Wall clock time and date at job start Tue Mar 31 2020 13:58:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38346 * 119.85591 * 2 1 4 4 C 1.37972 * 120.14389 * 180.02562 * 3 2 1 5 5 C 1.39540 * 119.85494 * 359.97438 * 4 3 2 6 6 C 1.47809 * 120.13944 * 180.02562 * 5 4 3 7 7 C 1.32564 * 120.00152 * 179.97438 * 6 5 4 8 8 S 1.76199 * 120.00228 * 180.02562 * 7 6 5 9 9 O 1.42096 * 106.40321 * 1.45638 * 8 7 6 10 10 O 1.42108 * 106.39883 * 228.53647 * 8 7 6 11 11 N 1.65597 * 107.22117 * 114.99797 * 8 7 6 12 12 C 1.46499 * 119.99926 * 64.72196 * 11 8 7 13 13 C 1.53004 * 109.47094 * 165.27799 * 12 11 8 14 14 C 1.52999 * 109.47078 * 299.99903 * 13 12 11 15 15 C 1.53002 * 109.46979 * 60.00091 * 13 12 11 16 16 C 1.50701 * 109.47038 * 179.97438 * 13 12 11 17 17 H 1.07999 * 120.00406 * 0.02562 * 16 13 12 18 18 C 1.37879 * 120.00112 * 179.97438 * 16 13 12 19 19 N 1.31520 * 119.99790 * 0.02562 * 18 16 13 20 20 Si 1.86795 * 120.00215 * 180.02562 * 18 16 13 21 21 H 1.48495 * 109.47263 * 60.00503 * 20 18 16 22 22 H 1.48501 * 109.47068 * 180.02562 * 20 18 16 23 23 H 1.48507 * 109.47296 * 300.00346 * 20 18 16 24 24 C 1.39537 * 119.71604 * 0.27099 * 5 4 3 25 25 C 1.37973 * 119.85575 * 359.45070 * 24 5 4 26 26 H 1.09000 * 109.46611 * 90.00646 * 1 2 3 27 27 H 1.09006 * 109.46545 * 210.00195 * 1 2 3 28 28 H 1.08992 * 109.47439 * 330.00321 * 1 2 3 29 29 H 1.08001 * 119.92791 * 359.97438 * 3 2 1 30 30 H 1.07998 * 120.07236 * 179.97438 * 4 3 2 31 31 H 1.08001 * 120.00005 * 0.02562 * 6 5 4 32 32 H 1.08004 * 119.99375 * 359.97438 * 7 6 5 33 33 H 0.97001 * 120.00224 * 245.00409 * 11 8 7 34 34 H 1.09007 * 109.47241 * 285.27714 * 12 11 8 35 35 H 1.08995 * 109.47308 * 45.27753 * 12 11 8 36 36 H 1.09005 * 109.46768 * 59.99994 * 14 13 12 37 37 H 1.08998 * 109.46906 * 179.97438 * 14 13 12 38 38 H 1.08995 * 109.47092 * 299.99904 * 14 13 12 39 39 H 1.08998 * 109.47073 * 60.00210 * 15 13 12 40 40 H 1.09001 * 109.46733 * 180.02562 * 15 13 12 41 41 H 1.08996 * 109.47023 * 299.99622 * 15 13 12 42 42 H 0.96996 * 120.00150 * 179.97438 * 19 18 16 43 43 H 1.08002 * 120.06505 * 179.72698 * 24 5 4 44 44 H 1.08002 * 119.92886 * 180.27089 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1957 1.1998 0.0000 4 6 3.5754 1.2068 -0.0005 5 6 4.2761 0.0001 -0.0005 6 6 5.7542 0.0002 -0.0005 7 6 6.4171 -1.1478 0.0000 8 16 8.1791 -1.1477 0.0007 9 8 8.5803 0.2150 0.0352 10 8 8.5808 -2.0506 -1.0206 11 7 8.6689 -1.8158 1.4346 12 6 8.3682 -3.2190 1.7294 13 6 9.2220 -3.6863 2.9100 14 6 10.7036 -3.5459 2.5550 15 6 8.9081 -2.8286 4.1375 16 6 8.9122 -5.1295 3.2137 17 1 8.1800 -5.6605 2.6235 18 6 9.5644 -5.7725 4.2444 19 7 10.4564 -5.1261 4.9628 20 14 9.1810 -7.5616 4.6204 21 1 9.4852 -8.3940 3.4289 22 1 10.0096 -8.0151 5.7663 23 1 7.7430 -7.6978 4.9653 24 6 3.5755 -1.2066 -0.0057 25 6 2.1958 -1.1998 0.0007 26 1 -0.3632 -0.0001 -1.0277 27 1 -0.3633 -0.8900 0.5139 28 1 -0.3634 0.8899 0.5137 29 1 1.6522 2.1331 -0.0004 30 1 4.1119 2.1441 -0.0010 31 1 6.2942 0.9355 -0.0001 32 1 5.8771 -2.0831 0.0008 33 1 9.1512 -1.2770 2.0810 34 1 7.3126 -3.3190 1.9823 35 1 8.5918 -3.8300 0.8550 36 1 10.9272 -2.5019 2.3356 37 1 11.3118 -3.8784 3.3962 38 1 10.9272 -4.1569 1.6805 39 1 7.8526 -2.9287 4.3903 40 1 9.5167 -3.1613 4.9783 41 1 9.1318 -1.7847 3.9181 42 1 10.9150 -5.5782 5.6882 43 1 4.1121 -2.1439 -0.0102 44 1 1.6523 -2.1331 0.0011 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000841542401.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:58:57 Heat of formation + Delta-G solvation = -45.762546 kcal Electronic energy + Delta-G solvation = -24659.474031 eV Core-core repulsion = 21089.722145 eV Total energy + Delta-G solvation = -3569.751887 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.72298 -37.06383 -36.72971 -35.57562 -35.13555 -33.19988 -31.73557 -31.17812 -30.52307 -27.09685 -25.67718 -25.52574 -24.49825 -23.37638 -22.63644 -20.56251 -19.04360 -18.61615 -17.74128 -16.97328 -16.41735 -15.74708 -15.57767 -15.39584 -15.19220 -14.70452 -14.17170 -14.06339 -13.87742 -13.66920 -13.38092 -13.07695 -12.82749 -12.72981 -12.40779 -12.22990 -11.87659 -11.81255 -11.67723 -11.66596 -11.47206 -11.23532 -11.10145 -10.93023 -10.77812 -10.69900 -10.67281 -10.37851 -10.16322 -9.63807 -9.32304 -9.27072 -8.83282 -8.76312 -8.59611 -8.35855 -6.00519 -4.11507 0.28071 0.78079 1.10267 1.87614 3.29451 3.34520 3.36236 3.42698 3.55156 3.94646 4.38475 4.39876 4.43759 4.59088 4.67311 4.75110 4.90417 5.05177 5.10454 5.21745 5.25850 5.32123 5.42605 5.67479 5.72495 5.79935 5.83927 5.92989 6.07036 6.19835 6.24542 6.41444 6.46906 6.51357 6.64472 6.78177 6.93100 7.02508 7.08403 7.36717 7.54995 7.60998 7.71099 8.05261 8.16611 8.40657 8.88599 9.54149 11.00582 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.013385 B = 0.003105 C = 0.002685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2091.449311 B = 9015.515039 C =10427.696448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.072 4.072 3 C -0.128 4.128 4 C -0.087 4.087 5 C -0.095 4.095 6 C 0.043 3.957 7 C -0.740 4.740 8 S 2.684 3.316 9 O -0.979 6.979 10 O -0.962 6.962 11 N -1.106 6.106 12 C 0.126 3.874 13 C 0.064 3.936 14 C -0.132 4.132 15 C -0.132 4.132 16 C -0.510 4.510 17 H 0.057 0.943 18 C 0.067 3.933 19 N -0.884 5.884 20 Si 0.893 3.107 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.278 1.278 24 C -0.084 4.084 25 C -0.126 4.126 26 H 0.072 0.928 27 H 0.068 0.932 28 H 0.068 0.932 29 H 0.126 0.874 30 H 0.130 0.870 31 H 0.143 0.857 32 H 0.160 0.840 33 H 0.417 0.583 34 H 0.050 0.950 35 H 0.068 0.932 36 H 0.010 0.990 37 H 0.084 0.916 38 H 0.028 0.972 39 H 0.026 0.974 40 H 0.085 0.915 41 H 0.009 0.991 42 H 0.260 0.740 43 H 0.131 0.869 44 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.911 11.787 -8.032 21.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.072 4.072 3 C -0.146 4.146 4 C -0.105 4.105 5 C -0.097 4.097 6 C 0.023 3.977 7 C -0.845 4.845 8 S 2.774 3.226 9 O -0.969 6.969 10 O -0.952 6.952 11 N -0.869 5.869 12 C 0.001 3.999 13 C 0.062 3.938 14 C -0.190 4.190 15 C -0.190 4.190 16 C -0.548 4.548 17 H 0.075 0.925 18 C -0.135 4.135 19 N -0.523 5.523 20 Si 0.721 3.279 21 H -0.203 1.203 22 H -0.214 1.214 23 H -0.204 1.204 24 C -0.102 4.102 25 C -0.144 4.144 26 H 0.091 0.909 27 H 0.087 0.913 28 H 0.087 0.913 29 H 0.144 0.856 30 H 0.148 0.852 31 H 0.161 0.839 32 H 0.178 0.822 33 H 0.254 0.746 34 H 0.069 0.931 35 H 0.086 0.914 36 H 0.029 0.971 37 H 0.102 0.898 38 H 0.047 0.953 39 H 0.045 0.955 40 H 0.104 0.896 41 H 0.028 0.972 42 H 0.071 0.929 43 H 0.149 0.851 44 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -15.360 11.921 -8.675 21.290 hybrid contribution -0.791 -1.039 0.850 1.558 sum -16.151 10.882 -7.825 20.988 Atomic orbital electron populations 1.20849 0.90964 1.03074 1.02530 1.20122 0.96331 0.93206 0.97569 1.21000 0.93996 0.97727 1.01894 1.21379 0.94310 0.97372 0.97459 1.19216 0.92886 0.93787 1.03785 1.21992 0.92640 0.98228 0.84836 1.34073 1.28902 1.05350 1.16161 1.01934 0.74163 0.72894 0.73618 1.93541 1.81792 1.34698 1.86870 1.93594 1.80619 1.65229 1.55728 1.55423 1.71542 1.21720 1.38227 1.21683 0.99372 0.77655 1.01175 1.18254 0.91592 0.94868 0.89095 1.21822 0.99425 0.96381 1.01395 1.21838 0.99921 0.95093 1.02130 1.20980 1.23031 0.95169 1.15662 0.92490 1.24885 0.94843 0.97874 0.95879 1.69803 1.25923 1.36185 1.20364 0.86650 0.78235 0.85208 0.77821 1.20260 1.21367 1.20369 1.21473 0.94239 0.97916 0.96602 1.21047 0.93988 0.97867 1.01471 0.90894 0.91264 0.91333 0.85595 0.85172 0.83894 0.82213 0.74627 0.93126 0.91357 0.97063 0.89765 0.95316 0.95471 0.89600 0.97240 0.92941 0.85094 0.85506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.70 10.01 36.01 0.36 -0.34 16 2 C -0.07 -0.62 5.89 -104.54 -0.62 -1.24 16 3 C -0.13 -1.09 9.68 -39.64 -0.38 -1.47 16 4 C -0.09 -0.83 9.79 -39.19 -0.38 -1.21 16 5 C -0.10 -1.08 5.87 -105.01 -0.62 -1.70 16 6 C 0.04 0.52 9.42 -37.58 -0.35 0.17 16 7 C -0.74 -9.83 9.71 28.82 0.28 -9.55 16 8 S 2.68 42.29 5.89 -107.50 -0.63 41.65 16 9 O -0.98 -16.55 16.89 -57.17 -0.97 -17.52 16 10 O -0.96 -18.32 17.50 -57.17 -1.00 -19.32 16 11 N -1.11 -18.58 5.33 -10.61 -0.06 -18.64 16 12 C 0.13 2.45 5.05 -4.04 -0.02 2.43 16 13 C 0.06 1.46 0.51 -155.66 -0.08 1.38 16 14 C -0.13 -3.07 8.08 37.16 0.30 -2.77 16 15 C -0.13 -2.93 8.08 37.16 0.30 -2.63 16 16 C -0.51 -13.02 8.01 -34.44 -0.28 -13.30 16 17 H 0.06 1.43 7.74 -52.49 -0.41 1.02 16 18 C 0.07 1.73 5.15 -17.82 -0.09 1.64 16 19 N -0.88 -23.52 9.35 55.43 0.52 -23.00 16 20 Si 0.89 20.42 29.54 -169.99 -5.02 15.40 16 21 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 22 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 23 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 24 C -0.08 -0.93 9.40 -39.19 -0.37 -1.30 16 25 C -0.13 -1.20 9.68 -39.64 -0.38 -1.58 16 26 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.07 0.37 8.08 -51.93 -0.42 -0.05 16 28 H 0.07 0.34 8.08 -51.93 -0.42 -0.08 16 29 H 0.13 0.77 8.06 -52.49 -0.42 0.35 16 30 H 0.13 0.95 8.06 -52.49 -0.42 0.53 16 31 H 0.14 1.55 7.21 -52.49 -0.38 1.17 16 32 H 0.16 1.96 6.04 -52.48 -0.32 1.65 16 33 H 0.42 6.73 6.47 -34.47 -0.22 6.50 16 34 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 35 H 0.07 1.36 7.76 -51.93 -0.40 0.95 16 36 H 0.01 0.22 7.20 -51.93 -0.37 -0.16 16 37 H 0.08 2.14 6.07 -51.93 -0.32 1.82 16 38 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 39 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 40 H 0.09 2.13 6.07 -51.93 -0.32 1.81 16 41 H 0.01 0.17 6.60 -51.93 -0.34 -0.17 16 42 H 0.26 6.72 8.31 -40.82 -0.34 6.38 16 43 H 0.13 1.36 6.17 -52.49 -0.32 1.04 16 44 H 0.13 0.97 8.06 -52.49 -0.42 0.55 16 LS Contribution 368.70 15.07 5.56 5.56 Total: -1.00 -30.98 368.70 -10.27 -41.25 By element: Atomic # 1 Polarization: 12.42 SS G_CDS: -6.33 Total: 6.09 kcal Atomic # 6 Polarization: -29.14 SS G_CDS: -2.33 Total: -31.47 kcal Atomic # 7 Polarization: -42.10 SS G_CDS: 0.46 Total: -41.64 kcal Atomic # 8 Polarization: -34.87 SS G_CDS: -1.97 Total: -36.84 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.40 kcal Atomic # 16 Polarization: 42.29 SS G_CDS: -0.63 Total: 41.65 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -30.98 -10.27 -41.25 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841542401.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.514 kcal (2) G-P(sol) polarization free energy of solvation -30.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds