Wall clock time and date at job start Tue Mar 31 2020 13:31:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31551 * 1 3 3 Si 1.86802 * 120.00247 * 2 1 4 4 H 1.48504 * 109.47314 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47241 * 300.00300 * 3 2 1 6 6 H 1.48503 * 109.47081 * 60.00141 * 3 2 1 7 7 C 1.38657 * 120.00190 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00582 * 179.97438 * 7 2 1 9 9 O 1.34833 * 119.99823 * 359.97438 * 7 2 1 10 10 C 1.35746 * 117.00452 * 185.05551 * 9 7 2 11 11 C 1.38902 * 120.06596 * 354.46713 * 10 9 7 12 12 C 1.38071 * 119.93115 * 180.02562 * 11 10 9 13 13 C 1.38325 * 120.07131 * 359.97438 * 12 11 10 14 14 C 1.38279 * 120.13584 * 359.97438 * 13 12 11 15 15 C 1.50700 * 119.96591 * 180.02562 * 14 13 12 16 16 C 1.50696 * 109.46925 * 90.00550 * 15 14 13 17 17 O 1.21277 * 120.00434 * 0.02562 * 16 15 14 18 18 N 1.34783 * 120.00024 * 179.97438 * 16 15 14 19 19 C 1.47158 * 120.97822 * 0.02562 * 18 16 15 20 20 C 1.53301 * 108.38209 * 129.44077 * 19 18 16 21 21 O 1.42961 * 109.22218 * 52.30268 * 20 19 18 22 22 C 1.42964 * 114.16554 * 297.41720 * 21 20 19 23 23 H 1.08996 * 109.51374 * 302.65966 * 22 21 20 24 24 C 1.52999 * 109.51250 * 182.55434 * 22 21 20 25 25 F 1.39907 * 109.47046 * 65.00268 * 24 22 21 26 26 C 1.47148 * 120.98337 * 179.71731 * 18 16 15 27 27 C 1.38125 * 120.06740 * 0.28165 * 14 13 12 28 28 H 0.97002 * 119.99757 * 359.97438 * 1 2 3 29 29 H 1.08003 * 120.03569 * 359.97005 * 11 10 9 30 30 H 1.08007 * 119.96601 * 179.97438 * 12 11 10 31 31 H 1.07998 * 119.93588 * 179.97438 * 13 12 11 32 32 H 1.08999 * 109.47108 * 330.00547 * 15 14 13 33 33 H 1.09007 * 109.46851 * 210.00779 * 15 14 13 34 34 H 1.09002 * 109.68048 * 249.16494 * 19 18 16 35 35 H 1.08997 * 109.68481 * 9.68485 * 19 18 16 36 36 H 1.08997 * 109.50988 * 172.22227 * 20 19 18 37 37 H 1.08996 * 109.51329 * 292.32630 * 20 19 18 38 38 H 1.09001 * 109.47258 * 184.99557 * 24 22 21 39 39 H 1.08995 * 109.47388 * 305.00132 * 24 22 21 40 40 H 1.08997 * 109.67969 * 350.28148 * 26 18 16 41 41 H 1.09002 * 109.67789 * 110.83613 * 26 18 16 42 42 H 1.08001 * 120.03002 * 179.69555 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 3.7096 1.3463 -0.0006 5 1 1.8908 2.3965 -1.2125 6 1 1.8909 2.3964 1.2125 7 6 2.0088 -1.2008 -0.0005 8 1 3.0888 -1.2009 -0.0010 9 8 1.3347 -2.3685 -0.0005 10 6 2.0699 -3.5047 0.1055 11 6 3.4573 -3.4396 0.0920 12 6 4.2024 -4.5970 0.1995 13 6 3.5686 -5.8205 0.3211 14 6 2.1876 -5.8885 0.3359 15 6 1.5011 -7.2235 0.4691 16 6 1.2805 -7.5315 1.9276 17 8 1.6445 -6.7445 2.7755 18 7 0.6779 -8.6814 2.2899 19 6 0.2271 -9.6515 1.2792 20 6 0.7670 -11.0343 1.6619 21 8 0.4133 -11.3191 3.0174 22 6 0.9805 -10.4185 3.9719 23 1 2.0664 -10.4246 3.8777 24 6 0.5875 -10.8565 5.3842 25 9 1.1623 -12.1011 5.6633 26 6 0.4572 -9.0069 3.7079 27 6 1.4366 -4.7347 0.2234 28 1 -0.4850 0.8401 0.0004 29 1 3.9528 -2.4846 -0.0033 30 1 5.2812 -4.5471 0.1887 31 1 4.1535 -6.7245 0.4046 32 1 2.1248 -7.9988 0.0242 33 1 0.5403 -7.1908 -0.0448 34 1 -0.8623 -9.6765 1.2547 35 1 0.6100 -9.3656 0.2996 36 1 0.3326 -11.7889 1.0061 37 1 1.8520 -11.0430 1.5584 38 1 0.9450 -10.1214 6.1053 39 1 -0.4976 -10.9340 5.4518 40 1 0.9928 -8.2948 4.3356 41 1 -0.6087 -8.9659 3.9323 42 1 0.3580 -4.7890 0.2301 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000839802830.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:31:24 Heat of formation + Delta-G solvation = -125.810601 kcal Electronic energy + Delta-G solvation = -26683.432440 eV Core-core repulsion = 22543.996233 eV Total energy + Delta-G solvation = -4139.436207 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -47.93272 -40.62169 -39.15379 -38.41078 -36.46785 -34.97649 -33.26248 -32.33998 -31.89825 -29.26192 -28.93479 -27.73717 -25.78368 -25.10977 -23.80705 -22.06776 -21.62899 -20.90560 -19.37137 -17.66920 -17.48967 -17.39878 -16.98287 -16.57125 -16.23966 -15.71886 -15.52232 -15.44240 -15.05033 -14.92121 -14.52584 -14.37126 -14.30524 -13.71185 -13.61102 -13.41022 -13.25576 -12.77377 -12.54410 -12.34467 -12.09639 -11.84083 -11.57210 -11.55051 -11.54045 -11.27291 -11.02524 -10.84803 -10.75461 -10.60922 -10.54958 -10.41086 -9.81284 -9.31745 -8.84430 -8.82068 -8.06337 -7.20489 -6.42227 -4.01153 2.06143 2.39517 2.60457 2.68468 3.10958 3.13914 3.15604 3.20955 3.98510 4.01693 4.26789 4.35728 4.47332 4.49476 4.64245 4.69340 4.73441 4.80106 4.90606 4.95028 5.11808 5.13958 5.15773 5.28615 5.36964 5.38067 5.44180 5.54691 5.64020 5.74639 5.93123 6.10611 6.19137 6.34723 6.59514 6.65986 6.92344 7.09058 7.13150 7.26658 7.38225 7.45653 7.83599 8.02976 8.12256 9.03753 9.74322 10.76182 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.024270 B = 0.002350 C = 0.002301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.402818 B =11912.113907 C =12166.335002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.864 5.864 2 C 0.038 3.962 3 Si 0.941 3.059 4 H -0.267 1.267 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.390 4.390 8 H 0.092 0.908 9 O -0.180 6.180 10 C 0.155 3.845 11 C -0.230 4.230 12 C -0.074 4.074 13 C -0.197 4.197 14 C -0.035 4.035 15 C -0.091 4.091 16 C 0.519 3.481 17 O -0.512 6.512 18 N -0.625 5.625 19 C 0.071 3.929 20 C 0.048 3.952 21 O -0.372 6.372 22 C 0.045 3.955 23 H 0.075 0.925 24 C 0.075 3.925 25 F -0.210 7.210 26 C 0.085 3.915 27 C -0.174 4.174 28 H 0.269 0.731 29 H 0.127 0.873 30 H 0.107 0.893 31 H 0.102 0.898 32 H 0.098 0.902 33 H 0.100 0.900 34 H 0.080 0.920 35 H 0.100 0.900 36 H 0.110 0.890 37 H 0.058 0.942 38 H 0.095 0.905 39 H 0.086 0.914 40 H 0.106 0.894 41 H 0.078 0.922 42 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.993 -21.958 3.787 22.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.499 5.499 2 C -0.166 4.166 3 Si 0.766 3.234 4 H -0.191 1.191 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.467 4.467 8 H 0.109 0.891 9 O -0.083 6.083 10 C 0.102 3.898 11 C -0.249 4.249 12 C -0.093 4.093 13 C -0.216 4.216 14 C -0.036 4.036 15 C -0.131 4.131 16 C 0.308 3.692 17 O -0.386 6.386 18 N -0.362 5.362 19 C -0.052 4.052 20 C -0.029 4.029 21 O -0.290 6.290 22 C -0.014 4.014 23 H 0.093 0.907 24 C 0.019 3.981 25 F -0.191 7.191 26 C -0.038 4.038 27 C -0.194 4.194 28 H 0.079 0.921 29 H 0.144 0.856 30 H 0.125 0.875 31 H 0.120 0.880 32 H 0.116 0.884 33 H 0.119 0.881 34 H 0.098 0.902 35 H 0.118 0.882 36 H 0.128 0.872 37 H 0.077 0.923 38 H 0.113 0.887 39 H 0.105 0.895 40 H 0.124 0.876 41 H 0.096 0.904 42 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 0.662 -21.447 4.280 21.880 hybrid contribution 0.638 0.938 -0.136 1.143 sum 1.301 -20.509 4.144 20.963 Atomic orbital electron populations 1.70049 1.05947 1.27467 1.46484 1.25281 0.95841 0.98797 0.96648 0.85651 0.79144 0.80431 0.78214 1.19116 1.20177 1.20158 1.21368 0.91807 0.80820 1.52657 0.89058 1.83974 1.34269 1.11384 1.78711 1.19264 0.90252 0.87959 0.92372 1.21187 0.93840 0.98973 1.10910 1.20678 0.98389 0.92280 0.97904 1.20331 0.93238 0.97001 1.11011 1.18645 0.93244 0.91853 0.99821 1.20613 1.02586 0.97203 0.92675 1.20855 0.76429 0.79962 0.91947 1.90762 1.48748 1.46323 1.52735 1.48156 1.61412 1.20338 1.06305 1.22483 1.00875 0.89041 0.92822 1.23018 1.00147 0.96325 0.83445 1.87989 1.72980 1.52709 1.15371 1.23061 0.98774 0.89789 0.89813 0.90689 1.21943 0.99708 0.82282 0.94144 1.92793 1.86807 1.44858 1.94646 1.21986 1.02251 0.95759 0.83807 1.19928 0.99035 0.89947 1.10440 0.92136 0.85574 0.87452 0.88015 0.88380 0.88135 0.90180 0.88170 0.87202 0.92338 0.88709 0.89529 0.87595 0.90411 0.86854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.72 13.67 55.48 0.76 -24.97 16 2 C 0.04 1.07 5.49 -17.52 -0.10 0.97 16 3 Si 0.94 20.86 29.55 -169.99 -5.02 15.84 16 4 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 5 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 6 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 7 C -0.39 -11.13 9.49 30.89 0.29 -10.84 16 8 H 0.09 2.42 5.20 -52.49 -0.27 2.15 16 9 O -0.18 -5.25 9.76 0.05 0.00 -5.25 16 10 C 0.15 3.87 6.65 -39.11 -0.26 3.61 16 11 C -0.23 -5.18 9.17 -39.40 -0.36 -5.54 16 12 C -0.07 -1.42 10.04 -39.61 -0.40 -1.82 16 13 C -0.20 -3.52 9.70 -39.53 -0.38 -3.90 16 14 C -0.03 -0.63 4.37 -104.65 -0.46 -1.09 16 15 C -0.09 -1.18 4.20 -29.04 -0.12 -1.30 16 16 C 0.52 7.45 7.70 -10.98 -0.08 7.36 16 17 O -0.51 -9.80 15.50 5.56 0.09 -9.71 16 18 N -0.63 -6.69 3.03 -172.55 -0.52 -7.21 16 19 C 0.07 0.51 6.54 -3.53 -0.02 0.48 16 20 C 0.05 0.32 6.99 37.31 0.26 0.58 16 21 O -0.37 -3.42 10.38 -35.23 -0.37 -3.79 16 22 C 0.04 0.38 3.12 -26.81 -0.08 0.30 16 23 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 24 C 0.07 0.53 7.21 37.16 0.27 0.80 16 25 F -0.21 -2.12 17.35 2.25 0.04 -2.09 16 26 C 0.09 0.81 5.90 -3.77 -0.02 0.79 16 27 C -0.17 -3.80 9.64 -39.40 -0.38 -4.18 16 28 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 29 H 0.13 2.83 5.64 -52.48 -0.30 2.53 16 30 H 0.11 1.72 8.06 -52.48 -0.42 1.30 16 31 H 0.10 1.53 8.06 -52.49 -0.42 1.11 16 32 H 0.10 0.95 7.60 -51.93 -0.39 0.56 16 33 H 0.10 1.11 7.96 -51.93 -0.41 0.69 16 34 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.10 0.54 6.05 -51.93 -0.31 0.23 16 36 H 0.11 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.09 0.48 8.14 -51.93 -0.42 0.05 16 39 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.11 1.14 7.08 -51.93 -0.37 0.77 16 41 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.11 2.40 8.06 -52.49 -0.42 1.97 16 LS Contribution 355.79 15.07 5.36 5.36 Total: -1.00 -36.03 355.79 -6.94 -42.97 By element: Atomic # 1 Polarization: 8.02 SS G_CDS: -5.42 Total: 2.60 kcal Atomic # 6 Polarization: -11.92 SS G_CDS: -1.85 Total: -13.77 kcal Atomic # 7 Polarization: -32.41 SS G_CDS: 0.24 Total: -32.18 kcal Atomic # 8 Polarization: -18.47 SS G_CDS: -0.28 Total: -18.75 kcal Atomic # 9 Polarization: -2.12 SS G_CDS: 0.04 Total: -2.09 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -36.03 -6.94 -42.97 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000839802830.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.842 kcal (2) G-P(sol) polarization free energy of solvation -36.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds