Wall clock time and date at job start Tue Mar 31 2020 13:58:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38354 * 119.85748 * 2 1 4 4 C 1.37967 * 120.14233 * 179.97438 * 3 2 1 5 5 C 1.39537 * 119.85423 * 359.97438 * 4 3 2 6 6 C 1.47816 * 120.14050 * 179.97438 * 5 4 3 7 7 C 1.32569 * 119.99537 * 43.56054 * 6 5 4 8 8 S 1.76197 * 120.00307 * 17.17658 * 7 6 5 9 9 O 1.42102 * 106.40253 * 231.38995 * 8 7 6 10 10 O 1.42106 * 106.40313 * 4.30788 * 8 7 6 11 11 N 1.65598 * 107.22285 * 117.84774 * 8 7 6 12 12 C 1.46497 * 119.99773 * 64.99651 * 11 8 7 13 13 C 1.53007 * 109.47147 * 165.00373 * 12 11 8 14 14 C 1.53006 * 109.46803 * 300.00437 * 13 12 11 15 15 C 1.52999 * 109.46833 * 59.99940 * 13 12 11 16 16 C 1.50695 * 109.47391 * 180.02562 * 13 12 11 17 17 H 1.08000 * 119.99819 * 359.97438 * 16 13 12 18 18 C 1.37876 * 119.99902 * 180.02562 * 16 13 12 19 19 N 1.31505 * 120.00235 * 359.97438 * 18 16 13 20 20 Si 1.86805 * 119.99815 * 179.97438 * 18 16 13 21 21 H 1.48496 * 109.46989 * 0.02562 * 20 18 16 22 22 H 1.48505 * 109.46997 * 120.00146 * 20 18 16 23 23 H 1.48493 * 109.47177 * 240.00135 * 20 18 16 24 24 C 1.39532 * 119.72023 * 0.28384 * 5 4 3 25 25 C 1.37978 * 119.85463 * 359.41289 * 24 5 4 26 26 H 1.09002 * 109.46769 * 89.99763 * 1 2 3 27 27 H 1.08996 * 109.47166 * 210.00290 * 1 2 3 28 28 H 1.09003 * 109.46928 * 330.00392 * 1 2 3 29 29 H 1.08000 * 119.92590 * 359.97438 * 3 2 1 30 30 H 1.08004 * 120.07302 * 179.97438 * 4 3 2 31 31 H 1.07995 * 120.00355 * 223.55915 * 6 5 4 32 32 H 1.07998 * 120.00097 * 197.16819 * 7 6 5 33 33 H 0.96996 * 119.99902 * 245.00497 * 11 8 7 34 34 H 1.09001 * 109.47781 * 285.00094 * 12 11 8 35 35 H 1.09004 * 109.47322 * 45.00926 * 12 11 8 36 36 H 1.09001 * 109.47273 * 60.00025 * 14 13 12 37 37 H 1.08998 * 109.46815 * 179.97438 * 14 13 12 38 38 H 1.09000 * 109.46910 * 299.99552 * 14 13 12 39 39 H 1.08995 * 109.47372 * 60.00518 * 15 13 12 40 40 H 1.09005 * 109.46631 * 180.02562 * 15 13 12 41 41 H 1.08998 * 109.47467 * 299.99696 * 15 13 12 42 42 H 0.97005 * 120.00374 * 179.97438 * 19 18 16 43 43 H 1.08002 * 120.07182 * 179.72463 * 24 5 4 44 44 H 1.07993 * 119.92813 * 180.30392 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1958 1.1999 0.0000 4 6 3.5754 1.2068 0.0005 5 6 4.2761 0.0000 0.0016 6 6 5.7542 0.0000 0.0016 7 6 6.4170 0.8327 0.7921 8 16 5.5949 1.6044 2.1460 9 8 5.8555 2.9968 2.0328 10 8 4.2829 1.0598 2.1821 11 7 6.3494 1.0986 3.5306 12 6 7.7443 1.4692 3.7819 13 6 8.0833 1.2126 5.2517 14 6 7.1641 2.0523 6.1411 15 6 7.8845 -0.2708 5.5695 16 6 9.5179 1.5944 5.5104 17 1 10.1272 1.9810 4.7068 18 6 10.0530 1.4492 6.7728 19 7 9.3113 0.9781 7.7512 20 14 11.8317 1.9219 7.0933 21 1 12.4449 2.4224 5.8369 22 1 11.8822 2.9870 8.1269 23 1 12.5815 0.7325 7.5711 24 6 3.5754 -1.2066 -0.0039 25 6 2.1957 -1.1998 0.0020 26 1 -0.3633 0.0000 -1.0277 27 1 -0.3633 -0.8899 0.5139 28 1 -0.3633 0.8901 0.5138 29 1 1.6523 2.1332 -0.0004 30 1 4.1120 2.1441 0.0001 31 1 6.2942 -0.6783 -0.6422 32 1 7.4609 1.0379 0.6063 33 1 5.8678 0.5568 4.1751 34 1 8.3991 0.8709 3.1483 35 1 7.8859 2.5260 3.5556 36 1 6.1263 1.7765 5.9541 37 1 7.4053 1.8692 7.1882 38 1 7.3058 3.1091 5.9147 39 1 8.5392 -0.8690 4.9359 40 1 8.1256 -0.4534 6.6167 41 1 6.8467 -0.5465 5.3825 42 1 9.6879 0.8756 8.6393 43 1 4.1120 -2.1440 -0.0075 44 1 1.6523 -2.1330 0.0027 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000841542402.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:58:59 Heat of formation + Delta-G solvation = -45.588374 kcal Electronic energy + Delta-G solvation = -25444.314353 eV Core-core repulsion = 21874.570020 eV Total energy + Delta-G solvation = -3569.744334 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.44885 -38.64853 -38.07918 -36.91207 -35.82558 -34.93193 -32.38275 -32.27437 -31.80698 -27.61428 -27.52557 -27.39428 -26.25083 -24.03751 -23.30405 -21.67950 -20.75509 -19.98902 -18.98219 -18.05893 -17.60406 -17.10169 -16.63142 -16.38397 -16.34261 -15.82946 -15.49570 -15.29379 -15.00945 -14.80048 -14.55917 -14.35523 -14.05301 -13.83114 -13.53561 -13.32227 -13.25658 -13.07095 -13.00843 -12.90620 -12.74694 -12.52742 -12.39243 -12.31700 -12.25119 -12.08595 -12.05692 -11.72943 -11.46725 -11.14931 -11.09897 -10.66181 -10.40900 -10.21170 -9.72595 -9.20798 -7.98299 -6.14665 -0.63102 -0.17168 0.56153 0.88261 1.43855 1.48182 1.57011 2.15979 2.48896 2.75772 2.90199 3.25445 3.48171 3.56467 3.85310 4.00510 4.06708 4.23885 4.32016 4.48806 4.52217 4.55613 4.73592 4.75403 4.81217 4.83888 4.86819 4.95187 5.01808 5.09109 5.11252 5.18918 5.23541 5.26470 5.29037 5.47408 5.51660 5.51988 5.70187 5.70363 5.71439 6.10105 6.11365 6.18843 6.28404 6.47055 6.92315 7.53238 9.00865 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.028434 B = 0.002945 C = 0.002909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 984.496163 B = 9504.834622 C = 9623.041930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.074 4.074 3 C -0.139 4.139 4 C -0.075 4.075 5 C -0.128 4.128 6 C 0.079 3.921 7 C -0.763 4.763 8 S 2.679 3.321 9 O -1.010 7.010 10 O -0.965 6.965 11 N -1.106 6.106 12 C 0.133 3.867 13 C 0.053 3.947 14 C -0.127 4.127 15 C -0.124 4.124 16 C -0.525 4.525 17 H 0.055 0.945 18 C 0.023 3.977 19 N -0.903 5.903 20 Si 0.946 3.054 21 H -0.269 1.269 22 H -0.287 1.287 23 H -0.283 1.283 24 C -0.085 4.085 25 C -0.137 4.137 26 H 0.086 0.914 27 H 0.078 0.922 28 H 0.068 0.932 29 H 0.133 0.867 30 H 0.100 0.900 31 H 0.172 0.828 32 H 0.178 0.822 33 H 0.419 0.581 34 H 0.067 0.933 35 H 0.056 0.944 36 H 0.029 0.971 37 H 0.060 0.940 38 H 0.017 0.983 39 H 0.030 0.970 40 H 0.058 0.942 41 H 0.033 0.967 42 H 0.258 0.742 43 H 0.151 0.849 44 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.576 -6.384 -17.191 22.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.074 4.074 3 C -0.157 4.157 4 C -0.094 4.094 5 C -0.129 4.129 6 C 0.059 3.941 7 C -0.873 4.873 8 S 2.773 3.227 9 O -1.000 7.000 10 O -0.955 6.955 11 N -0.868 5.868 12 C 0.007 3.993 13 C 0.052 3.948 14 C -0.184 4.184 15 C -0.181 4.181 16 C -0.564 4.564 17 H 0.073 0.927 18 C -0.176 4.176 19 N -0.542 5.542 20 Si 0.773 3.227 21 H -0.194 1.194 22 H -0.213 1.213 23 H -0.209 1.209 24 C -0.103 4.103 25 C -0.155 4.155 26 H 0.105 0.895 27 H 0.097 0.903 28 H 0.087 0.913 29 H 0.151 0.849 30 H 0.118 0.882 31 H 0.189 0.811 32 H 0.195 0.805 33 H 0.256 0.744 34 H 0.086 0.914 35 H 0.074 0.926 36 H 0.048 0.952 37 H 0.079 0.921 38 H 0.036 0.964 39 H 0.049 0.951 40 H 0.077 0.923 41 H 0.051 0.949 42 H 0.068 0.932 43 H 0.168 0.832 44 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -14.138 -5.716 -17.159 22.956 hybrid contribution 1.723 0.023 0.668 1.848 sum -12.415 -5.692 -16.491 21.412 Atomic orbital electron populations 1.20887 0.89172 1.03670 1.03398 1.20395 0.97670 0.92891 0.96480 1.21049 0.93451 0.98962 1.02218 1.21166 0.95809 0.96140 0.96289 1.19301 0.92816 0.94903 1.05834 1.22195 0.91848 0.89291 0.90735 1.33450 1.16177 1.17998 1.19635 1.01872 0.73354 0.73540 0.73903 1.93522 1.86152 1.33299 1.87040 1.93719 1.35381 1.79614 1.86779 1.55288 1.23981 1.70457 1.37029 1.21424 0.79257 0.98830 0.99744 1.18305 0.94084 0.93327 0.89116 1.21727 0.96404 0.97564 1.02752 1.21688 0.97259 0.96767 1.02431 1.21398 0.96770 1.42832 0.95375 0.92669 1.25523 1.00782 0.95126 0.96163 1.69946 1.36600 1.46181 1.01496 0.85687 0.81362 0.77636 0.77983 1.19368 1.21319 1.20854 1.21432 0.94848 0.96988 0.97029 1.21271 0.94063 0.98469 1.01652 0.89547 0.90262 0.91258 0.84942 0.88159 0.81082 0.80474 0.74392 0.91430 0.92599 0.95232 0.92066 0.96391 0.95102 0.92265 0.94851 0.93236 0.83171 0.83280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.55 10.01 71.24 0.71 -0.83 16 2 C -0.07 -1.50 5.89 -19.81 -0.12 -1.62 16 3 C -0.14 -3.32 9.68 22.23 0.22 -3.11 16 4 C -0.07 -2.01 6.34 22.52 0.14 -1.87 16 5 C -0.13 -3.07 4.05 -20.12 -0.08 -3.15 16 6 C 0.08 1.68 9.73 23.65 0.23 1.91 16 7 C -0.76 -19.40 10.07 66.67 0.67 -18.73 16 8 S 2.68 86.70 4.74 -56.49 -0.27 86.44 16 9 O -1.01 -40.23 17.49 -128.00 -2.24 -42.47 16 10 O -0.96 -32.10 12.91 -128.00 -1.65 -33.75 16 11 N -1.11 -37.74 5.33 -187.48 -1.00 -38.74 16 12 C 0.13 5.24 5.05 86.38 0.44 5.68 16 13 C 0.05 2.47 0.51 -52.93 -0.03 2.44 16 14 C -0.13 -6.00 8.08 71.98 0.58 -5.42 16 15 C -0.12 -5.45 8.08 71.98 0.58 -4.87 16 16 C -0.52 -27.10 8.01 25.60 0.21 -26.89 16 17 H 0.06 2.81 7.74 -2.91 -0.02 2.79 16 18 C 0.02 1.23 5.15 84.66 0.44 1.66 16 19 N -0.90 -48.76 9.35 21.45 0.20 -48.56 16 20 Si 0.95 42.13 29.54 68.60 2.03 44.15 16 21 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 22 H -0.29 -12.80 7.11 99.48 0.71 -12.09 16 23 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 24 C -0.09 -1.71 9.79 22.52 0.22 -1.49 16 25 C -0.14 -2.57 9.68 22.23 0.22 -2.35 16 26 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 27 H 0.08 0.88 8.08 -2.39 -0.02 0.86 16 28 H 0.07 0.91 8.08 -2.39 -0.02 0.90 16 29 H 0.13 2.71 8.06 -2.91 -0.02 2.69 16 30 H 0.10 2.75 7.19 -2.91 -0.02 2.73 16 31 H 0.17 2.25 8.06 -2.91 -0.02 2.23 16 32 H 0.18 3.99 8.06 -2.91 -0.02 3.97 16 33 H 0.42 13.65 6.47 -96.75 -0.63 13.03 16 34 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 35 H 0.06 2.31 7.75 -2.39 -0.02 2.29 16 36 H 0.03 1.23 7.20 -2.39 -0.02 1.21 16 37 H 0.06 3.18 6.07 -2.39 -0.01 3.17 16 38 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 39 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 40 H 0.06 2.95 6.07 -2.38 -0.01 2.94 16 41 H 0.03 1.26 6.60 -2.39 -0.02 1.25 16 42 H 0.26 13.43 8.31 -92.70 -0.77 12.66 16 43 H 0.15 2.09 8.06 -2.91 -0.02 2.07 16 44 H 0.15 1.89 8.06 -2.91 -0.02 1.87 16 Total: -1.00 -66.24 363.22 1.86 -64.38 By element: Atomic # 1 Polarization: 26.84 SS G_CDS: 0.37 Total: 27.20 kcal Atomic # 6 Polarization: -63.07 SS G_CDS: 4.42 Total: -58.64 kcal Atomic # 7 Polarization: -86.51 SS G_CDS: -0.80 Total: -87.30 kcal Atomic # 8 Polarization: -72.33 SS G_CDS: -3.89 Total: -76.22 kcal Atomic # 14 Polarization: 42.13 SS G_CDS: 2.03 Total: 44.15 kcal Atomic # 16 Polarization: 86.70 SS G_CDS: -0.27 Total: 86.44 kcal Total: -66.24 1.86 -64.38 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841542402.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.788 kcal (2) G-P(sol) polarization free energy of solvation -66.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.377 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds