Wall clock time and date at job start Tue Mar 31 2020 13:40:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31524 * 1 3 3 Si 1.86801 * 119.99817 * 2 1 4 4 H 1.48497 * 109.46912 * 270.00207 * 3 2 1 5 5 H 1.48499 * 109.47079 * 29.99914 * 3 2 1 6 6 H 1.48498 * 109.47040 * 149.99859 * 3 2 1 7 7 C 1.37876 * 119.99958 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00250 * 359.97438 * 7 2 1 9 9 C 1.50703 * 119.99827 * 180.02562 * 7 2 1 10 10 C 1.53000 * 109.47174 * 179.97438 * 9 7 2 11 11 C 1.52991 * 109.47352 * 179.97438 * 10 9 7 12 12 O 1.45199 * 109.47307 * 179.97438 * 11 10 9 13 13 C 1.34807 * 116.99920 * 179.97438 * 12 11 10 14 14 O 1.21549 * 120.00117 * 0.02562 * 13 12 11 15 15 C 1.47110 * 119.99782 * 180.02562 * 13 12 11 16 16 C 1.35294 * 123.15551 * 180.02562 * 15 13 12 17 17 S 1.70940 * 108.81774 * 179.70554 * 16 15 13 18 18 C 1.70763 * 91.14073 * 0.33919 * 17 16 15 19 19 C 1.50701 * 124.70980 * 179.91723 * 18 17 16 20 20 C 1.52996 * 109.46990 * 59.69885 * 19 18 17 21 21 C 1.53000 * 109.47328 * 180.02562 * 20 19 18 22 22 C 1.52997 * 109.47060 * 60.00126 * 21 20 19 23 23 C 1.53006 * 109.47127 * 300.00449 * 22 21 20 24 24 C 1.52997 * 109.47164 * 59.99836 * 23 22 21 25 25 N 1.28623 * 110.58079 * 359.65277 * 18 17 16 26 26 H 0.96992 * 120.00004 * 359.97438 * 1 2 3 27 27 H 1.08996 * 109.46815 * 60.00101 * 9 7 2 28 28 H 1.09000 * 109.47033 * 299.99966 * 9 7 2 29 29 H 1.09006 * 109.47217 * 59.99798 * 10 9 7 30 30 H 1.09006 * 109.46942 * 300.00327 * 10 9 7 31 31 H 1.09006 * 109.46868 * 59.99899 * 11 10 9 32 32 H 1.09000 * 109.47201 * 300.00268 * 11 10 9 33 33 H 1.07994 * 125.58532 * 359.97415 * 16 15 13 34 34 H 1.08992 * 109.47284 * 179.70432 * 19 18 17 35 35 H 1.09004 * 109.47368 * 60.00232 * 20 19 18 36 36 H 1.09001 * 109.47372 * 300.00388 * 20 19 18 37 37 H 1.09002 * 109.47398 * 180.02562 * 21 20 19 38 38 H 1.09001 * 109.47194 * 300.00476 * 21 20 19 39 39 H 1.08998 * 109.47533 * 59.99948 * 22 21 20 40 40 H 1.08996 * 109.47853 * 180.02562 * 22 21 20 41 41 H 1.09001 * 109.47002 * 299.99574 * 23 22 21 42 42 H 1.09000 * 109.47050 * 179.97438 * 23 22 21 43 43 H 1.09002 * 109.47045 * 180.02562 * 24 23 22 44 44 H 1.09001 * 109.47375 * 59.99966 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 1.4647 -2.1293 -0.0005 9 6 3.5116 -1.1940 0.0000 10 6 4.0217 -2.6365 -0.0001 11 6 5.5516 -2.6365 -0.0001 12 8 6.0356 -4.0054 0.0004 13 6 7.3721 -4.1820 -0.0002 14 8 8.1125 -3.2181 -0.0005 15 6 7.9344 -5.5414 -0.0003 16 6 9.2638 -5.7922 -0.0003 17 16 9.5057 -7.4844 0.0079 18 6 7.8204 -7.7597 0.0007 19 6 7.1732 -9.1206 0.0014 20 6 7.6056 -9.8904 1.2509 21 6 6.9490 -11.2723 1.2513 22 6 7.3818 -12.0429 0.0024 23 6 6.9495 -11.2731 -1.2472 24 6 7.6061 -9.8912 -1.2475 25 7 7.1801 -6.6442 0.0003 26 1 -0.4850 0.8400 0.0004 27 1 3.8745 -0.6808 0.8905 28 1 3.8753 -0.6796 -0.8895 29 1 3.6587 -3.1502 -0.8903 30 1 3.6579 -3.1506 0.8897 31 1 5.9149 -2.1227 0.8899 32 1 5.9149 -2.1226 -0.8901 33 1 10.0442 -5.0457 -0.0006 34 1 6.0891 -9.0074 0.0013 35 1 7.2976 -9.3412 2.1407 36 1 8.6897 -10.0036 1.2509 37 1 7.2567 -11.8206 2.1417 38 1 5.8648 -11.1595 1.2510 39 1 8.4659 -12.1558 0.0026 40 1 6.9138 -13.0273 0.0023 41 1 5.8653 -11.1603 -1.2475 42 1 7.2583 -11.8219 -2.1369 43 1 7.2977 -9.3426 -2.1376 44 1 8.6902 -10.0040 -1.2473 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000840667738.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:40:44 Heat of formation + Delta-G solvation = -98.859041 kcal Electronic energy + Delta-G solvation = -23876.425096 eV Core-core repulsion = 20304.370773 eV Total energy + Delta-G solvation = -3572.054323 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.93810 -40.67190 -39.18655 -37.90424 -35.97413 -33.92008 -33.44330 -31.66480 -30.59942 -29.65756 -27.27661 -25.23100 -24.22074 -23.49928 -22.28186 -22.07791 -21.37225 -20.56895 -19.73388 -19.03074 -17.98953 -17.83793 -17.51146 -16.60388 -16.29620 -16.16684 -15.97325 -15.43186 -15.05470 -14.98344 -14.85295 -14.69975 -14.23225 -14.00356 -13.80889 -13.49371 -13.34698 -13.14661 -13.09798 -12.88994 -12.65527 -12.29837 -12.14713 -12.09173 -12.05700 -11.79886 -11.71651 -11.46516 -11.41357 -11.39682 -11.20966 -11.16253 -10.84459 -10.79544 -10.70582 -10.01555 -8.32095 -6.37584 -0.72628 0.10365 0.40586 0.55710 1.35416 1.37124 1.49221 1.60986 1.91682 2.34229 2.75572 3.02585 3.47658 3.76474 3.82547 3.90743 3.93459 3.95149 3.97708 4.18556 4.30843 4.34010 4.35476 4.51089 4.55896 4.57505 4.59384 4.68090 4.73157 4.76564 4.90149 5.01371 5.12609 5.16491 5.17530 5.26422 5.27287 5.40227 5.40794 5.43057 5.44256 5.58673 5.59060 6.21880 6.25411 6.62456 6.69925 7.26637 8.84634 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.017851 B = 0.002254 C = 0.002053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1568.131366 B =12421.092055 C =13632.534978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C 0.004 3.996 3 Si 0.952 3.048 4 H -0.265 1.265 5 H -0.282 1.282 6 H -0.246 1.246 7 C -0.536 4.536 8 H 0.033 0.967 9 C -0.007 4.007 10 C -0.091 4.091 11 C 0.073 3.927 12 O -0.346 6.346 13 C 0.539 3.461 14 O -0.524 6.524 15 C -0.006 4.006 16 C -0.224 4.224 17 S 0.326 5.674 18 C 0.018 3.982 19 C -0.014 4.014 20 C -0.111 4.111 21 C -0.118 4.118 22 C -0.119 4.119 23 C -0.118 4.118 24 C -0.111 4.111 25 N -0.463 5.463 26 H 0.268 0.732 27 H 0.028 0.972 28 H 0.027 0.973 29 H 0.060 0.940 30 H 0.059 0.941 31 H 0.075 0.925 32 H 0.076 0.924 33 H 0.208 0.792 34 H 0.086 0.914 35 H 0.060 0.940 36 H 0.083 0.917 37 H 0.077 0.923 38 H 0.057 0.943 39 H 0.074 0.926 40 H 0.070 0.930 41 H 0.057 0.943 42 H 0.077 0.923 43 H 0.060 0.940 44 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.497 -26.890 0.027 37.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.193 4.193 3 Si 0.775 3.225 4 H -0.189 1.189 5 H -0.207 1.207 6 H -0.169 1.169 7 C -0.574 4.574 8 H 0.051 0.949 9 C -0.045 4.045 10 C -0.129 4.129 11 C -0.001 4.001 12 O -0.262 6.262 13 C 0.382 3.618 14 O -0.415 6.415 15 C -0.139 4.139 16 C -0.367 4.367 17 S 0.585 5.415 18 C -0.262 4.262 19 C -0.036 4.036 20 C -0.150 4.150 21 C -0.155 4.155 22 C -0.157 4.157 23 C -0.155 4.155 24 C -0.150 4.150 25 N -0.178 5.178 26 H 0.077 0.923 27 H 0.046 0.954 28 H 0.045 0.955 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.094 0.906 32 H 0.094 0.906 33 H 0.224 0.776 34 H 0.105 0.895 35 H 0.079 0.921 36 H 0.102 0.898 37 H 0.096 0.904 38 H 0.076 0.924 39 H 0.093 0.907 40 H 0.088 0.912 41 H 0.076 0.924 42 H 0.096 0.904 43 H 0.079 0.921 44 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 26.804 -27.098 0.039 38.115 hybrid contribution -1.107 2.326 -0.026 2.576 sum 25.697 -24.771 0.013 35.693 Atomic orbital electron populations 1.70065 1.08300 1.28326 1.52276 1.26036 0.95699 1.03619 0.93921 0.85628 0.79509 0.77977 0.79384 1.18947 1.20715 1.16910 1.21382 0.91654 0.93364 1.50967 0.94888 1.19439 0.94364 0.93278 0.97369 1.21314 0.90607 0.98651 1.02343 1.23313 0.95331 0.78520 1.02916 1.86675 1.23086 1.33491 1.82900 1.20321 0.80968 0.88372 0.72168 1.90833 1.60960 1.41989 1.47677 1.19197 0.90225 0.90791 1.13677 1.27072 0.99659 1.05552 1.04412 1.82336 1.05019 0.93032 1.61097 1.27699 0.96608 0.98421 1.03462 1.20041 1.00438 0.84825 0.98261 1.21691 1.01765 0.96168 0.95363 1.21526 1.00408 0.94525 0.99077 1.21572 1.01942 0.98621 0.93536 1.21529 1.00407 0.94535 0.99073 1.21691 1.01765 0.96153 0.95367 1.66980 1.38439 0.97514 1.14850 0.92326 0.95408 0.95494 0.92164 0.92178 0.90648 0.90561 0.77552 0.89548 0.92113 0.89848 0.90404 0.92373 0.90716 0.91158 0.92369 0.90407 0.92121 0.89838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.74 13.96 21.45 0.30 -60.44 16 2 C 0.00 0.25 5.47 84.65 0.46 0.72 16 3 Si 0.95 45.02 27.47 68.60 1.88 46.91 16 4 H -0.26 -11.97 7.11 99.48 0.71 -11.26 16 5 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 6 H -0.25 -10.77 6.54 99.48 0.65 -10.12 16 7 C -0.54 -31.95 9.66 25.60 0.25 -31.70 16 8 H 0.03 2.16 7.99 -2.91 -0.02 2.14 16 9 C -0.01 -0.34 4.04 29.85 0.12 -0.22 16 10 C -0.09 -3.90 5.53 30.59 0.17 -3.73 16 11 C 0.07 2.70 5.48 71.98 0.39 3.09 16 12 O -0.35 -13.04 10.16 -57.18 -0.58 -13.62 16 13 C 0.54 18.49 7.94 70.15 0.56 19.05 16 14 O -0.52 -18.96 16.50 19.68 0.32 -18.63 16 15 C -0.01 -0.16 6.71 40.52 0.27 0.12 16 16 C -0.22 -4.32 10.62 67.14 0.71 -3.60 16 17 S 0.33 3.88 22.22 -56.49 -1.26 2.62 16 18 C 0.02 0.33 6.00 88.58 0.53 0.86 16 19 C -0.01 -0.19 2.61 -11.54 -0.03 -0.22 16 20 C -0.11 -1.14 5.09 30.59 0.16 -0.98 16 21 C -0.12 -0.99 5.92 30.59 0.18 -0.80 16 22 C -0.12 -0.78 5.92 30.60 0.18 -0.60 16 23 C -0.12 -0.99 5.92 30.60 0.18 -0.81 16 24 C -0.11 -1.14 5.10 30.59 0.16 -0.98 16 25 N -0.46 -12.85 10.60 -180.91 -1.92 -14.77 16 26 H 0.27 15.89 8.31 -92.71 -0.77 15.12 16 27 H 0.03 1.30 7.20 -2.39 -0.02 1.28 16 28 H 0.03 1.24 7.57 -2.39 -0.02 1.22 16 29 H 0.06 2.61 8.14 -2.38 -0.02 2.59 16 30 H 0.06 2.61 8.14 -2.38 -0.02 2.59 16 31 H 0.08 2.68 8.14 -2.38 -0.02 2.66 16 32 H 0.08 2.70 8.14 -2.39 -0.02 2.68 16 33 H 0.21 3.20 8.03 -2.91 -0.02 3.18 16 34 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 35 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 36 H 0.08 0.56 7.90 -2.39 -0.02 0.54 16 37 H 0.08 0.51 8.14 -2.39 -0.02 0.49 16 38 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 39 H 0.07 0.34 8.14 -2.39 -0.02 0.33 16 40 H 0.07 0.40 8.14 -2.39 -0.02 0.39 16 41 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 42 H 0.08 0.51 8.14 -2.39 -0.02 0.49 16 43 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 44 H 0.08 0.56 7.92 -2.39 -0.02 0.54 16 Total: -1.00 -74.95 374.43 3.97 -70.98 By element: Atomic # 1 Polarization: 5.86 SS G_CDS: 0.92 Total: 6.78 kcal Atomic # 6 Polarization: -24.12 SS G_CDS: 4.29 Total: -19.83 kcal Atomic # 7 Polarization: -73.59 SS G_CDS: -1.62 Total: -75.21 kcal Atomic # 8 Polarization: -32.00 SS G_CDS: -0.26 Total: -32.25 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 1.88 Total: 46.91 kcal Atomic # 16 Polarization: 3.88 SS G_CDS: -1.26 Total: 2.62 kcal Total: -74.95 3.97 -70.98 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000840667738.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.880 kcal (2) G-P(sol) polarization free energy of solvation -74.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds