Wall clock time and date at job start Tue Mar 31 2020 14:19:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38092 * 120.02622 * 2 1 4 4 C 1.38492 * 120.05148 * 180.02562 * 3 2 1 5 5 F 1.35103 * 119.94722 * 179.97438 * 4 3 2 6 6 C 1.38539 * 120.10689 * 359.97438 * 4 3 2 7 7 C 1.38044 * 120.04927 * 359.72623 * 6 4 3 8 8 C 1.38929 * 120.02850 * 179.97438 * 2 1 3 9 9 N 1.39841 * 120.05013 * 0.02562 * 8 2 1 10 10 C 1.37132 * 119.99775 * 90.00487 * 9 8 2 11 11 H 1.07994 * 119.99938 * 185.65591 * 10 9 8 12 12 C 1.38881 * 120.00058 * 5.65158 * 10 9 8 13 13 N 1.31428 * 119.99816 * 353.94479 * 12 10 9 14 14 Si 1.86798 * 120.00202 * 173.94456 * 12 10 9 15 15 H 1.48505 * 109.46670 * 90.00234 * 14 12 10 16 16 H 1.48495 * 109.47140 * 209.99995 * 14 12 10 17 17 H 1.48492 * 109.46932 * 330.00439 * 14 12 10 18 18 C 1.34774 * 120.00490 * 270.00194 * 9 8 2 19 19 O 1.21279 * 119.99788 * 5.40259 * 18 9 8 20 20 C 1.50696 * 120.00168 * 185.12953 * 18 9 8 21 21 C 1.53001 * 109.47105 * 174.83414 * 20 18 9 22 22 O 1.42967 * 109.47126 * 294.99541 * 21 20 18 23 23 C 1.43097 * 113.76764 * 181.20414 * 22 21 20 24 24 C 1.53253 * 108.94077 * 57.97498 * 23 22 21 25 25 C 1.53261 * 108.84639 * 305.47343 * 24 23 22 26 26 O 1.42968 * 109.47011 * 174.99699 * 21 20 18 27 27 H 1.09000 * 109.46824 * 270.02196 * 1 2 3 28 28 H 1.08995 * 109.47036 * 30.02367 * 1 2 3 29 29 H 1.09000 * 109.46991 * 150.02347 * 1 2 3 30 30 H 1.07997 * 119.96962 * 359.97438 * 3 2 1 31 31 H 1.08001 * 119.97926 * 180.02562 * 6 4 3 32 32 H 1.08003 * 120.02292 * 180.29538 * 7 6 4 33 33 H 0.97001 * 119.99937 * 185.00111 * 13 12 10 34 34 H 1.08996 * 109.47175 * 294.83368 * 20 18 9 35 35 H 1.09003 * 109.47472 * 54.83326 * 20 18 9 36 36 H 1.08996 * 109.46936 * 54.99859 * 21 20 18 37 37 H 1.09000 * 109.55685 * 298.13547 * 23 22 21 38 38 H 1.09003 * 109.55456 * 177.81307 * 23 22 21 39 39 H 1.09008 * 109.57414 * 185.66645 * 24 23 22 40 40 H 1.09000 * 109.68526 * 65.34909 * 24 23 22 41 41 H 1.09006 * 109.55827 * 294.68571 * 25 24 23 42 42 H 1.08999 * 109.64973 * 174.42006 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1980 1.1956 0.0000 4 6 3.5830 1.1962 -0.0005 5 9 4.2569 2.3671 -0.0011 6 6 4.2784 -0.0020 -0.0005 7 6 3.5920 -1.1996 0.0057 8 6 2.2023 -1.2028 0.0005 9 7 1.5047 -2.4148 0.0005 10 6 1.1633 -3.0094 -1.1871 11 1 0.5467 -3.8960 -1.1894 12 6 1.6104 -2.4713 -2.3868 13 7 2.2593 -1.3284 -2.3931 14 14 1.2895 -3.3719 -3.9916 15 1 -0.0071 -2.9234 -4.5601 16 1 2.3811 -3.0741 -4.9532 17 1 1.2391 -4.8340 -3.7371 18 6 1.1681 -2.9987 1.1677 19 8 1.3824 -2.4271 2.2156 20 6 0.5198 -4.3591 1.1702 21 6 0.3599 -4.8451 2.6122 22 8 1.6507 -5.0403 3.1951 23 6 1.6084 -5.5230 4.5415 24 6 0.8377 -6.8473 4.5712 25 6 -0.5375 -6.6343 3.9290 26 8 -0.3590 -6.0809 2.6216 27 1 -0.3633 0.0004 1.0277 28 1 -0.3633 0.8897 -0.5142 29 1 -0.3633 -0.8902 -0.5135 30 1 1.6580 2.1308 -0.0004 31 1 5.3584 0.0009 -0.0005 32 1 4.1346 -2.1335 0.0105 33 1 2.5079 -0.9164 -3.2353 34 1 -0.4603 -4.2954 0.6976 35 1 1.1448 -5.0605 0.6175 36 1 -0.1899 -4.1005 3.1877 37 1 1.1045 -4.7932 5.1752 38 1 2.6239 -5.6836 4.9036 39 1 0.7120 -7.1737 5.6036 40 1 1.3879 -7.6049 4.0131 41 1 -1.1228 -5.9466 4.5396 42 1 -1.0585 -7.5887 3.8533 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000875982938.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:19:38 Heat of formation + Delta-G solvation = -136.163079 kcal Electronic energy + Delta-G solvation = -28435.072086 eV Core-core repulsion = 24295.186962 eV Total energy + Delta-G solvation = -4139.885124 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -48.02075 -39.93569 -39.31387 -37.24481 -35.41359 -34.72943 -32.92132 -31.81738 -31.57534 -30.05071 -28.35693 -26.20155 -25.85792 -24.92532 -23.53667 -21.66289 -21.03842 -20.63641 -19.26230 -17.83020 -17.28354 -16.39589 -16.27301 -16.06626 -15.69685 -15.44095 -14.88895 -14.79261 -14.70619 -14.60071 -14.22054 -13.81199 -13.37860 -13.13908 -12.86070 -12.72659 -12.55799 -12.49325 -12.34785 -11.97236 -11.52090 -11.49777 -11.34304 -11.20620 -11.10674 -10.96239 -10.80800 -10.70971 -10.48286 -10.41155 -10.23416 -9.85479 -9.49469 -9.39674 -8.67791 -8.14148 -7.81291 -7.58366 -6.12768 -4.07124 2.30250 2.34971 3.05878 3.16712 3.18811 3.59545 3.69228 3.96252 4.01332 4.66425 4.69739 4.74058 4.74605 5.01607 5.11879 5.16721 5.21633 5.39845 5.45180 5.48160 5.67797 5.69626 5.73018 5.79780 5.98972 6.02529 6.07294 6.19444 6.28975 6.30939 6.45299 6.46064 6.66932 6.81400 7.05320 7.06553 7.12836 7.23298 7.31422 7.45827 7.52772 7.69421 7.90837 8.35327 8.93514 9.28217 9.70561 10.56683 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.012302 B = 0.004717 C = 0.003791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2275.595945 B = 5935.173352 C = 7383.474154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.045 4.045 3 C -0.149 4.149 4 C 0.063 3.937 5 F -0.160 7.160 6 C -0.151 4.151 7 C -0.068 4.068 8 C 0.259 3.741 9 N -0.417 5.417 10 C -0.345 4.345 11 H 0.107 0.893 12 C 0.039 3.961 13 N -0.853 5.853 14 Si 0.925 3.075 15 H -0.277 1.277 16 H -0.282 1.282 17 H -0.269 1.269 18 C 0.476 3.524 19 O -0.585 6.585 20 C -0.106 4.106 21 C 0.266 3.734 22 O -0.373 6.373 23 C 0.058 3.942 24 C -0.193 4.193 25 C 0.059 3.941 26 O -0.397 6.397 27 H 0.056 0.944 28 H 0.051 0.949 29 H 0.077 0.923 30 H 0.116 0.884 31 H 0.116 0.884 32 H 0.112 0.888 33 H 0.273 0.727 34 H 0.105 0.895 35 H 0.101 0.899 36 H 0.062 0.938 37 H 0.051 0.949 38 H 0.094 0.906 39 H 0.080 0.920 40 H 0.080 0.920 41 H 0.051 0.949 42 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.467 -5.505 7.102 9.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.047 4.047 3 C -0.169 4.169 4 C 0.044 3.956 5 F -0.139 7.139 6 C -0.170 4.170 7 C -0.088 4.088 8 C 0.168 3.832 9 N -0.135 5.135 10 C -0.471 4.471 11 H 0.125 0.875 12 C -0.167 4.167 13 N -0.490 5.490 14 Si 0.751 3.249 15 H -0.203 1.203 16 H -0.208 1.208 17 H -0.193 1.193 18 C 0.265 3.735 19 O -0.469 6.469 20 C -0.146 4.146 21 C 0.171 3.829 22 O -0.293 6.293 23 C -0.019 4.019 24 C -0.231 4.231 25 C -0.018 4.018 26 O -0.318 6.318 27 H 0.075 0.925 28 H 0.070 0.930 29 H 0.096 0.904 30 H 0.134 0.866 31 H 0.134 0.866 32 H 0.131 0.869 33 H 0.085 0.915 34 H 0.123 0.877 35 H 0.120 0.880 36 H 0.080 0.920 37 H 0.070 0.930 38 H 0.112 0.888 39 H 0.098 0.902 40 H 0.098 0.902 41 H 0.069 0.931 42 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -3.090 -5.130 7.156 9.331 hybrid contribution -0.059 -0.201 -0.821 0.847 sum -3.148 -5.331 6.335 8.858 Atomic orbital electron populations 1.20594 0.91837 1.02601 1.00811 1.19459 0.95544 0.91510 0.98207 1.20467 0.91896 0.97940 1.06548 1.17399 0.90023 0.80458 1.07764 1.91372 1.80787 1.46977 1.94798 1.20543 0.99041 0.91246 1.06195 1.20660 0.93506 0.96472 0.98117 1.16748 0.89662 0.84785 0.92034 1.41283 1.49089 1.17515 1.05595 1.19757 1.32903 1.12378 0.82020 0.87494 1.25266 0.95566 0.96192 0.99692 1.69839 1.36513 1.15361 1.27269 0.85938 0.78057 0.79697 0.81191 1.20320 1.20751 1.19335 1.19601 0.83383 0.87309 0.83196 1.90599 1.59325 1.65799 1.31182 1.21216 1.03555 0.96497 0.93347 1.23056 0.80466 0.84201 0.95213 1.88230 1.29116 1.85186 1.26762 1.22559 1.01368 0.93349 0.84667 1.22806 0.98237 0.99867 1.02161 1.22573 0.95700 0.99096 0.84394 1.88075 1.75002 1.40430 1.28287 0.92544 0.92954 0.90374 0.86625 0.86621 0.86943 0.91461 0.87670 0.88039 0.92017 0.93047 0.88757 0.90179 0.90162 0.93081 0.88687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.06 9.77 36.01 0.35 -1.71 16 2 C -0.05 -1.03 5.20 -104.42 -0.54 -1.57 16 3 C -0.15 -3.17 9.67 -39.54 -0.38 -3.55 16 4 C 0.06 1.34 7.30 -39.38 -0.29 1.05 16 5 F -0.16 -3.24 17.27 2.25 0.04 -3.20 16 6 C -0.15 -3.21 10.02 -39.54 -0.40 -3.61 16 7 C -0.07 -1.58 8.90 -39.38 -0.35 -1.93 16 8 C 0.26 6.21 2.20 -83.68 -0.18 6.03 16 9 N -0.42 -9.87 1.78 -58.98 -0.11 -9.97 16 10 C -0.34 -8.03 8.69 -14.94 -0.13 -8.16 16 11 H 0.11 2.31 6.38 -52.49 -0.34 1.98 16 12 C 0.04 0.92 5.44 -17.49 -0.10 0.82 16 13 N -0.85 -20.98 9.38 55.49 0.52 -20.46 16 14 Si 0.92 18.65 29.56 -169.99 -5.02 13.63 16 15 H -0.28 -5.59 7.11 56.52 0.40 -5.19 16 16 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 17 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 18 C 0.48 10.85 7.43 -10.99 -0.08 10.76 16 19 O -0.58 -14.68 15.49 -5.76 -0.09 -14.77 16 20 C -0.11 -2.02 4.18 -27.88 -0.12 -2.14 16 21 C 0.27 4.71 2.80 37.16 0.10 4.82 16 22 O -0.37 -6.91 9.90 -63.98 -0.63 -7.54 16 23 C 0.06 0.78 6.96 37.29 0.26 1.04 16 24 C -0.19 -2.10 6.35 -26.47 -0.17 -2.27 16 25 C 0.06 0.69 6.96 37.29 0.26 0.95 16 26 O -0.40 -6.29 10.54 -59.03 -0.62 -6.91 16 27 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 28 H 0.05 0.94 8.09 -51.93 -0.42 0.52 16 29 H 0.08 1.69 6.92 -51.93 -0.36 1.33 16 30 H 0.12 2.16 8.06 -52.49 -0.42 1.74 16 31 H 0.12 2.16 8.06 -52.49 -0.42 1.74 16 32 H 0.11 2.58 8.06 -52.48 -0.42 2.16 16 33 H 0.27 6.59 8.32 -40.82 -0.34 6.26 16 34 H 0.11 1.82 7.88 -51.93 -0.41 1.41 16 35 H 0.10 1.94 7.93 -51.93 -0.41 1.52 16 36 H 0.06 1.12 7.87 -51.93 -0.41 0.71 16 37 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 38 H 0.09 1.13 8.14 -51.93 -0.42 0.70 16 39 H 0.08 0.64 8.14 -51.92 -0.42 0.22 16 40 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 41 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 351.66 15.07 5.30 5.30 Total: -1.00 -28.59 351.66 -8.08 -36.68 By element: Atomic # 1 Polarization: 12.43 SS G_CDS: -5.71 Total: 6.72 kcal Atomic # 6 Polarization: 2.29 SS G_CDS: -1.76 Total: 0.53 kcal Atomic # 7 Polarization: -30.85 SS G_CDS: 0.42 Total: -30.43 kcal Atomic # 8 Polarization: -27.88 SS G_CDS: -1.35 Total: -29.23 kcal Atomic # 9 Polarization: -3.24 SS G_CDS: 0.04 Total: -3.20 kcal Atomic # 14 Polarization: 18.65 SS G_CDS: -5.02 Total: 13.63 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -28.59 -8.08 -36.68 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000875982938.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.485 kcal (2) G-P(sol) polarization free energy of solvation -28.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.678 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds