Wall clock time and date at job start Tue Mar 31 2020 14:03:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38308 * 119.92525 * 2 1 4 4 C 1.38085 * 120.07050 * 180.20869 * 3 2 1 5 5 C 1.38903 * 119.92805 * 359.52305 * 4 3 2 6 6 N 1.39920 * 120.06875 * 180.27391 * 5 4 3 7 7 C 1.46502 * 120.00356 * 67.89303 * 6 5 4 8 8 C 1.50699 * 109.46849 * 89.99781 * 7 6 5 9 9 H 1.07990 * 120.00452 * 359.97438 * 8 7 6 10 10 C 1.37883 * 119.99593 * 180.02562 * 8 7 6 11 11 N 1.31515 * 120.00219 * 359.97438 * 10 8 7 12 12 Si 1.86798 * 119.99959 * 180.02562 * 10 8 7 13 13 H 1.48504 * 109.47141 * 359.97438 * 12 10 8 14 14 H 1.48496 * 109.47348 * 119.99339 * 12 10 8 15 15 H 1.48506 * 109.47099 * 239.99764 * 12 10 8 16 16 C 1.34777 * 119.99787 * 247.88824 * 6 5 4 17 17 O 1.21291 * 119.99938 * 4.74350 * 16 6 5 18 18 C 1.50695 * 120.00029 * 184.73645 * 16 6 5 19 19 S 1.81402 * 109.47279 * 180.02562 * 18 16 6 20 20 C 1.81399 * 103.00290 * 180.02562 * 19 18 16 21 21 C 1.53003 * 109.47341 * 179.97438 * 20 19 18 22 22 O 1.42894 * 109.47027 * 180.02562 * 21 20 19 23 23 C 1.38852 * 119.85862 * 0.24877 * 5 4 3 24 24 C 1.38136 * 119.92904 * 0.02562 * 23 5 4 25 25 C 1.50696 * 119.96894 * 180.02562 * 24 23 5 26 26 H 1.09000 * 109.47424 * 270.24432 * 1 2 3 27 27 H 1.08997 * 109.47580 * 30.24987 * 1 2 3 28 28 H 1.09001 * 109.46636 * 150.25060 * 1 2 3 29 29 H 1.08006 * 119.96548 * 0.02562 * 3 2 1 30 30 H 1.08000 * 120.03941 * 179.79250 * 4 3 2 31 31 H 1.09000 * 109.46800 * 209.99919 * 7 6 5 32 32 H 1.08997 * 109.46643 * 330.00000 * 7 6 5 33 33 H 0.96990 * 120.00260 * 180.02562 * 11 10 8 34 34 H 1.09002 * 109.47403 * 300.00607 * 18 16 6 35 35 H 1.09006 * 109.47243 * 60.00791 * 18 16 6 36 36 H 1.08999 * 109.47402 * 300.00288 * 20 19 18 37 37 H 1.09001 * 109.47005 * 60.00118 * 20 19 18 38 38 H 1.08993 * 109.46976 * 300.00121 * 21 20 19 39 39 H 1.09001 * 109.46896 * 60.00147 * 21 20 19 40 40 H 0.96705 * 114.00230 * 179.97438 * 22 21 20 41 41 H 1.07994 * 120.03359 * 180.02562 * 23 5 4 42 42 H 1.09005 * 109.47179 * 89.99329 * 25 24 23 43 43 H 1.08992 * 109.47460 * 210.00216 * 25 24 23 44 44 H 1.09005 * 109.46839 * 330.00157 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1970 1.1987 0.0000 4 6 3.5778 1.2022 -0.0044 5 6 4.2739 0.0002 0.0013 6 7 5.6731 0.0003 0.0027 7 6 6.4045 0.4827 1.1769 8 6 6.6548 -0.6661 2.1196 9 1 6.3038 -1.6563 1.8694 10 6 7.3310 -0.4527 3.3021 11 7 7.7579 0.7533 3.6071 12 14 7.6419 -1.8767 4.4704 13 1 7.0654 -3.1204 3.8993 14 1 9.1043 -2.0505 4.6608 15 1 7.0026 -1.5912 5.7800 16 6 6.3481 -0.4434 -1.0762 17 8 5.7457 -0.7618 -2.0797 18 6 7.8511 -0.5438 -1.0358 19 16 8.4585 -1.1678 -2.6272 20 6 10.2557 -1.2188 -2.3865 21 6 10.9267 -1.7337 -3.6616 22 8 12.3423 -1.7744 -3.4717 23 6 3.5783 -1.2015 0.0061 24 6 2.1969 -1.1982 0.0047 25 6 1.4410 -2.5018 0.0104 26 1 -0.3634 0.0044 1.0276 27 1 -0.3634 0.8877 -0.5177 28 1 -0.3632 -0.8923 -0.5100 29 1 1.6552 2.1330 0.0004 30 1 4.1161 2.1385 -0.0077 31 1 7.3571 0.9084 0.8618 32 1 5.8148 1.2466 1.6835 33 1 8.2339 0.9034 4.4387 34 1 8.2762 0.4419 -0.8463 35 1 8.1485 -1.2269 -0.2401 36 1 10.6210 -0.2166 -2.1626 37 1 10.4924 -1.8855 -1.5573 38 1 10.5614 -2.7360 -3.8850 39 1 10.6900 -1.0673 -4.4911 40 1 12.8335 -2.0924 -4.2417 41 1 4.1166 -2.1377 0.0109 42 1 1.2578 -2.8111 1.0395 43 1 0.4894 -2.3724 -0.5050 44 1 2.0292 -3.2651 -0.4990 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000882077192.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:03:52 Heat of formation + Delta-G solvation = -66.338623 kcal Electronic energy + Delta-G solvation = -24761.405811 eV Core-core repulsion = 21190.761679 eV Total energy + Delta-G solvation = -3570.644132 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.00854 -38.41087 -37.09458 -35.39916 -33.10268 -32.19042 -31.60436 -30.98079 -29.43056 -27.67962 -26.87645 -25.52167 -23.21904 -23.00374 -21.84657 -20.90858 -18.62926 -17.81635 -16.82260 -16.77164 -16.07375 -15.67647 -15.52983 -15.48529 -14.96433 -14.63317 -14.43248 -14.30515 -14.03466 -13.68555 -12.94724 -12.88072 -12.78415 -12.63011 -12.51433 -12.37996 -12.26752 -11.93696 -11.77482 -11.72352 -11.60818 -11.33893 -11.18864 -10.97108 -10.87271 -10.68263 -10.29994 -10.16936 -9.90335 -9.73822 -9.38991 -8.67606 -8.50660 -8.30601 -7.66252 -7.43174 -6.28900 -4.36932 1.55063 1.72165 1.80736 2.70580 3.11751 3.15858 3.25168 3.29426 3.72748 4.09764 4.25983 4.27662 4.85217 4.96558 5.04372 5.06610 5.11010 5.15370 5.30939 5.31711 5.37105 5.48187 5.61157 5.64467 5.64720 5.75839 5.78666 5.83683 5.86652 5.97524 6.02160 6.05348 6.21783 6.45737 6.61201 6.77926 6.91051 6.96000 7.06194 7.21545 7.41590 7.56349 7.66832 7.90553 8.04505 8.64287 8.80070 9.31342 10.78034 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.008703 B = 0.004311 C = 0.003214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3216.524473 B = 6493.607167 C = 8709.541782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.103 4.103 3 C -0.109 4.109 4 C -0.124 4.124 5 C 0.174 3.826 6 N -0.556 5.556 7 C 0.237 3.763 8 C -0.540 4.540 9 H 0.063 0.937 10 C 0.067 3.933 11 N -0.889 5.889 12 Si 0.896 3.104 13 H -0.271 1.271 14 H -0.281 1.281 15 H -0.281 1.281 16 C 0.539 3.461 17 O -0.539 6.539 18 C -0.107 4.107 19 S -0.188 6.188 20 C -0.112 4.112 21 C 0.097 3.903 22 O -0.572 6.572 23 C -0.101 4.101 24 C -0.082 4.082 25 C -0.113 4.113 26 H 0.066 0.934 27 H 0.061 0.939 28 H 0.066 0.934 29 H 0.120 0.880 30 H 0.121 0.879 31 H 0.041 0.959 32 H 0.042 0.958 33 H 0.266 0.734 34 H 0.111 0.889 35 H 0.125 0.875 36 H 0.088 0.912 37 H 0.089 0.911 38 H 0.055 0.945 39 H 0.055 0.945 40 H 0.382 0.618 41 H 0.119 0.881 42 H 0.068 0.932 43 H 0.067 0.933 44 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.597 -2.192 -9.319 10.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.103 4.103 3 C -0.128 4.128 4 C -0.144 4.144 5 C 0.083 3.917 6 N -0.284 5.284 7 C 0.119 3.881 8 C -0.579 4.579 9 H 0.081 0.919 10 C -0.136 4.136 11 N -0.527 5.527 12 Si 0.723 3.277 13 H -0.195 1.195 14 H -0.207 1.207 15 H -0.207 1.207 16 C 0.326 3.674 17 O -0.417 6.417 18 C -0.258 4.258 19 S 0.036 5.964 20 C -0.261 4.261 21 C 0.018 3.982 22 O -0.378 6.378 23 C -0.120 4.120 24 C -0.082 4.082 25 C -0.169 4.169 26 H 0.084 0.916 27 H 0.080 0.920 28 H 0.085 0.915 29 H 0.138 0.862 30 H 0.139 0.861 31 H 0.059 0.941 32 H 0.060 0.940 33 H 0.076 0.924 34 H 0.129 0.871 35 H 0.143 0.857 36 H 0.106 0.894 37 H 0.108 0.892 38 H 0.074 0.926 39 H 0.073 0.927 40 H 0.229 0.771 41 H 0.137 0.863 42 H 0.087 0.913 43 H 0.086 0.914 44 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -4.509 -2.294 -9.988 11.196 hybrid contribution 1.321 -0.410 1.690 2.184 sum -3.187 -2.703 -8.298 9.291 Atomic orbital electron populations 1.20783 0.91697 1.02317 1.01912 1.19630 0.95593 0.92653 1.02461 1.20740 0.93429 0.97216 1.01426 1.21154 0.94180 0.97385 1.01641 1.17465 0.83052 0.92867 0.98287 1.45800 1.03431 1.62209 1.16960 1.19621 0.91794 0.95725 0.80973 1.21461 1.37245 0.95230 1.03936 0.91854 1.24926 0.95080 0.95985 0.97627 1.69918 1.37697 1.20494 1.24605 0.86456 0.78095 0.82328 0.80785 1.19538 1.20700 1.20685 1.19553 0.88113 0.77008 0.82725 1.90685 1.69833 1.49605 1.31549 1.23496 0.96923 1.06695 0.98702 1.86967 1.01005 1.87513 1.20878 1.23317 0.95719 1.05486 1.01541 1.21683 0.80651 1.00158 0.95720 1.86470 1.18169 1.89871 1.43319 1.21061 0.93292 0.97646 1.00016 1.19524 0.93067 0.94808 1.00825 1.20811 0.99722 0.94288 1.02093 0.91552 0.92022 0.91508 0.86201 0.86066 0.94086 0.93996 0.92398 0.87097 0.85653 0.89380 0.89250 0.92626 0.92656 0.77123 0.86278 0.91337 0.91428 0.91790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.23 9.60 36.01 0.35 -0.88 16 2 C -0.10 -1.55 5.88 -104.59 -0.62 -2.17 16 3 C -0.11 -1.71 9.69 -39.61 -0.38 -2.10 16 4 C -0.12 -2.26 9.69 -39.39 -0.38 -2.65 16 5 C 0.17 3.58 4.75 -83.69 -0.40 3.18 16 6 N -0.56 -11.93 2.51 -114.74 -0.29 -12.21 16 7 C 0.24 5.53 4.88 -5.19 -0.03 5.51 16 8 C -0.54 -13.72 9.16 -34.44 -0.32 -14.04 16 9 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 10 C 0.07 1.74 5.46 -17.82 -0.10 1.65 16 11 N -0.89 -23.97 13.29 55.43 0.74 -23.24 16 12 Si 0.90 20.28 29.54 -169.99 -5.02 15.26 16 13 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 14 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 15 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 16 C 0.54 11.34 7.55 -10.99 -0.08 11.26 16 17 O -0.54 -12.39 15.62 5.55 0.09 -12.30 16 18 C -0.11 -1.97 5.09 36.00 0.18 -1.78 16 19 S -0.19 -3.11 20.87 -107.50 -2.24 -5.36 16 20 C -0.11 -1.52 6.31 37.16 0.23 -1.29 16 21 C 0.10 1.09 7.05 37.16 0.26 1.35 16 22 O -0.57 -6.26 13.66 -35.23 -0.48 -6.74 16 23 C -0.10 -1.95 9.20 -39.39 -0.36 -2.31 16 24 C -0.08 -1.33 5.88 -104.65 -0.62 -1.95 16 25 C -0.11 -1.44 9.60 36.00 0.35 -1.09 16 26 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.06 0.60 8.09 -51.93 -0.42 0.18 16 28 H 0.07 0.66 5.94 -51.93 -0.31 0.35 16 29 H 0.12 1.52 8.06 -52.48 -0.42 1.10 16 30 H 0.12 2.09 8.06 -52.49 -0.42 1.67 16 31 H 0.04 0.96 6.47 -51.93 -0.34 0.62 16 32 H 0.04 1.04 7.86 -51.93 -0.41 0.63 16 33 H 0.27 6.83 8.31 -40.82 -0.34 6.49 16 34 H 0.11 1.91 7.26 -51.92 -0.38 1.53 16 35 H 0.13 2.36 7.91 -51.92 -0.41 1.95 16 36 H 0.09 1.18 8.14 -51.92 -0.42 0.76 16 37 H 0.09 1.24 8.14 -51.92 -0.42 0.81 16 38 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.38 2.19 9.12 45.56 0.42 2.61 16 41 H 0.12 2.37 8.06 -52.49 -0.42 1.95 16 42 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 43 H 0.07 0.72 5.94 -51.93 -0.31 0.41 16 44 H 0.06 0.80 8.08 -51.93 -0.42 0.38 16 LS Contribution 382.41 15.07 5.76 5.76 Total: -1.00 -30.80 382.41 -9.28 -40.07 By element: Atomic # 1 Polarization: 12.00 SS G_CDS: -5.92 Total: 6.07 kcal Atomic # 6 Polarization: -5.41 SS G_CDS: -1.91 Total: -7.31 kcal Atomic # 7 Polarization: -35.90 SS G_CDS: 0.45 Total: -35.45 kcal Atomic # 8 Polarization: -18.65 SS G_CDS: -0.39 Total: -19.05 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -5.02 Total: 15.26 kcal Atomic # 16 Polarization: -3.11 SS G_CDS: -2.24 Total: -5.36 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -30.80 -9.28 -40.07 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882077192.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.266 kcal (2) G-P(sol) polarization free energy of solvation -30.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.073 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds