Wall clock time and date at job start Tue Mar 31 2020 13:31:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31551 * 1 3 3 Si 1.86802 * 120.00247 * 2 1 4 4 H 1.48504 * 109.47314 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47241 * 300.00300 * 3 2 1 6 6 H 1.48503 * 109.47081 * 60.00141 * 3 2 1 7 7 C 1.38657 * 120.00190 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00582 * 179.97438 * 7 2 1 9 9 O 1.34833 * 119.99823 * 359.97438 * 7 2 1 10 10 C 1.35746 * 117.00452 * 185.05551 * 9 7 2 11 11 C 1.38902 * 120.06596 * 354.46713 * 10 9 7 12 12 C 1.38071 * 119.93115 * 180.02562 * 11 10 9 13 13 C 1.38325 * 120.07131 * 359.97438 * 12 11 10 14 14 C 1.38279 * 120.13584 * 359.97438 * 13 12 11 15 15 C 1.50700 * 119.96591 * 180.02562 * 14 13 12 16 16 C 1.50696 * 109.46925 * 90.00550 * 15 14 13 17 17 O 1.21277 * 120.00434 * 0.02562 * 16 15 14 18 18 N 1.34783 * 120.00024 * 179.97438 * 16 15 14 19 19 C 1.47158 * 120.97822 * 0.02562 * 18 16 15 20 20 C 1.53301 * 108.38209 * 129.44077 * 19 18 16 21 21 O 1.42961 * 109.22218 * 52.30268 * 20 19 18 22 22 C 1.42964 * 114.16554 * 297.41720 * 21 20 19 23 23 H 1.08996 * 109.51374 * 302.65966 * 22 21 20 24 24 C 1.52999 * 109.51250 * 182.55434 * 22 21 20 25 25 F 1.39907 * 109.47046 * 65.00268 * 24 22 21 26 26 C 1.47148 * 120.98337 * 179.71731 * 18 16 15 27 27 C 1.38125 * 120.06740 * 0.28165 * 14 13 12 28 28 H 0.97002 * 119.99757 * 359.97438 * 1 2 3 29 29 H 1.08003 * 120.03569 * 359.97005 * 11 10 9 30 30 H 1.08007 * 119.96601 * 179.97438 * 12 11 10 31 31 H 1.07998 * 119.93588 * 179.97438 * 13 12 11 32 32 H 1.08999 * 109.47108 * 330.00547 * 15 14 13 33 33 H 1.09007 * 109.46851 * 210.00779 * 15 14 13 34 34 H 1.09002 * 109.68048 * 249.16494 * 19 18 16 35 35 H 1.08997 * 109.68481 * 9.68485 * 19 18 16 36 36 H 1.08997 * 109.50988 * 172.22227 * 20 19 18 37 37 H 1.08996 * 109.51329 * 292.32630 * 20 19 18 38 38 H 1.09001 * 109.47258 * 184.99557 * 24 22 21 39 39 H 1.08995 * 109.47388 * 305.00132 * 24 22 21 40 40 H 1.08997 * 109.67969 * 350.28148 * 26 18 16 41 41 H 1.09002 * 109.67789 * 110.83613 * 26 18 16 42 42 H 1.08001 * 120.03002 * 179.69555 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 3.7096 1.3463 -0.0006 5 1 1.8908 2.3965 -1.2125 6 1 1.8909 2.3964 1.2125 7 6 2.0088 -1.2008 -0.0005 8 1 3.0888 -1.2009 -0.0010 9 8 1.3347 -2.3685 -0.0005 10 6 2.0699 -3.5047 0.1055 11 6 3.4573 -3.4396 0.0920 12 6 4.2024 -4.5970 0.1995 13 6 3.5686 -5.8205 0.3211 14 6 2.1876 -5.8885 0.3359 15 6 1.5011 -7.2235 0.4691 16 6 1.2805 -7.5315 1.9276 17 8 1.6445 -6.7445 2.7755 18 7 0.6779 -8.6814 2.2899 19 6 0.2271 -9.6515 1.2792 20 6 0.7670 -11.0343 1.6619 21 8 0.4133 -11.3191 3.0174 22 6 0.9805 -10.4185 3.9719 23 1 2.0664 -10.4246 3.8777 24 6 0.5875 -10.8565 5.3842 25 9 1.1623 -12.1011 5.6633 26 6 0.4572 -9.0069 3.7079 27 6 1.4366 -4.7347 0.2234 28 1 -0.4850 0.8401 0.0004 29 1 3.9528 -2.4846 -0.0033 30 1 5.2812 -4.5471 0.1887 31 1 4.1535 -6.7245 0.4046 32 1 2.1248 -7.9988 0.0242 33 1 0.5403 -7.1908 -0.0448 34 1 -0.8623 -9.6765 1.2547 35 1 0.6100 -9.3656 0.2996 36 1 0.3326 -11.7889 1.0061 37 1 1.8520 -11.0430 1.5584 38 1 0.9450 -10.1214 6.1053 39 1 -0.4976 -10.9340 5.4518 40 1 0.9928 -8.2948 4.3356 41 1 -0.6087 -8.9659 3.9323 42 1 0.3580 -4.7890 0.2301 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000839802830.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:31:24 Heat of formation + Delta-G solvation = -150.608797 kcal Electronic energy + Delta-G solvation = -26684.507770 eV Core-core repulsion = 22543.996233 eV Total energy + Delta-G solvation = -4140.511537 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -48.61756 -41.56758 -40.70003 -39.51850 -38.15806 -35.87459 -34.37475 -33.99245 -33.19810 -30.92176 -29.67719 -28.93290 -27.37771 -26.47771 -24.43465 -23.32466 -22.99632 -22.24903 -20.41574 -19.43164 -18.77050 -18.41714 -18.04791 -17.38555 -17.06711 -16.75690 -16.57858 -16.46150 -16.12870 -16.06768 -16.01573 -15.66076 -15.51074 -15.11268 -14.95241 -14.52174 -14.30964 -14.21801 -14.03181 -13.60427 -13.26434 -12.99463 -12.91540 -12.69368 -12.52671 -12.33055 -12.23820 -12.12786 -12.11976 -12.08788 -11.71623 -11.26668 -11.21048 -10.94556 -10.80263 -9.68567 -9.64432 -8.98867 -8.48136 -6.16475 0.49731 0.74491 1.33419 1.42136 1.52144 1.54610 1.79010 2.16775 2.54875 2.81713 3.12723 3.36379 3.42416 3.62461 3.67799 3.81497 3.89136 3.95680 4.08454 4.11574 4.18081 4.24922 4.29967 4.33543 4.38780 4.49908 4.56299 4.58292 4.62057 4.72778 4.76914 4.85325 4.93971 5.05096 5.12278 5.28734 5.32422 5.63741 5.71569 5.73864 6.00578 6.02113 6.17089 6.27853 6.96755 7.08760 7.78165 8.75747 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.024270 B = 0.002350 C = 0.002301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.402818 B =11912.113907 C =12166.335002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.025 4.025 3 Si 1.020 2.980 4 H -0.252 1.252 5 H -0.265 1.265 6 H -0.269 1.269 7 C -0.413 4.413 8 H 0.100 0.900 9 O -0.234 6.234 10 C 0.112 3.888 11 C -0.246 4.246 12 C -0.073 4.073 13 C -0.180 4.180 14 C -0.027 4.027 15 C -0.089 4.089 16 C 0.517 3.483 17 O -0.574 6.574 18 N -0.619 5.619 19 C 0.065 3.935 20 C 0.045 3.955 21 O -0.387 6.387 22 C 0.053 3.947 23 H 0.067 0.933 24 C 0.070 3.930 25 F -0.227 7.227 26 C 0.083 3.917 27 C -0.192 4.192 28 H 0.273 0.727 29 H 0.117 0.883 30 H 0.145 0.855 31 H 0.147 0.853 32 H 0.145 0.855 33 H 0.123 0.877 34 H 0.090 0.910 35 H 0.124 0.876 36 H 0.136 0.864 37 H 0.061 0.939 38 H 0.114 0.886 39 H 0.101 0.899 40 H 0.089 0.911 41 H 0.089 0.911 42 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.562 -24.697 3.285 25.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.222 4.222 3 Si 0.839 3.161 4 H -0.175 1.175 5 H -0.190 1.190 6 H -0.194 1.194 7 C -0.489 4.489 8 H 0.117 0.883 9 O -0.141 6.141 10 C 0.062 3.938 11 C -0.266 4.266 12 C -0.091 4.091 13 C -0.198 4.198 14 C -0.027 4.027 15 C -0.128 4.128 16 C 0.307 3.693 17 O -0.452 6.452 18 N -0.353 5.353 19 C -0.057 4.057 20 C -0.032 4.032 21 O -0.306 6.306 22 C -0.006 4.006 23 H 0.085 0.915 24 C 0.015 3.985 25 F -0.208 7.208 26 C -0.040 4.040 27 C -0.211 4.211 28 H 0.082 0.918 29 H 0.135 0.865 30 H 0.163 0.837 31 H 0.165 0.835 32 H 0.163 0.837 33 H 0.141 0.859 34 H 0.109 0.891 35 H 0.142 0.858 36 H 0.154 0.846 37 H 0.079 0.921 38 H 0.132 0.868 39 H 0.119 0.881 40 H 0.108 0.892 41 H 0.107 0.893 42 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 2.238 -24.292 3.760 24.683 hybrid contribution 0.201 1.390 0.034 1.405 sum 2.439 -22.902 3.794 23.342 Atomic orbital electron populations 1.70192 1.08029 1.28703 1.49149 1.26609 0.96896 1.02750 0.95913 0.84519 0.78194 0.74768 0.78629 1.17532 1.19031 1.19425 1.21859 0.92482 0.81491 1.53080 0.88252 1.83932 1.35923 1.12554 1.81714 1.19874 0.91664 0.87934 0.94339 1.21303 0.93151 1.00215 1.11883 1.21131 1.00226 0.91469 0.96306 1.20960 0.93473 0.98147 1.07255 1.19173 0.93752 0.92975 0.96823 1.20735 1.04278 0.95288 0.92480 1.21022 0.76114 0.80261 0.91870 1.90751 1.51777 1.48496 1.54199 1.48205 1.59733 1.19783 1.07600 1.22817 1.01697 0.88309 0.92838 1.23234 1.00582 0.96676 0.82684 1.87984 1.73180 1.52936 1.16525 1.22958 0.98162 0.88951 0.90561 0.91523 1.22150 1.00620 0.81813 0.93878 1.92756 1.87190 1.46139 1.94716 1.22047 1.02776 0.96044 0.83161 1.20205 0.99264 0.90430 1.11202 0.91846 0.86497 0.83720 0.83547 0.83719 0.85871 0.89146 0.85761 0.84584 0.92100 0.86791 0.88062 0.89223 0.89283 0.87574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -57.99 13.67 21.61 0.30 -57.70 16 2 C -0.02 -1.44 5.49 84.83 0.47 -0.97 16 3 Si 1.02 44.06 29.55 68.60 2.03 46.09 16 4 H -0.25 -10.08 7.11 99.48 0.71 -9.38 16 5 H -0.27 -10.87 7.11 99.48 0.71 -10.17 16 6 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 7 C -0.41 -24.92 9.49 67.92 0.64 -24.27 16 8 H 0.10 5.54 5.20 -2.91 -0.02 5.53 16 9 O -0.23 -14.67 9.76 -22.73 -0.22 -14.89 16 10 C 0.11 5.86 6.65 22.58 0.15 6.01 16 11 C -0.25 -11.31 9.17 22.39 0.21 -11.10 16 12 C -0.07 -2.64 10.04 22.25 0.22 -2.42 16 13 C -0.18 -5.78 9.70 22.30 0.22 -5.57 16 14 C -0.03 -0.91 4.37 -19.88 -0.09 -1.00 16 15 C -0.09 -1.97 4.20 29.10 0.12 -1.84 16 16 C 0.52 13.70 7.70 87.65 0.68 14.38 16 17 O -0.57 -21.70 15.50 -3.02 -0.05 -21.75 16 18 N -0.62 -11.65 3.03 -818.21 -2.48 -14.12 16 19 C 0.07 0.67 6.54 86.35 0.57 1.24 16 20 C 0.04 0.44 6.99 72.08 0.50 0.94 16 21 O -0.39 -6.09 10.38 -148.98 -1.55 -7.64 16 22 C 0.05 0.80 3.12 30.54 0.10 0.90 16 23 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 24 C 0.07 0.88 7.21 71.98 0.52 1.40 16 25 F -0.23 -4.29 17.35 44.97 0.78 -3.51 16 26 C 0.08 1.46 5.90 86.20 0.51 1.97 16 27 C -0.19 -8.55 9.64 22.39 0.22 -8.33 16 28 H 0.27 15.60 8.31 -92.71 -0.77 14.83 16 29 H 0.12 5.44 5.64 -2.91 -0.02 5.43 16 30 H 0.15 4.09 8.06 -2.91 -0.02 4.07 16 31 H 0.15 3.49 8.06 -2.91 -0.02 3.46 16 32 H 0.15 1.89 7.60 -2.39 -0.02 1.87 16 33 H 0.12 2.23 7.96 -2.38 -0.02 2.22 16 34 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 35 H 0.12 0.68 6.05 -2.39 -0.01 0.67 16 36 H 0.14 0.62 8.14 -2.39 -0.02 0.60 16 37 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 38 H 0.11 0.97 8.14 -2.39 -0.02 0.95 16 39 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 40 H 0.09 1.91 7.08 -2.39 -0.02 1.89 16 41 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 42 H 0.11 4.73 8.06 -2.91 -0.02 4.70 16 Total: -1.00 -86.12 355.79 4.88 -81.24 By element: Atomic # 1 Polarization: 19.91 SS G_CDS: 1.04 Total: 20.95 kcal Atomic # 6 Polarization: -33.69 SS G_CDS: 5.02 Total: -28.67 kcal Atomic # 7 Polarization: -69.64 SS G_CDS: -2.18 Total: -71.82 kcal Atomic # 8 Polarization: -42.47 SS G_CDS: -1.81 Total: -44.28 kcal Atomic # 9 Polarization: -4.29 SS G_CDS: 0.78 Total: -3.51 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 2.03 Total: 46.09 kcal Total: -86.12 4.88 -81.24 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000839802830.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.368 kcal (2) G-P(sol) polarization free energy of solvation -86.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.241 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds