Wall clock time and date at job start Tue Mar 31 2020 14:19:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38092 * 120.02622 * 2 1 4 4 C 1.38492 * 120.05148 * 180.02562 * 3 2 1 5 5 F 1.35103 * 119.94722 * 179.97438 * 4 3 2 6 6 C 1.38539 * 120.10689 * 359.97438 * 4 3 2 7 7 C 1.38044 * 120.04927 * 359.72623 * 6 4 3 8 8 C 1.38929 * 120.02850 * 179.97438 * 2 1 3 9 9 N 1.39841 * 120.05013 * 0.02562 * 8 2 1 10 10 C 1.37132 * 119.99775 * 90.00487 * 9 8 2 11 11 H 1.07994 * 119.99938 * 185.65591 * 10 9 8 12 12 C 1.38881 * 120.00058 * 5.65158 * 10 9 8 13 13 N 1.31428 * 119.99816 * 353.94479 * 12 10 9 14 14 Si 1.86798 * 120.00202 * 173.94456 * 12 10 9 15 15 H 1.48505 * 109.46670 * 90.00234 * 14 12 10 16 16 H 1.48495 * 109.47140 * 209.99995 * 14 12 10 17 17 H 1.48492 * 109.46932 * 330.00439 * 14 12 10 18 18 C 1.34774 * 120.00490 * 270.00194 * 9 8 2 19 19 O 1.21279 * 119.99788 * 5.40259 * 18 9 8 20 20 C 1.50696 * 120.00168 * 185.12953 * 18 9 8 21 21 C 1.53001 * 109.47105 * 174.83414 * 20 18 9 22 22 O 1.42967 * 109.47126 * 294.99541 * 21 20 18 23 23 C 1.43097 * 113.76764 * 181.20414 * 22 21 20 24 24 C 1.53253 * 108.94077 * 57.97498 * 23 22 21 25 25 C 1.53261 * 108.84639 * 305.47343 * 24 23 22 26 26 O 1.42968 * 109.47011 * 174.99699 * 21 20 18 27 27 H 1.09000 * 109.46824 * 270.02196 * 1 2 3 28 28 H 1.08995 * 109.47036 * 30.02367 * 1 2 3 29 29 H 1.09000 * 109.46991 * 150.02347 * 1 2 3 30 30 H 1.07997 * 119.96962 * 359.97438 * 3 2 1 31 31 H 1.08001 * 119.97926 * 180.02562 * 6 4 3 32 32 H 1.08003 * 120.02292 * 180.29538 * 7 6 4 33 33 H 0.97001 * 119.99937 * 185.00111 * 13 12 10 34 34 H 1.08996 * 109.47175 * 294.83368 * 20 18 9 35 35 H 1.09003 * 109.47472 * 54.83326 * 20 18 9 36 36 H 1.08996 * 109.46936 * 54.99859 * 21 20 18 37 37 H 1.09000 * 109.55685 * 298.13547 * 23 22 21 38 38 H 1.09003 * 109.55456 * 177.81307 * 23 22 21 39 39 H 1.09008 * 109.57414 * 185.66645 * 24 23 22 40 40 H 1.09000 * 109.68526 * 65.34909 * 24 23 22 41 41 H 1.09006 * 109.55827 * 294.68571 * 25 24 23 42 42 H 1.08999 * 109.64973 * 174.42006 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1980 1.1956 0.0000 4 6 3.5830 1.1962 -0.0005 5 9 4.2569 2.3671 -0.0011 6 6 4.2784 -0.0020 -0.0005 7 6 3.5920 -1.1996 0.0057 8 6 2.2023 -1.2028 0.0005 9 7 1.5047 -2.4148 0.0005 10 6 1.1633 -3.0094 -1.1871 11 1 0.5467 -3.8960 -1.1894 12 6 1.6104 -2.4713 -2.3868 13 7 2.2593 -1.3284 -2.3931 14 14 1.2895 -3.3719 -3.9916 15 1 -0.0071 -2.9234 -4.5601 16 1 2.3811 -3.0741 -4.9532 17 1 1.2391 -4.8340 -3.7371 18 6 1.1681 -2.9987 1.1677 19 8 1.3824 -2.4271 2.2156 20 6 0.5198 -4.3591 1.1702 21 6 0.3599 -4.8451 2.6122 22 8 1.6507 -5.0403 3.1951 23 6 1.6084 -5.5230 4.5415 24 6 0.8377 -6.8473 4.5712 25 6 -0.5375 -6.6343 3.9290 26 8 -0.3590 -6.0809 2.6216 27 1 -0.3633 0.0004 1.0277 28 1 -0.3633 0.8897 -0.5142 29 1 -0.3633 -0.8902 -0.5135 30 1 1.6580 2.1308 -0.0004 31 1 5.3584 0.0009 -0.0005 32 1 4.1346 -2.1335 0.0105 33 1 2.5079 -0.9164 -3.2353 34 1 -0.4603 -4.2954 0.6976 35 1 1.1448 -5.0605 0.6175 36 1 -0.1899 -4.1005 3.1877 37 1 1.1045 -4.7932 5.1752 38 1 2.6239 -5.6836 4.9036 39 1 0.7120 -7.1737 5.6036 40 1 1.3879 -7.6049 4.0131 41 1 -1.1228 -5.9466 4.5396 42 1 -1.0585 -7.5887 3.8533 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000875982938.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:19:37 Heat of formation + Delta-G solvation = -150.136928 kcal Electronic energy + Delta-G solvation = -28435.678038 eV Core-core repulsion = 24295.186962 eV Total energy + Delta-G solvation = -4140.491075 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -49.67061 -41.47124 -40.72235 -38.94942 -36.66393 -36.47351 -34.08631 -33.56521 -33.31215 -31.50290 -29.97525 -27.87301 -26.88105 -26.69743 -24.98935 -23.28267 -22.39427 -22.02827 -21.01818 -19.50219 -18.65399 -17.93950 -17.85300 -17.38568 -17.22772 -16.87335 -16.66906 -16.35834 -15.89543 -15.83794 -15.67147 -15.47027 -15.02944 -14.49722 -14.34652 -14.24020 -14.16047 -14.08253 -13.82418 -13.56641 -13.21028 -12.95647 -12.82777 -12.74649 -12.43373 -12.37060 -12.26804 -12.10661 -12.02413 -11.95247 -11.90463 -11.22179 -10.94920 -10.63269 -10.46879 -9.94499 -9.53834 -9.30923 -7.90378 -5.89907 0.58254 0.62501 1.44431 1.52064 1.60993 1.94789 2.21006 2.44604 2.75111 2.95663 3.11840 3.23391 3.52244 3.82568 3.82716 3.89493 4.00475 4.02795 4.09900 4.24447 4.37556 4.45023 4.47957 4.49858 4.62172 4.67315 4.78556 4.81337 4.84173 4.85542 4.90227 4.97972 5.09899 5.14347 5.35489 5.43344 5.45791 5.56636 5.76751 5.92119 5.96145 6.18653 6.25355 6.56852 7.13120 7.51053 7.92855 8.77110 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.012302 B = 0.004717 C = 0.003791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2275.595945 B = 5935.173352 C = 7383.474154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C -0.065 4.065 3 C -0.149 4.149 4 C 0.058 3.942 5 F -0.152 7.152 6 C -0.150 4.150 7 C -0.090 4.090 8 C 0.239 3.761 9 N -0.423 5.423 10 C -0.356 4.356 11 H 0.120 0.880 12 C 0.002 3.998 13 N -0.873 5.873 14 Si 0.986 3.014 15 H -0.274 1.274 16 H -0.291 1.291 17 H -0.261 1.261 18 C 0.468 3.532 19 O -0.615 6.615 20 C -0.100 4.100 21 C 0.275 3.725 22 O -0.408 6.408 23 C 0.044 3.956 24 C -0.183 4.183 25 C 0.046 3.954 26 O -0.409 6.409 27 H 0.061 0.939 28 H 0.074 0.926 29 H 0.059 0.941 30 H 0.142 0.858 31 H 0.139 0.861 32 H 0.103 0.897 33 H 0.268 0.732 34 H 0.121 0.879 35 H 0.099 0.901 36 H 0.053 0.947 37 H 0.054 0.946 38 H 0.106 0.894 39 H 0.115 0.885 40 H 0.076 0.924 41 H 0.062 0.938 42 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.305 -6.304 7.340 10.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.066 4.066 3 C -0.168 4.168 4 C 0.039 3.961 5 F -0.131 7.131 6 C -0.169 4.169 7 C -0.109 4.109 8 C 0.147 3.853 9 N -0.140 5.140 10 C -0.481 4.481 11 H 0.138 0.862 12 C -0.202 4.202 13 N -0.510 5.510 14 Si 0.811 3.189 15 H -0.200 1.200 16 H -0.217 1.217 17 H -0.185 1.185 18 C 0.259 3.741 19 O -0.501 6.501 20 C -0.140 4.140 21 C 0.179 3.821 22 O -0.329 6.329 23 C -0.032 4.032 24 C -0.220 4.220 25 C -0.029 4.029 26 O -0.330 6.330 27 H 0.079 0.921 28 H 0.093 0.907 29 H 0.078 0.922 30 H 0.159 0.841 31 H 0.157 0.843 32 H 0.121 0.879 33 H 0.079 0.921 34 H 0.139 0.861 35 H 0.117 0.883 36 H 0.071 0.929 37 H 0.072 0.928 38 H 0.124 0.876 39 H 0.134 0.866 40 H 0.094 0.906 41 H 0.081 0.919 42 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -3.938 -5.946 7.407 10.283 hybrid contribution 0.235 0.055 -0.809 0.844 sum -3.702 -5.891 6.599 9.589 Atomic orbital electron populations 1.20530 0.90566 1.02786 1.01129 1.19765 0.96739 0.91596 0.98531 1.20761 0.92111 0.98591 1.05379 1.17468 0.90285 0.80698 1.07688 1.91388 1.80625 1.46400 1.94732 1.20762 1.00284 0.90722 1.05135 1.20726 0.93687 0.96872 0.99651 1.17067 0.90139 0.85521 0.92556 1.41476 1.48905 1.17654 1.05979 1.20119 1.33090 1.12799 0.82113 0.86241 1.25973 0.95377 0.96689 1.02170 1.69993 1.37283 1.16403 1.27322 0.84998 0.77444 0.78991 0.77477 1.19966 1.21705 1.18485 1.20204 0.83029 0.88326 0.82569 1.90559 1.60581 1.66873 1.32085 1.21158 1.03761 0.94138 0.94914 1.22717 0.80520 0.84928 0.93916 1.88175 1.29665 1.85861 1.29190 1.22884 1.02840 0.94876 0.82614 1.22751 0.97113 0.97965 1.04194 1.22969 0.96658 1.00399 0.82906 1.88037 1.74613 1.39480 1.30906 0.92081 0.90687 0.92155 0.84062 0.84327 0.87889 0.92075 0.86143 0.88301 0.92939 0.92774 0.87588 0.86647 0.90552 0.91946 0.85915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.76 9.77 71.24 0.70 -3.06 16 2 C -0.06 -2.92 5.20 -19.73 -0.10 -3.02 16 3 C -0.15 -6.20 9.67 22.30 0.22 -5.98 16 4 C 0.06 2.42 7.30 22.40 0.16 2.58 16 5 F -0.15 -5.93 17.27 44.97 0.78 -5.15 16 6 C -0.15 -6.36 10.02 22.30 0.22 -6.14 16 7 C -0.09 -4.25 8.90 22.40 0.20 -4.05 16 8 C 0.24 11.60 2.20 38.21 0.08 11.69 16 9 N -0.42 -20.35 1.78 -458.89 -0.82 -21.16 16 10 C -0.36 -16.63 8.69 84.02 0.73 -15.90 16 11 H 0.12 5.12 6.38 -2.91 -0.02 5.10 16 12 C 0.00 0.07 5.44 84.91 0.46 0.53 16 13 N -0.87 -43.15 9.38 21.65 0.20 -42.94 16 14 Si 0.99 37.97 29.56 68.60 2.03 39.99 16 15 H -0.27 -10.35 7.11 99.48 0.71 -9.64 16 16 H -0.29 -11.55 7.11 99.48 0.71 -10.85 16 17 H -0.26 -9.62 7.11 99.48 0.71 -8.91 16 18 C 0.47 21.77 7.43 87.66 0.65 22.42 16 19 O -0.61 -31.68 15.49 7.80 0.12 -31.56 16 20 C -0.10 -3.84 4.18 29.85 0.12 -3.71 16 21 C 0.27 9.73 2.80 71.98 0.20 9.93 16 22 O -0.41 -15.20 9.90 -121.49 -1.20 -16.40 16 23 C 0.04 1.15 6.96 72.07 0.50 1.65 16 24 C -0.18 -3.55 6.35 30.77 0.20 -3.36 16 25 C 0.05 0.98 6.96 72.07 0.50 1.48 16 26 O -0.41 -12.47 10.54 -126.22 -1.33 -13.80 16 27 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 28 H 0.07 2.60 8.09 -2.39 -0.02 2.58 16 29 H 0.06 2.62 6.92 -2.39 -0.02 2.60 16 30 H 0.14 5.01 8.06 -2.91 -0.02 4.98 16 31 H 0.14 5.08 8.06 -2.91 -0.02 5.05 16 32 H 0.10 4.92 8.06 -2.91 -0.02 4.89 16 33 H 0.27 13.01 8.32 -92.71 -0.77 12.24 16 34 H 0.12 4.14 7.88 -2.39 -0.02 4.12 16 35 H 0.10 3.81 7.93 -2.39 -0.02 3.79 16 36 H 0.05 1.93 7.87 -2.39 -0.02 1.91 16 37 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 38 H 0.11 2.44 8.14 -2.39 -0.02 2.43 16 39 H 0.12 1.44 8.14 -2.38 -0.02 1.42 16 40 H 0.08 1.56 8.14 -2.39 -0.02 1.55 16 41 H 0.06 1.18 8.14 -2.38 -0.02 1.16 16 42 H 0.12 1.91 8.14 -2.39 -0.02 1.89 16 Total: -1.00 -61.62 351.66 5.66 -55.96 By element: Atomic # 1 Polarization: 28.95 SS G_CDS: 1.03 Total: 29.99 kcal Atomic # 6 Polarization: 0.23 SS G_CDS: 4.85 Total: 5.07 kcal Atomic # 7 Polarization: -63.49 SS G_CDS: -0.61 Total: -64.11 kcal Atomic # 8 Polarization: -59.35 SS G_CDS: -2.41 Total: -61.76 kcal Atomic # 9 Polarization: -5.93 SS G_CDS: 0.78 Total: -5.15 kcal Atomic # 14 Polarization: 37.97 SS G_CDS: 2.03 Total: 39.99 kcal Total: -61.62 5.66 -55.96 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000875982938.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.178 kcal (2) G-P(sol) polarization free energy of solvation -61.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.959 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds