Wall clock time and date at job start Tue Mar 31 2020 13:59:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38354 * 119.85748 * 2 1 4 4 C 1.37967 * 120.14233 * 179.97438 * 3 2 1 5 5 C 1.39537 * 119.85423 * 359.97438 * 4 3 2 6 6 C 1.47816 * 120.14050 * 179.97438 * 5 4 3 7 7 C 1.32569 * 119.99537 * 43.56054 * 6 5 4 8 8 S 1.76197 * 120.00307 * 17.17658 * 7 6 5 9 9 O 1.42102 * 106.40253 * 231.38995 * 8 7 6 10 10 O 1.42106 * 106.40313 * 4.30788 * 8 7 6 11 11 N 1.65598 * 107.22285 * 117.84774 * 8 7 6 12 12 C 1.46497 * 119.99773 * 64.99651 * 11 8 7 13 13 C 1.53007 * 109.47147 * 165.00373 * 12 11 8 14 14 C 1.53006 * 109.46803 * 300.00437 * 13 12 11 15 15 C 1.52999 * 109.46833 * 59.99940 * 13 12 11 16 16 C 1.50695 * 109.47391 * 180.02562 * 13 12 11 17 17 H 1.08000 * 119.99819 * 359.97438 * 16 13 12 18 18 C 1.37876 * 119.99902 * 180.02562 * 16 13 12 19 19 N 1.31505 * 120.00235 * 359.97438 * 18 16 13 20 20 Si 1.86805 * 119.99815 * 179.97438 * 18 16 13 21 21 H 1.48496 * 109.46989 * 0.02562 * 20 18 16 22 22 H 1.48505 * 109.46997 * 120.00146 * 20 18 16 23 23 H 1.48493 * 109.47177 * 240.00135 * 20 18 16 24 24 C 1.39532 * 119.72023 * 0.28384 * 5 4 3 25 25 C 1.37978 * 119.85463 * 359.41289 * 24 5 4 26 26 H 1.09002 * 109.46769 * 89.99763 * 1 2 3 27 27 H 1.08996 * 109.47166 * 210.00290 * 1 2 3 28 28 H 1.09003 * 109.46928 * 330.00392 * 1 2 3 29 29 H 1.08000 * 119.92590 * 359.97438 * 3 2 1 30 30 H 1.08004 * 120.07302 * 179.97438 * 4 3 2 31 31 H 1.07995 * 120.00355 * 223.55915 * 6 5 4 32 32 H 1.07998 * 120.00097 * 197.16819 * 7 6 5 33 33 H 0.96996 * 119.99902 * 245.00497 * 11 8 7 34 34 H 1.09001 * 109.47781 * 285.00094 * 12 11 8 35 35 H 1.09004 * 109.47322 * 45.00926 * 12 11 8 36 36 H 1.09001 * 109.47273 * 60.00025 * 14 13 12 37 37 H 1.08998 * 109.46815 * 179.97438 * 14 13 12 38 38 H 1.09000 * 109.46910 * 299.99552 * 14 13 12 39 39 H 1.08995 * 109.47372 * 60.00518 * 15 13 12 40 40 H 1.09005 * 109.46631 * 180.02562 * 15 13 12 41 41 H 1.08998 * 109.47467 * 299.99696 * 15 13 12 42 42 H 0.97005 * 120.00374 * 179.97438 * 19 18 16 43 43 H 1.08002 * 120.07182 * 179.72463 * 24 5 4 44 44 H 1.07993 * 119.92813 * 180.30392 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1958 1.1999 0.0000 4 6 3.5754 1.2068 0.0005 5 6 4.2761 0.0000 0.0016 6 6 5.7542 0.0000 0.0016 7 6 6.4170 0.8327 0.7921 8 16 5.5949 1.6044 2.1460 9 8 5.8555 2.9968 2.0328 10 8 4.2829 1.0598 2.1821 11 7 6.3494 1.0986 3.5306 12 6 7.7443 1.4692 3.7819 13 6 8.0833 1.2126 5.2517 14 6 7.1641 2.0523 6.1411 15 6 7.8845 -0.2708 5.5695 16 6 9.5179 1.5944 5.5104 17 1 10.1272 1.9810 4.7068 18 6 10.0530 1.4492 6.7728 19 7 9.3113 0.9781 7.7512 20 14 11.8317 1.9219 7.0933 21 1 12.4449 2.4224 5.8369 22 1 11.8822 2.9870 8.1269 23 1 12.5815 0.7325 7.5711 24 6 3.5754 -1.2066 -0.0039 25 6 2.1957 -1.1998 0.0020 26 1 -0.3633 0.0000 -1.0277 27 1 -0.3633 -0.8899 0.5139 28 1 -0.3633 0.8901 0.5138 29 1 1.6523 2.1332 -0.0004 30 1 4.1120 2.1441 0.0001 31 1 6.2942 -0.6783 -0.6422 32 1 7.4609 1.0379 0.6063 33 1 5.8678 0.5568 4.1751 34 1 8.3991 0.8709 3.1483 35 1 7.8859 2.5260 3.5556 36 1 6.1263 1.7765 5.9541 37 1 7.4053 1.8692 7.1882 38 1 7.3058 3.1091 5.9147 39 1 8.5392 -0.8690 4.9359 40 1 8.1256 -0.4534 6.6167 41 1 6.8467 -0.5465 5.3825 42 1 9.6879 0.8756 8.6393 43 1 4.1120 -2.1440 -0.0075 44 1 1.6523 -2.1330 0.0027 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000841542402.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:59:00 Heat of formation + Delta-G solvation = -27.596477 kcal Electronic energy + Delta-G solvation = -25443.534166 eV Core-core repulsion = 21874.570020 eV Total energy + Delta-G solvation = -3568.964147 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.57148 -37.02836 -36.68993 -35.60808 -34.85720 -33.21184 -31.47487 -30.98604 -30.50273 -26.80772 -25.68687 -25.53597 -24.51336 -23.11381 -22.42086 -20.71910 -19.03963 -18.63126 -17.75257 -16.80745 -15.86825 -15.76877 -15.49740 -15.34418 -14.95172 -14.56703 -14.45957 -13.94236 -13.82458 -13.53387 -13.39007 -13.06452 -12.95754 -12.51786 -12.37837 -12.23672 -11.73514 -11.63692 -11.48508 -11.43618 -11.34929 -11.21439 -11.09723 -10.94263 -10.72588 -10.62698 -10.39252 -10.17916 -10.15588 -9.64831 -9.33396 -8.83811 -8.81409 -8.75545 -8.37172 -8.30626 -6.01235 -4.12066 0.46841 0.92753 1.44676 1.80333 3.26742 3.35440 3.38279 3.45437 3.72203 4.04281 4.39038 4.41021 4.69980 4.77910 4.80515 4.85061 5.10566 5.25330 5.28568 5.35328 5.42413 5.55390 5.64309 5.73156 5.82212 5.93182 6.00644 6.04875 6.18761 6.34914 6.41762 6.46109 6.50645 6.53395 6.77238 6.92283 6.94249 7.01572 7.07703 7.35998 7.54987 7.60145 7.70853 8.04285 8.16038 8.40113 8.88512 9.53747 10.99962 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.028434 B = 0.002945 C = 0.002909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 984.496163 B = 9504.834622 C = 9623.041930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.069 4.069 3 C -0.118 4.118 4 C -0.049 4.049 5 C -0.102 4.102 6 C 0.055 3.945 7 C -0.748 4.748 8 S 2.670 3.330 9 O -0.969 6.969 10 O -0.957 6.957 11 N -1.104 6.104 12 C 0.125 3.875 13 C 0.063 3.937 14 C -0.132 4.132 15 C -0.132 4.132 16 C -0.508 4.508 17 H 0.058 0.942 18 C 0.066 3.934 19 N -0.884 5.884 20 Si 0.892 3.108 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.285 1.285 24 C -0.082 4.082 25 C -0.130 4.130 26 H 0.069 0.931 27 H 0.066 0.934 28 H 0.067 0.933 29 H 0.123 0.877 30 H 0.110 0.890 31 H 0.132 0.868 32 H 0.164 0.836 33 H 0.417 0.583 34 H 0.050 0.950 35 H 0.068 0.932 36 H 0.010 0.990 37 H 0.084 0.916 38 H 0.028 0.972 39 H 0.026 0.974 40 H 0.086 0.914 41 H 0.008 0.992 42 H 0.259 0.741 43 H 0.124 0.876 44 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.993 -4.592 -15.534 20.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.069 4.069 3 C -0.137 4.137 4 C -0.068 4.068 5 C -0.103 4.103 6 C 0.035 3.965 7 C -0.853 4.853 8 S 2.760 3.240 9 O -0.959 6.959 10 O -0.947 6.947 11 N -0.867 5.867 12 C 0.000 4.000 13 C 0.061 3.939 14 C -0.190 4.190 15 C -0.190 4.190 16 C -0.547 4.547 17 H 0.076 0.924 18 C -0.135 4.135 19 N -0.523 5.523 20 Si 0.721 3.279 21 H -0.198 1.198 22 H -0.210 1.210 23 H -0.211 1.211 24 C -0.100 4.100 25 C -0.148 4.148 26 H 0.088 0.912 27 H 0.085 0.915 28 H 0.086 0.914 29 H 0.141 0.859 30 H 0.128 0.872 31 H 0.150 0.850 32 H 0.181 0.819 33 H 0.254 0.746 34 H 0.068 0.932 35 H 0.086 0.914 36 H 0.029 0.971 37 H 0.103 0.897 38 H 0.047 0.953 39 H 0.045 0.955 40 H 0.104 0.896 41 H 0.027 0.973 42 H 0.070 0.930 43 H 0.142 0.858 44 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -13.535 -3.944 -15.535 20.979 hybrid contribution 1.689 -0.489 0.245 1.775 sum -11.846 -4.432 -15.290 19.844 Atomic orbital electron populations 1.20825 0.91307 1.02982 1.02126 1.19970 0.95937 0.93191 0.97780 1.20762 0.93533 0.97670 1.01691 1.21004 0.94953 0.95925 0.94895 1.19051 0.92103 0.94512 1.04619 1.21777 0.92127 0.90576 0.92015 1.33925 1.15584 1.16333 1.19497 1.02427 0.73511 0.74380 0.73655 1.93577 1.85589 1.30282 1.86454 1.93725 1.34782 1.79737 1.86500 1.55398 1.25055 1.70435 1.35853 1.21697 0.77644 0.99082 1.01601 1.18265 0.95367 0.93031 0.87193 1.21822 0.95060 0.98056 1.04068 1.21837 0.95669 0.97253 1.04221 1.21056 0.95307 1.42995 0.95348 0.92358 1.24890 0.97652 0.94882 0.96117 1.69819 1.35486 1.45550 1.01409 0.86531 0.85013 0.78110 0.78286 1.19791 1.21047 1.21122 1.21039 0.94255 0.96530 0.98154 1.20845 0.93901 0.97438 1.02605 0.91220 0.91481 0.91392 0.85864 0.87183 0.85043 0.81858 0.74625 0.93152 0.91413 0.97119 0.89724 0.95316 0.95452 0.89555 0.97279 0.93047 0.85832 0.86015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.92 10.01 36.01 0.36 -0.56 16 2 C -0.07 -0.76 5.89 -104.54 -0.62 -1.38 16 3 C -0.12 -1.45 9.68 -39.64 -0.38 -1.84 16 4 C -0.05 -0.67 6.34 -39.20 -0.25 -0.91 16 5 C -0.10 -1.32 4.05 -105.01 -0.42 -1.75 16 6 C 0.06 0.66 9.73 -37.57 -0.37 0.29 16 7 C -0.75 -10.15 10.07 28.83 0.29 -9.86 16 8 S 2.67 43.65 4.74 -107.50 -0.51 43.14 16 9 O -0.97 -18.92 17.49 -57.17 -1.00 -19.92 16 10 O -0.96 -16.13 12.91 -57.17 -0.74 -16.87 16 11 N -1.10 -19.25 5.33 -10.61 -0.06 -19.31 16 12 C 0.12 2.49 5.05 -4.04 -0.02 2.47 16 13 C 0.06 1.47 0.51 -155.66 -0.08 1.39 16 14 C -0.13 -3.10 8.08 37.16 0.30 -2.80 16 15 C -0.13 -2.95 8.08 37.16 0.30 -2.65 16 16 C -0.51 -13.10 8.01 -34.44 -0.28 -13.37 16 17 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 18 C 0.07 1.72 5.15 -17.82 -0.09 1.63 16 19 N -0.88 -23.60 9.35 55.43 0.52 -23.08 16 20 Si 0.89 20.49 29.54 -169.99 -5.02 15.47 16 21 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 22 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 23 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 24 C -0.08 -0.94 9.79 -39.19 -0.38 -1.32 16 25 C -0.13 -1.40 9.68 -39.64 -0.38 -1.78 16 26 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.07 0.47 8.08 -51.93 -0.42 0.05 16 28 H 0.07 0.51 8.08 -51.93 -0.42 0.09 16 29 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 30 H 0.11 1.46 7.19 -52.48 -0.38 1.08 16 31 H 0.13 1.16 8.06 -52.49 -0.42 0.73 16 32 H 0.16 2.01 8.06 -52.49 -0.42 1.58 16 33 H 0.42 7.00 6.47 -34.47 -0.22 6.78 16 34 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.07 1.39 7.75 -51.93 -0.40 0.99 16 36 H 0.01 0.21 7.20 -51.93 -0.37 -0.16 16 37 H 0.08 2.16 6.07 -51.93 -0.32 1.85 16 38 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.09 2.15 6.07 -51.93 -0.32 1.83 16 41 H 0.01 0.17 6.60 -51.93 -0.34 -0.18 16 42 H 0.26 6.67 8.31 -40.82 -0.34 6.33 16 43 H 0.12 1.11 8.06 -52.49 -0.42 0.68 16 44 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 LS Contribution 363.22 15.07 5.47 5.47 Total: -1.00 -30.67 363.22 -9.89 -40.57 By element: Atomic # 1 Polarization: 13.50 SS G_CDS: -6.54 Total: 6.97 kcal Atomic # 6 Polarization: -30.42 SS G_CDS: -2.02 Total: -32.44 kcal Atomic # 7 Polarization: -42.84 SS G_CDS: 0.46 Total: -42.38 kcal Atomic # 8 Polarization: -35.05 SS G_CDS: -1.74 Total: -36.79 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.47 kcal Atomic # 16 Polarization: 43.65 SS G_CDS: -0.51 Total: 43.14 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -30.67 -9.89 -40.57 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841542402.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.970 kcal (2) G-P(sol) polarization free energy of solvation -30.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.566 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds