Wall clock time and date at job start Tue Mar 31 2020 14:29:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52991 * 109.52445 * 2 1 4 4 C 1.53171 * 109.52198 * 120.12674 * 2 1 3 5 5 C 1.53187 * 109.03697 * 62.92146 * 4 2 1 6 6 C 1.53095 * 109.15948 * 56.98312 * 5 4 2 7 7 H 1.08995 * 109.49092 * 62.38079 * 6 5 4 8 8 C 1.53006 * 109.47836 * 182.40820 * 6 5 4 9 9 N 1.46497 * 109.46731 * 184.94116 * 8 6 5 10 10 C 1.34776 * 119.99515 * 180.02562 * 9 8 6 11 11 O 1.21753 * 120.00305 * 359.97438 * 10 9 8 12 12 C 1.46243 * 119.99686 * 179.97438 * 10 9 8 13 13 S 1.75663 * 125.22980 * 0.02585 * 12 10 9 14 14 C 1.75478 * 92.09326 * 179.97438 * 13 12 10 15 15 C 1.32762 * 111.36086 * 359.97438 * 14 13 12 16 16 C 1.39552 * 125.22499 * 179.71700 * 12 10 9 17 17 C 1.40532 * 123.71384 * 0.02562 * 16 12 10 18 18 H 1.07997 * 120.00589 * 23.44096 * 17 16 12 19 19 C 1.40313 * 119.99997 * 203.43756 * 17 16 12 20 20 N 1.30647 * 119.99683 * 9.79229 * 19 17 16 21 21 Si 1.86801 * 120.00321 * 189.79508 * 19 17 16 22 22 H 1.48497 * 109.46958 * 59.99861 * 21 19 17 23 23 H 1.48497 * 109.47148 * 179.97438 * 21 19 17 24 24 H 1.48494 * 109.46890 * 300.00025 * 21 19 17 25 25 O 1.42909 * 109.41282 * 302.38843 * 6 5 4 26 26 C 1.42902 * 114.09721 * 61.16339 * 25 6 5 27 27 H 1.09003 * 109.47034 * 299.87384 * 1 2 3 28 28 H 1.09004 * 109.46907 * 59.87383 * 1 2 3 29 29 H 1.09003 * 109.47323 * 179.87138 * 1 2 3 30 30 H 1.08997 * 109.47577 * 180.12296 * 3 2 1 31 31 H 1.09008 * 109.47152 * 300.12800 * 3 2 1 32 32 H 1.09001 * 109.47599 * 60.12476 * 3 2 1 33 33 H 1.08995 * 109.54482 * 182.79118 * 4 2 1 34 34 H 1.09003 * 109.54749 * 303.06001 * 4 2 1 35 35 H 1.09001 * 109.51938 * 176.88381 * 5 4 2 36 36 H 1.08994 * 109.52472 * 297.07879 * 5 4 2 37 37 H 1.08994 * 109.46640 * 304.93998 * 8 6 5 38 38 H 1.09001 * 109.46955 * 64.94188 * 8 6 5 39 39 H 0.97002 * 120.00432 * 359.97438 * 9 8 6 40 40 H 1.07990 * 124.31658 * 180.02562 * 14 13 12 41 41 H 1.08002 * 122.78652 * 179.97438 * 15 14 13 42 42 H 0.96995 * 119.99954 * 180.02562 * 20 19 17 43 43 H 1.08997 * 109.48342 * 178.85812 * 26 25 6 44 44 H 1.08997 * 109.48236 * 58.81805 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0413 1.4419 0.0000 4 6 2.0419 -0.7246 1.2486 5 6 1.5875 -2.1867 1.1993 6 6 2.0970 -2.8278 -0.0942 7 1 3.1869 -2.8199 -0.0993 8 6 1.5967 -4.2713 -0.1797 9 7 2.1795 -4.9211 -1.3562 10 6 1.8783 -6.2048 -1.6353 11 8 1.1222 -6.8244 -0.9095 12 6 2.4596 -6.8534 -2.8101 13 16 3.5626 -6.0924 -3.9459 14 6 3.6793 -7.5535 -4.9107 15 6 2.9380 -8.5299 -4.4011 16 6 2.2282 -8.1739 -3.1976 17 6 1.3926 -9.0582 -2.4941 18 1 0.6122 -8.6712 -1.8557 19 6 1.5722 -10.4439 -2.6213 20 7 2.6262 -10.9124 -3.2348 21 14 0.3043 -11.6190 -1.9133 22 1 -1.0133 -11.3681 -2.5506 23 1 0.7237 -13.0185 -2.1791 24 1 0.1944 -11.4044 -0.4481 25 8 1.6097 -2.0874 -1.2152 26 6 2.0415 -0.7256 -1.2473 27 1 -0.3633 0.5119 0.8911 28 1 -0.3633 0.5158 -0.8889 29 1 -0.3634 -1.0277 -0.0023 30 1 3.1313 1.4410 -0.0022 31 1 1.6766 1.9568 -0.8889 32 1 1.6803 1.9555 0.8911 33 1 3.1307 -0.6818 1.2745 34 1 1.6356 -0.2465 2.1400 35 1 1.9940 -2.7235 2.0565 36 1 0.4988 -2.2309 1.2235 37 1 1.8935 -4.8123 0.7187 38 1 0.5099 -4.2748 -0.2636 39 1 2.7816 -4.4274 -1.9346 40 1 4.2783 -7.6467 -5.8044 41 1 2.8743 -9.5105 -4.8492 42 1 2.7502 -11.8703 -3.3231 43 1 1.6453 -0.2394 -2.1387 44 1 3.1307 -0.6900 -1.2673 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000881515451.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:29:48 Heat of formation + Delta-G solvation = -85.361437 kcal Electronic energy + Delta-G solvation = -25047.275252 eV Core-core repulsion = 21475.806229 eV Total energy + Delta-G solvation = -3571.469023 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.13756 -38.16029 -36.10219 -35.49588 -33.85180 -33.01169 -32.13632 -29.12967 -28.17297 -27.50472 -26.25646 -25.60061 -23.52917 -22.03852 -21.48573 -19.91586 -18.99498 -18.70436 -17.55493 -16.46481 -15.85495 -15.71181 -15.44607 -15.20228 -14.89932 -14.48554 -14.20988 -13.94705 -13.77068 -13.41170 -13.24890 -12.77021 -12.43797 -12.41211 -12.18143 -12.11432 -12.03281 -11.91615 -11.74435 -11.53672 -11.37404 -11.24065 -11.04839 -11.02399 -10.88362 -10.56995 -10.42406 -10.25806 -10.09824 -9.58477 -9.42366 -9.20217 -8.38369 -8.15167 -7.43860 -7.09018 -7.00035 -4.47901 2.21280 3.01008 3.03131 3.06926 3.18026 3.68436 3.72495 3.85023 3.89522 4.13132 4.42298 4.50816 4.52509 4.60451 4.88718 4.97951 5.07997 5.20233 5.31184 5.32300 5.39837 5.46616 5.48362 5.56895 5.63002 5.66485 5.75829 5.80263 5.93221 5.95859 5.97472 6.07942 6.11116 6.17020 6.29965 6.73106 6.88782 7.21125 7.22768 7.25174 7.39839 7.52840 7.75702 8.40855 8.52094 8.65703 8.84751 9.65975 9.91129 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.020142 B = 0.002986 C = 0.002688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1389.818703 B = 9374.090155 C =10415.577160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.103 4.103 3 C -0.139 4.139 4 C -0.109 4.109 5 C -0.149 4.149 6 C 0.080 3.920 7 H 0.061 0.939 8 C 0.138 3.862 9 N -0.746 5.746 10 C 0.601 3.399 11 O -0.567 6.567 12 C -0.428 4.428 13 S -0.050 6.050 14 C -0.207 4.207 15 C -0.099 4.099 16 C 0.141 3.859 17 C -0.379 4.379 18 H 0.111 0.889 19 C 0.067 3.933 20 N -0.780 5.780 21 Si 0.926 3.074 22 H -0.259 1.259 23 H -0.277 1.277 24 H -0.259 1.259 25 O -0.367 6.367 26 C 0.071 3.929 27 H 0.051 0.949 28 H 0.053 0.947 29 H 0.066 0.934 30 H 0.055 0.945 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.063 0.937 34 H 0.067 0.933 35 H 0.075 0.925 36 H 0.077 0.923 37 H 0.072 0.928 38 H 0.065 0.935 39 H 0.392 0.608 40 H 0.137 0.863 41 H 0.145 0.855 42 H 0.288 0.712 43 H 0.092 0.908 44 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.442 16.194 4.676 16.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.103 4.103 3 C -0.197 4.197 4 C -0.147 4.147 5 C -0.187 4.187 6 C 0.022 3.978 7 H 0.079 0.921 8 C 0.014 3.986 9 N -0.399 5.399 10 C 0.397 3.603 11 O -0.450 6.450 12 C -0.547 4.547 13 S 0.205 5.795 14 C -0.341 4.341 15 C -0.132 4.132 16 C 0.130 3.870 17 C -0.410 4.410 18 H 0.129 0.871 19 C -0.154 4.154 20 N -0.405 5.405 21 Si 0.749 3.251 22 H -0.184 1.184 23 H -0.202 1.202 24 H -0.183 1.183 25 O -0.285 6.285 26 C -0.006 4.006 27 H 0.070 0.930 28 H 0.072 0.928 29 H 0.085 0.915 30 H 0.074 0.926 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.081 0.919 34 H 0.085 0.915 35 H 0.094 0.906 36 H 0.096 0.904 37 H 0.090 0.910 38 H 0.084 0.916 39 H 0.226 0.774 40 H 0.155 0.845 41 H 0.162 0.838 42 H 0.099 0.901 43 H 0.110 0.890 44 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 0.536 16.867 4.879 17.567 hybrid contribution -0.365 -1.485 0.199 1.542 sum 0.171 15.382 5.078 16.199 Atomic orbital electron populations 1.21824 0.93747 1.02705 1.01229 1.21217 0.97002 0.95686 0.96380 1.21790 1.00894 0.95014 1.01982 1.21651 1.00603 0.95056 0.97380 1.22182 1.02644 0.95953 0.97941 1.22379 0.97719 0.91422 0.86245 0.92084 1.21083 0.98912 0.88638 0.89985 1.45715 1.51960 1.13362 1.28863 1.16838 0.80066 0.79633 0.83724 1.90643 1.38758 1.64111 1.51501 1.22600 1.23470 1.01033 1.07584 1.82726 1.53082 1.17362 1.26292 1.24946 1.07581 0.97422 1.04145 1.21723 0.96760 0.98803 0.95894 1.17926 0.89249 0.89995 0.89873 1.19997 1.12012 0.89239 1.19712 0.87118 1.26377 0.95758 1.00044 0.93229 1.69670 1.24139 1.16320 1.30346 0.86050 0.80735 0.77424 0.80883 1.18375 1.20182 1.18267 1.88043 1.73806 1.21665 1.45016 1.22619 0.98213 0.82517 0.97282 0.93021 0.92770 0.91525 0.92629 0.92443 0.92443 0.91855 0.91464 0.90610 0.90400 0.91019 0.91624 0.77420 0.84541 0.83764 0.90114 0.88996 0.93338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.27 8.07 37.16 0.30 -0.97 16 2 C -0.10 -0.91 0.77 -154.37 -0.12 -1.03 16 3 C -0.14 -1.00 8.49 37.15 0.32 -0.68 16 4 C -0.11 -0.96 4.81 -26.55 -0.13 -1.09 16 5 C -0.15 -1.56 5.05 -26.59 -0.13 -1.69 16 6 C 0.08 1.05 2.68 -26.68 -0.07 0.98 16 7 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 8 C 0.14 2.33 5.34 -4.04 -0.02 2.31 16 9 N -0.75 -15.20 5.50 -61.75 -0.34 -15.53 16 10 C 0.60 15.21 7.76 -13.05 -0.10 15.11 16 11 O -0.57 -15.86 14.45 5.14 0.07 -15.79 16 12 C -0.43 -11.14 6.51 -35.88 -0.23 -11.38 16 13 S -0.05 -1.09 22.25 -107.50 -2.39 -3.49 16 14 C -0.21 -4.60 11.07 28.86 0.32 -4.28 16 15 C -0.10 -2.47 9.04 -39.12 -0.35 -2.82 16 16 C 0.14 3.84 5.67 -106.21 -0.60 3.24 16 17 C -0.38 -10.41 8.52 -37.94 -0.32 -10.73 16 18 H 0.11 3.19 6.04 -52.49 -0.32 2.87 16 19 C 0.07 1.67 5.39 -17.28 -0.09 1.57 16 20 N -0.78 -19.14 10.82 55.57 0.60 -18.54 16 21 Si 0.93 18.84 29.57 -169.99 -5.03 13.81 16 22 H -0.26 -5.21 7.11 56.52 0.40 -4.81 16 23 H -0.28 -5.31 7.11 56.52 0.40 -4.91 16 24 H -0.26 -5.37 7.11 56.52 0.40 -4.97 16 25 O -0.37 -5.10 9.77 -35.23 -0.34 -5.44 16 26 C 0.07 0.75 5.54 37.21 0.21 0.95 16 27 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.07 0.72 6.14 -51.93 -0.32 0.40 16 30 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 31 H 0.06 0.38 8.14 -51.92 -0.42 -0.04 16 32 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 34 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.08 0.84 6.62 -51.93 -0.34 0.50 16 37 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 38 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 39 H 0.39 7.53 7.55 -40.82 -0.31 7.22 16 40 H 0.14 2.57 8.06 -52.49 -0.42 2.14 16 41 H 0.14 3.54 6.41 -52.49 -0.34 3.20 16 42 H 0.29 6.34 8.29 -40.82 -0.34 6.00 16 43 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 44 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 LS Contribution 363.36 15.07 5.48 5.48 Total: -1.00 -29.83 363.36 -9.67 -39.50 By element: Atomic # 1 Polarization: 17.18 SS G_CDS: -6.68 Total: 10.51 kcal Atomic # 6 Polarization: -9.46 SS G_CDS: -1.04 Total: -10.50 kcal Atomic # 7 Polarization: -34.34 SS G_CDS: 0.26 Total: -34.07 kcal Atomic # 8 Polarization: -20.96 SS G_CDS: -0.27 Total: -21.23 kcal Atomic # 14 Polarization: 18.84 SS G_CDS: -5.03 Total: 13.81 kcal Atomic # 16 Polarization: -1.09 SS G_CDS: -2.39 Total: -3.49 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -29.83 -9.67 -39.50 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881515451.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.864 kcal (2) G-P(sol) polarization free energy of solvation -29.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.498 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds