 5.39332 5.47756 5.64317 6.16961 6.58399 6.82194 7.03805 8.70403 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.025371 B = 0.002032 C = 0.001902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1103.341513 B =13775.201240 C =14714.237137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.156 3.844 3 C -0.185 4.185 4 C -0.016 4.016 5 C -0.209 4.209 6 C 0.511 3.489 7 O -0.513 6.513 8 O -0.352 6.352 9 C 0.083 3.917 10 C -0.086 4.086 11 C -0.092 4.092 12 S -0.184 6.184 13 C -0.541 4.541 14 H 0.074 0.926 15 C 0.016 3.984 16 N -0.906 5.906 17 Si 0.993 3.007 18 H -0.265 1.265 19 H -0.275 1.275 20 H -0.265 1.265 21 C 0.197 3.803 22 C -0.067 4.067 23 C -0.126 4.126 24 C -0.124 4.124 25 N -0.501 5.501 26 H 0.096 0.904 27 H 0.078 0.922 28 H 0.104 0.896 29 H 0.178 0.822 30 H 0.163 0.837 31 H 0.076 0.924 32 H 0.075 0.925 33 H 0.079 0.921 34 H 0.080 0.920 35 H 0.068 0.932 36 H 0.068 0.932 37 H 0.272 0.728 38 H 0.103 0.897 39 H 0.063 0.937 40 H 0.066 0.934 41 H 0.047 0.953 42 H 0.055 0.945 43 H 0.038 0.962 44 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.801 -13.123 0.721 29.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.018 3.982 3 C -0.205 4.205 4 C -0.041 4.041 5 C -0.213 4.213 6 C 0.357 3.643 7 O -0.404 6.404 8 O -0.268 6.268 9 C 0.007 3.993 10 C -0.124 4.124 11 C -0.240 4.240 12 S 0.044 5.956 13 C -0.689 4.689 14 H 0.092 0.908 15 C -0.190 4.190 16 N -0.542 5.542 17 Si 0.815 3.185 18 H -0.190 1.190 19 H -0.200 1.200 20 H -0.190 1.190 21 C 0.059 3.941 22 C -0.086 4.086 23 C -0.184 4.184 24 C -0.181 4.181 25 N -0.212 5.212 26 H 0.114 0.886 27 H 0.097 0.903 28 H 0.122 0.878 29 H 0.196 0.804 30 H 0.180 0.820 31 H 0.094 0.906 32 H 0.094 0.906 33 H 0.098 0.902 34 H 0.098 0.902 35 H 0.087 0.913 36 H 0.087 0.913 37 H 0.081 0.919 38 H 0.121 0.879 39 H 0.082 0.918 40 H 0.085 0.915 41 H 0.066 0.934 42 H 0.074 0.926 43 H 0.057 0.943 44 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -27.496 -12.954 0.656 30.402 hybrid contribution 2.580 -0.412 0.086 2.614 sum -24.916 -13.365 0.742 28.284 Atomic orbital electron populations 1.20930 0.85725 1.05051 1.04595 1.22309 0.99104 0.87999 0.88746 1.22348 0.93812 1.00886 1.03405 1.22211 0.95513 0.97409 0.88939 1.19995 0.89780 0.96717 1.14771 1.21173 0.88626 0.81907 0.72579 1.90755 1.73113 1.29941 1.46619 1.86486 1.21785 1.35056 1.83509 1.23070 0.74716 0.98320 1.03163 1.21103 0.91365 0.95475 1.04454 1.23061 0.97302 1.00009 1.03671 1.84614 1.04846 1.09509 1.96594 1.23023 0.91185 0.95946 1.58757 0.90767 1.26061 1.04773 0.94378 0.93739 1.70137 1.35835 1.00716 1.47525 0.85072 0.76067 0.77998 0.79333 1.18963 1.19956 1.18970 1.21560 0.89209 0.94607 0.88734 1.20597 0.98818 0.89552 0.99631 1.21624 0.99014 0.97280 1.00435 1.21597 1.00714 1.01773 0.94052 1.67564 1.07986 1.30031 1.15575 0.88583 0.90316 0.87786 0.80416 0.81951 0.90582 0.90627 0.90205 0.90157 0.91305 0.91333 0.91900 0.87896 0.91779 0.91534 0.93427 0.92552 0.94277 0.90756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.77 10.16 71.24 0.72 -0.04 16 2 C 0.16 2.29 6.78 42.57 0.29 2.58 16 3 C -0.19 -2.37 9.72 22.32 0.22 -2.16 16 4 C -0.02 -0.27 9.74 22.74 0.22 -0.05 16 5 C -0.21 -4.77 5.89 -20.00 -0.12 -4.89 16 6 C 0.51 13.54 7.69 70.33 0.54 14.09 16 7 O -0.51 -15.10 11.89 19.93 0.24 -14.86 16 8 O -0.35 -9.31 9.56 -56.20 -0.54 -9.85 16 9 C 0.08 2.25 5.48 71.98 0.39 2.64 16 10 C -0.09 -2.65 5.60 30.59 0.17 -2.48 16 11 C -0.09 -3.56 5.67 71.98 0.41 -3.15 16 12 S -0.18 -9.62 21.44 -56.49 -1.21 -10.83 16 13 C -0.54 -30.95 9.50 67.96 0.65 -30.30 16 14 H 0.07 4.07 7.80 -2.91 -0.02 4.05 16 15 C 0.02 0.89 5.49 84.86 0.47 1.35 16 16 N -0.91 -54.20 13.22 21.65 0.29 -53.91 16 17 Si 0.99 43.63 29.55 68.60 2.03 45.66 16 18 H -0.26 -11.17 7.11 99.48 0.71 -10.47 16 19 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 20 H -0.26 -11.18 7.11 99.48 0.71 -10.47 16 21 C 0.20 4.45 5.85 42.90 0.25 4.70 16 22 C -0.07 -1.47 2.37 -11.54 -0.03 -1.49 16 23 C -0.13 -2.27 8.64 71.98 0.62 -1.65 16 24 C -0.12 -2.55 8.80 71.98 0.63 -1.92 16 25 N -0.50 -10.08 9.00 -171.01 -1.54 -11.62 16 26 H 0.10 0.51 8.14 -2.39 -0.02 0.49 16 27 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 28 H 0.10 0.27 8.07 -2.39 -0.02 0.25 16 29 H 0.18 0.99 8.06 -2.91 -0.02 0.97 16 30 H 0.16 2.40 7.71 -2.91 -0.02 2.37 16 31 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 32 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 33 H 0.08 2.47 8.14 -2.38 -0.02 2.45 16 34 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 35 H 0.07 2.62 8.14 -2.40 -0.02 2.60 16 36 H 0.07 2.61 8.14 -2.40 -0.02 2.59 16 37 H 0.27 15.13 8.31 -92.70 -0.77 14.36 16 38 H 0.10 2.60 5.58 -2.39 -0.01 2.59 16 39 H 0.06 1.15 7.79 -2.39 -0.02 1.13 16 40 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 41 H 0.05 0.88 8.14 -2.38 -0.02 0.86 16 42 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 43 H 0.04 0.92 7.05 -2.38 -0.02 0.91 16 44 H 0.07 1.35 8.14 -2.38 -0.02 1.33 16 Total: -1.00 -69.62 381.43 5.68 -63.94 By element: Atomic # 1 Polarization: 13.27 SS G_CDS: 0.98 Total: 14.25 kcal Atomic # 6 Polarization: -28.22 SS G_CDS: 5.44 Total: -22.78 kcal Atomic # 7 Polarization: -64.28 SS G_CDS: -1.25 Total: -65.53 kcal Atomic # 8 Polarization: -24.41 SS G_CDS: -0.30 Total: -24.71 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 2.03 Total: 45.66 kcal Atomic # 16 Polarization: -9.62 SS G_CDS: -1.21 Total: -10.83 kcal Total: -69.62 5.68 -63.94 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000838148037.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.772 kcal (2) G-P(sol) polarization free energy of solvation -69.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds