Wall clock time and date at job start Tue Mar 31 2020 13:58:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38346 * 119.85591 * 2 1 4 4 C 1.37972 * 120.14389 * 180.02562 * 3 2 1 5 5 C 1.39540 * 119.85494 * 359.97438 * 4 3 2 6 6 C 1.47809 * 120.13944 * 180.02562 * 5 4 3 7 7 C 1.32564 * 120.00152 * 179.97438 * 6 5 4 8 8 S 1.76199 * 120.00228 * 180.02562 * 7 6 5 9 9 O 1.42096 * 106.40321 * 1.45638 * 8 7 6 10 10 O 1.42108 * 106.39883 * 228.53647 * 8 7 6 11 11 N 1.65597 * 107.22117 * 114.99797 * 8 7 6 12 12 C 1.46499 * 119.99926 * 64.72196 * 11 8 7 13 13 C 1.53004 * 109.47094 * 165.27799 * 12 11 8 14 14 C 1.52999 * 109.47078 * 299.99903 * 13 12 11 15 15 C 1.53002 * 109.46979 * 60.00091 * 13 12 11 16 16 C 1.50701 * 109.47038 * 179.97438 * 13 12 11 17 17 H 1.07999 * 120.00406 * 0.02562 * 16 13 12 18 18 C 1.37879 * 120.00112 * 179.97438 * 16 13 12 19 19 N 1.31520 * 119.99790 * 0.02562 * 18 16 13 20 20 Si 1.86795 * 120.00215 * 180.02562 * 18 16 13 21 21 H 1.48495 * 109.47263 * 60.00503 * 20 18 16 22 22 H 1.48501 * 109.47068 * 180.02562 * 20 18 16 23 23 H 1.48507 * 109.47296 * 300.00346 * 20 18 16 24 24 C 1.39537 * 119.71604 * 0.27099 * 5 4 3 25 25 C 1.37973 * 119.85575 * 359.45070 * 24 5 4 26 26 H 1.09000 * 109.46611 * 90.00646 * 1 2 3 27 27 H 1.09006 * 109.46545 * 210.00195 * 1 2 3 28 28 H 1.08992 * 109.47439 * 330.00321 * 1 2 3 29 29 H 1.08001 * 119.92791 * 359.97438 * 3 2 1 30 30 H 1.07998 * 120.07236 * 179.97438 * 4 3 2 31 31 H 1.08001 * 120.00005 * 0.02562 * 6 5 4 32 32 H 1.08004 * 119.99375 * 359.97438 * 7 6 5 33 33 H 0.97001 * 120.00224 * 245.00409 * 11 8 7 34 34 H 1.09007 * 109.47241 * 285.27714 * 12 11 8 35 35 H 1.08995 * 109.47308 * 45.27753 * 12 11 8 36 36 H 1.09005 * 109.46768 * 59.99994 * 14 13 12 37 37 H 1.08998 * 109.46906 * 179.97438 * 14 13 12 38 38 H 1.08995 * 109.47092 * 299.99904 * 14 13 12 39 39 H 1.08998 * 109.47073 * 60.00210 * 15 13 12 40 40 H 1.09001 * 109.46733 * 180.02562 * 15 13 12 41 41 H 1.08996 * 109.47023 * 299.99622 * 15 13 12 42 42 H 0.96996 * 120.00150 * 179.97438 * 19 18 16 43 43 H 1.08002 * 120.06505 * 179.72698 * 24 5 4 44 44 H 1.08002 * 119.92886 * 180.27089 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1957 1.1998 0.0000 4 6 3.5754 1.2068 -0.0005 5 6 4.2761 0.0001 -0.0005 6 6 5.7542 0.0002 -0.0005 7 6 6.4171 -1.1478 0.0000 8 16 8.1791 -1.1477 0.0007 9 8 8.5803 0.2150 0.0352 10 8 8.5808 -2.0506 -1.0206 11 7 8.6689 -1.8158 1.4346 12 6 8.3682 -3.2190 1.7294 13 6 9.2220 -3.6863 2.9100 14 6 10.7036 -3.5459 2.5550 15 6 8.9081 -2.8286 4.1375 16 6 8.9122 -5.1295 3.2137 17 1 8.1800 -5.6605 2.6235 18 6 9.5644 -5.7725 4.2444 19 7 10.4564 -5.1261 4.9628 20 14 9.1810 -7.5616 4.6204 21 1 9.4852 -8.3940 3.4289 22 1 10.0096 -8.0151 5.7663 23 1 7.7430 -7.6978 4.9653 24 6 3.5755 -1.2066 -0.0057 25 6 2.1958 -1.1998 0.0007 26 1 -0.3632 -0.0001 -1.0277 27 1 -0.3633 -0.8900 0.5139 28 1 -0.3634 0.8899 0.5137 29 1 1.6522 2.1331 -0.0004 30 1 4.1119 2.1441 -0.0010 31 1 6.2942 0.9355 -0.0001 32 1 5.8771 -2.0831 0.0008 33 1 9.1512 -1.2770 2.0810 34 1 7.3126 -3.3190 1.9823 35 1 8.5918 -3.8300 0.8550 36 1 10.9272 -2.5019 2.3356 37 1 11.3118 -3.8784 3.3962 38 1 10.9272 -4.1569 1.6805 39 1 7.8526 -2.9287 4.3903 40 1 9.5167 -3.1613 4.9783 41 1 9.1318 -1.7847 3.9181 42 1 10.9150 -5.5782 5.6882 43 1 4.1121 -2.1439 -0.0102 44 1 1.6523 -2.1331 0.0011 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000841542401.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:58:56 Heat of formation + Delta-G solvation = -64.058431 kcal Electronic energy + Delta-G solvation = -24660.267400 eV Core-core repulsion = 21089.722145 eV Total energy + Delta-G solvation = -3570.545256 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.42770 -38.64496 -38.17915 -36.92482 -35.97781 -34.90800 -32.45302 -32.31295 -31.89094 -27.77860 -27.49985 -27.36891 -26.22004 -24.14057 -23.39964 -21.42593 -20.74375 -19.93980 -18.94831 -18.17455 -17.59685 -17.35492 -16.90946 -16.51778 -16.15483 -15.94059 -15.47006 -15.09752 -14.84658 -14.72366 -14.58598 -14.32760 -14.02847 -13.67767 -13.40222 -13.35990 -13.26847 -13.19483 -13.09056 -12.95965 -12.88687 -12.70352 -12.53171 -12.41457 -12.24022 -12.07163 -11.93633 -11.79105 -11.61702 -11.43758 -11.08585 -10.65503 -10.38406 -10.18614 -9.97311 -9.37791 -7.96802 -6.13141 -0.64281 -0.40572 0.40404 1.02535 1.47022 1.48563 1.54412 2.16970 2.49792 2.71555 2.82166 3.26818 3.42466 3.64957 3.77962 3.97901 4.01771 4.09572 4.27145 4.36353 4.42050 4.59409 4.72652 4.77027 4.79940 4.81388 4.84357 4.84845 5.04586 5.10941 5.12303 5.14624 5.23645 5.26802 5.28701 5.36857 5.54318 5.58003 5.60615 5.72331 5.73159 5.97013 6.13244 6.21564 6.30822 6.48683 6.93798 7.54569 9.01869 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.013385 B = 0.003105 C = 0.002685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2091.449311 B = 9015.515039 C =10427.696448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.071 4.071 3 C -0.133 4.133 4 C -0.088 4.088 5 C -0.124 4.124 6 C 0.061 3.939 7 C -0.754 4.754 8 S 2.703 3.297 9 O -0.990 6.990 10 O -0.999 6.999 11 N -1.107 6.107 12 C 0.135 3.865 13 C 0.053 3.947 14 C -0.127 4.127 15 C -0.124 4.124 16 C -0.526 4.526 17 H 0.055 0.945 18 C 0.024 3.976 19 N -0.903 5.903 20 Si 0.945 3.055 21 H -0.277 1.277 22 H -0.289 1.289 23 H -0.273 1.273 24 C -0.100 4.100 25 C -0.139 4.139 26 H 0.083 0.917 27 H 0.074 0.926 28 H 0.081 0.919 29 H 0.153 0.847 30 H 0.151 0.849 31 H 0.155 0.845 32 H 0.168 0.832 33 H 0.420 0.580 34 H 0.066 0.934 35 H 0.059 0.941 36 H 0.031 0.969 37 H 0.059 0.941 38 H 0.018 0.982 39 H 0.027 0.973 40 H 0.058 0.942 41 H 0.034 0.966 42 H 0.258 0.742 43 H 0.128 0.872 44 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.386 13.080 -8.371 24.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.071 4.071 3 C -0.151 4.151 4 C -0.106 4.106 5 C -0.126 4.126 6 C 0.041 3.959 7 C -0.863 4.863 8 S 2.797 3.203 9 O -0.981 6.981 10 O -0.989 6.989 11 N -0.869 5.869 12 C 0.010 3.990 13 C 0.052 3.948 14 C -0.185 4.185 15 C -0.182 4.182 16 C -0.565 4.565 17 H 0.073 0.927 18 C -0.175 4.175 19 N -0.542 5.542 20 Si 0.772 3.228 21 H -0.203 1.203 22 H -0.215 1.215 23 H -0.198 1.198 24 C -0.118 4.118 25 C -0.157 4.157 26 H 0.102 0.898 27 H 0.093 0.907 28 H 0.100 0.900 29 H 0.171 0.829 30 H 0.169 0.831 31 H 0.173 0.827 32 H 0.185 0.815 33 H 0.257 0.743 34 H 0.084 0.916 35 H 0.078 0.922 36 H 0.050 0.950 37 H 0.078 0.922 38 H 0.037 0.963 39 H 0.047 0.953 40 H 0.077 0.923 41 H 0.053 0.947 42 H 0.067 0.933 43 H 0.146 0.854 44 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -17.797 13.212 -9.013 23.927 hybrid contribution -0.174 -1.332 0.922 1.629 sum -17.971 11.880 -8.091 23.012 Atomic orbital electron populations 1.20920 0.88951 1.04040 1.03468 1.20536 0.97908 0.92923 0.95707 1.21373 0.93797 0.98876 1.01063 1.21700 0.95043 0.97516 0.96304 1.19303 0.92332 0.94806 1.06135 1.22270 0.93523 0.98185 0.81959 1.33568 1.26438 1.06467 1.19797 1.01075 0.74840 0.71905 0.72480 1.93515 1.82778 1.34982 1.86832 1.93544 1.82152 1.66216 1.56975 1.55291 1.72341 1.20773 1.38456 1.21402 0.99524 0.78751 0.99371 1.18299 0.91804 0.94013 0.90716 1.21725 0.99571 0.97360 0.99821 1.21694 0.99346 0.96413 1.00742 1.21356 1.22841 0.96798 1.15529 0.92671 1.25516 0.94971 1.01013 0.96051 1.69939 1.26533 1.37159 1.20579 0.85817 0.78127 0.81477 0.77362 1.20268 1.21458 1.19801 1.21639 0.95154 0.97928 0.97106 1.21305 0.93611 0.99141 1.01639 0.89819 0.90727 0.90018 0.82945 0.83141 0.82710 0.81487 0.74282 0.91591 0.92231 0.94992 0.92207 0.96305 0.95345 0.92349 0.94678 0.93272 0.85378 0.84125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.02 10.01 71.24 0.71 -0.31 16 2 C -0.07 -1.03 5.89 -19.81 -0.12 -1.15 16 3 C -0.13 -1.86 9.68 22.23 0.22 -1.65 16 4 C -0.09 -1.45 9.79 22.52 0.22 -1.23 16 5 C -0.12 -2.63 5.87 -20.12 -0.12 -2.75 16 6 C 0.06 1.39 9.42 23.65 0.22 1.61 16 7 C -0.75 -19.46 9.71 66.67 0.65 -18.81 16 8 S 2.70 83.97 5.89 -56.49 -0.33 83.64 16 9 O -0.99 -32.63 16.89 -128.00 -2.16 -34.80 16 10 O -1.00 -38.28 17.50 -128.00 -2.24 -40.52 16 11 N -1.11 -36.40 5.33 -187.48 -1.00 -37.40 16 12 C 0.14 5.19 5.05 86.38 0.44 5.62 16 13 C 0.05 2.44 0.51 -52.93 -0.03 2.41 16 14 C -0.13 -5.92 8.08 71.98 0.58 -5.34 16 15 C -0.12 -5.45 8.08 71.98 0.58 -4.87 16 16 C -0.53 -27.01 8.01 25.60 0.21 -26.81 16 17 H 0.06 2.77 7.74 -2.91 -0.02 2.75 16 18 C 0.02 1.25 5.15 84.65 0.44 1.68 16 19 N -0.90 -48.73 9.35 21.45 0.20 -48.53 16 20 Si 0.95 42.04 29.54 68.60 2.03 44.06 16 21 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 22 H -0.29 -12.78 7.11 99.48 0.71 -12.08 16 23 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 24 C -0.10 -2.11 9.40 22.52 0.21 -1.89 16 25 C -0.14 -2.41 9.68 22.23 0.22 -2.20 16 26 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 27 H 0.07 0.59 8.08 -2.38 -0.02 0.57 16 28 H 0.08 0.52 8.08 -2.39 -0.02 0.50 16 29 H 0.15 1.27 8.06 -2.91 -0.02 1.24 16 30 H 0.15 1.75 8.06 -2.91 -0.02 1.73 16 31 H 0.16 3.07 7.21 -2.91 -0.02 3.05 16 32 H 0.17 4.04 6.04 -2.91 -0.02 4.02 16 33 H 0.42 13.10 6.47 -96.74 -0.63 12.48 16 34 H 0.07 2.31 8.14 -2.38 -0.02 2.29 16 35 H 0.06 2.38 7.76 -2.39 -0.02 2.36 16 36 H 0.03 1.30 7.20 -2.38 -0.02 1.28 16 37 H 0.06 3.08 6.07 -2.39 -0.01 3.07 16 38 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 39 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 40 H 0.06 2.90 6.07 -2.39 -0.01 2.89 16 41 H 0.03 1.31 6.60 -2.39 -0.02 1.30 16 42 H 0.26 13.50 8.31 -92.71 -0.77 12.73 16 43 H 0.13 2.63 6.17 -2.91 -0.02 2.61 16 44 H 0.14 1.92 8.06 -2.91 -0.02 1.89 16 Total: -1.00 -65.87 368.70 1.29 -64.58 By element: Atomic # 1 Polarization: 24.26 SS G_CDS: 0.38 Total: 24.63 kcal Atomic # 6 Polarization: -60.09 SS G_CDS: 4.42 Total: -55.66 kcal Atomic # 7 Polarization: -85.13 SS G_CDS: -0.80 Total: -85.93 kcal Atomic # 8 Polarization: -70.92 SS G_CDS: -4.40 Total: -75.32 kcal Atomic # 14 Polarization: 42.04 SS G_CDS: 2.03 Total: 44.06 kcal Atomic # 16 Polarization: 83.97 SS G_CDS: -0.33 Total: 83.64 kcal Total: -65.87 1.29 -64.58 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841542401.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.518 kcal (2) G-P(sol) polarization free energy of solvation -65.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.577 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds