Wall clock time and date at job start Tue Mar 31 2020 14:03:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38308 * 119.92525 * 2 1 4 4 C 1.38085 * 120.07050 * 180.20869 * 3 2 1 5 5 C 1.38903 * 119.92805 * 359.52305 * 4 3 2 6 6 N 1.39920 * 120.06875 * 180.27391 * 5 4 3 7 7 C 1.46502 * 120.00356 * 67.89303 * 6 5 4 8 8 C 1.50699 * 109.46849 * 89.99781 * 7 6 5 9 9 H 1.07990 * 120.00452 * 359.97438 * 8 7 6 10 10 C 1.37883 * 119.99593 * 180.02562 * 8 7 6 11 11 N 1.31515 * 120.00219 * 359.97438 * 10 8 7 12 12 Si 1.86798 * 119.99959 * 180.02562 * 10 8 7 13 13 H 1.48504 * 109.47141 * 359.97438 * 12 10 8 14 14 H 1.48496 * 109.47348 * 119.99339 * 12 10 8 15 15 H 1.48506 * 109.47099 * 239.99764 * 12 10 8 16 16 C 1.34777 * 119.99787 * 247.88824 * 6 5 4 17 17 O 1.21291 * 119.99938 * 4.74350 * 16 6 5 18 18 C 1.50695 * 120.00029 * 184.73645 * 16 6 5 19 19 S 1.81402 * 109.47279 * 180.02562 * 18 16 6 20 20 C 1.81399 * 103.00290 * 180.02562 * 19 18 16 21 21 C 1.53003 * 109.47341 * 179.97438 * 20 19 18 22 22 O 1.42894 * 109.47027 * 180.02562 * 21 20 19 23 23 C 1.38852 * 119.85862 * 0.24877 * 5 4 3 24 24 C 1.38136 * 119.92904 * 0.02562 * 23 5 4 25 25 C 1.50696 * 119.96894 * 180.02562 * 24 23 5 26 26 H 1.09000 * 109.47424 * 270.24432 * 1 2 3 27 27 H 1.08997 * 109.47580 * 30.24987 * 1 2 3 28 28 H 1.09001 * 109.46636 * 150.25060 * 1 2 3 29 29 H 1.08006 * 119.96548 * 0.02562 * 3 2 1 30 30 H 1.08000 * 120.03941 * 179.79250 * 4 3 2 31 31 H 1.09000 * 109.46800 * 209.99919 * 7 6 5 32 32 H 1.08997 * 109.46643 * 330.00000 * 7 6 5 33 33 H 0.96990 * 120.00260 * 180.02562 * 11 10 8 34 34 H 1.09002 * 109.47403 * 300.00607 * 18 16 6 35 35 H 1.09006 * 109.47243 * 60.00791 * 18 16 6 36 36 H 1.08999 * 109.47402 * 300.00288 * 20 19 18 37 37 H 1.09001 * 109.47005 * 60.00118 * 20 19 18 38 38 H 1.08993 * 109.46976 * 300.00121 * 21 20 19 39 39 H 1.09001 * 109.46896 * 60.00147 * 21 20 19 40 40 H 0.96705 * 114.00230 * 179.97438 * 22 21 20 41 41 H 1.07994 * 120.03359 * 180.02562 * 23 5 4 42 42 H 1.09005 * 109.47179 * 89.99329 * 25 24 23 43 43 H 1.08992 * 109.47460 * 210.00216 * 25 24 23 44 44 H 1.09005 * 109.46839 * 330.00157 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1970 1.1987 0.0000 4 6 3.5778 1.2022 -0.0044 5 6 4.2739 0.0002 0.0013 6 7 5.6731 0.0003 0.0027 7 6 6.4045 0.4827 1.1769 8 6 6.6548 -0.6661 2.1196 9 1 6.3038 -1.6563 1.8694 10 6 7.3310 -0.4527 3.3021 11 7 7.7579 0.7533 3.6071 12 14 7.6419 -1.8767 4.4704 13 1 7.0654 -3.1204 3.8993 14 1 9.1043 -2.0505 4.6608 15 1 7.0026 -1.5912 5.7800 16 6 6.3481 -0.4434 -1.0762 17 8 5.7457 -0.7618 -2.0797 18 6 7.8511 -0.5438 -1.0358 19 16 8.4585 -1.1678 -2.6272 20 6 10.2557 -1.2188 -2.3865 21 6 10.9267 -1.7337 -3.6616 22 8 12.3423 -1.7744 -3.4717 23 6 3.5783 -1.2015 0.0061 24 6 2.1969 -1.1982 0.0047 25 6 1.4410 -2.5018 0.0104 26 1 -0.3634 0.0044 1.0276 27 1 -0.3634 0.8877 -0.5177 28 1 -0.3632 -0.8923 -0.5100 29 1 1.6552 2.1330 0.0004 30 1 4.1161 2.1385 -0.0077 31 1 7.3571 0.9084 0.8618 32 1 5.8148 1.2466 1.6835 33 1 8.2339 0.9034 4.4387 34 1 8.2762 0.4419 -0.8463 35 1 8.1485 -1.2269 -0.2401 36 1 10.6210 -0.2166 -2.1626 37 1 10.4924 -1.8855 -1.5573 38 1 10.5614 -2.7360 -3.8850 39 1 10.6900 -1.0673 -4.4911 40 1 12.8335 -2.0924 -4.2417 41 1 4.1166 -2.1377 0.0109 42 1 1.2578 -2.8111 1.0395 43 1 0.4894 -2.3724 -0.5050 44 1 2.0292 -3.2651 -0.4990 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000882077192.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:03:51 Heat of formation + Delta-G solvation = -84.330561 kcal Electronic energy + Delta-G solvation = -24762.186000 eV Core-core repulsion = 21190.761679 eV Total energy + Delta-G solvation = -3571.424321 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.54534 -39.84175 -37.94947 -37.07291 -34.89716 -33.61971 -32.92975 -31.99650 -30.86249 -29.44110 -28.18374 -26.76496 -25.05568 -24.08029 -23.16662 -22.27613 -20.15375 -18.76743 -18.69762 -18.36525 -17.73200 -17.02347 -16.85539 -16.60802 -16.43174 -16.19241 -15.97047 -15.36504 -15.10457 -14.97341 -14.56813 -14.41657 -14.07975 -14.01363 -13.60368 -13.56775 -13.54826 -13.47547 -13.29273 -13.04774 -12.77544 -12.73760 -12.57639 -12.54642 -12.31231 -12.09638 -11.93740 -11.72630 -11.10112 -11.05565 -11.00514 -10.67279 -10.07342 -9.66258 -9.14060 -8.77909 -8.28458 -6.43438 0.22277 0.37904 0.45414 1.35212 1.38099 1.40765 1.45685 1.50934 2.12262 2.35803 2.75444 3.02220 3.44402 3.52843 3.85795 3.89721 3.97192 3.98283 4.07457 4.07980 4.27402 4.33900 4.39697 4.39970 4.48712 4.68857 4.72916 4.76266 4.76338 4.82546 4.87576 4.97809 5.01323 5.05560 5.20431 5.26061 5.44336 5.51757 5.63283 5.70090 5.77236 5.94048 6.13576 6.33141 6.66616 6.84251 7.08986 7.29006 8.77549 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.008703 B = 0.004311 C = 0.003214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3216.524473 B = 6493.607167 C = 8709.541782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.099 4.099 3 C -0.106 4.106 4 C -0.142 4.142 5 C 0.133 3.867 6 N -0.555 5.555 7 C 0.254 3.746 8 C -0.546 4.546 9 H 0.051 0.949 10 C 0.027 3.973 11 N -0.916 5.916 12 Si 0.954 3.046 13 H -0.272 1.272 14 H -0.273 1.273 15 H -0.277 1.277 16 C 0.533 3.467 17 O -0.562 6.562 18 C -0.103 4.103 19 S -0.201 6.201 20 C -0.105 4.105 21 C 0.102 3.898 22 O -0.587 6.587 23 C -0.126 4.126 24 C -0.087 4.087 25 C -0.110 4.110 26 H 0.081 0.919 27 H 0.079 0.921 28 H 0.082 0.918 29 H 0.154 0.846 30 H 0.121 0.879 31 H 0.038 0.962 32 H 0.023 0.977 33 H 0.270 0.730 34 H 0.118 0.882 35 H 0.117 0.883 36 H 0.089 0.911 37 H 0.085 0.915 38 H 0.064 0.936 39 H 0.066 0.934 40 H 0.404 0.596 41 H 0.099 0.901 42 H 0.079 0.921 43 H 0.095 0.905 44 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.872 -2.666 -9.525 11.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.099 4.099 3 C -0.125 4.125 4 C -0.162 4.162 5 C 0.043 3.957 6 N -0.283 5.283 7 C 0.134 3.866 8 C -0.585 4.585 9 H 0.069 0.931 10 C -0.174 4.174 11 N -0.555 5.555 12 Si 0.780 3.220 13 H -0.197 1.197 14 H -0.199 1.199 15 H -0.203 1.203 16 C 0.322 3.678 17 O -0.442 6.442 18 C -0.254 4.254 19 S 0.024 5.976 20 C -0.253 4.253 21 C 0.023 3.977 22 O -0.397 6.397 23 C -0.146 4.146 24 C -0.088 4.088 25 C -0.167 4.167 26 H 0.099 0.901 27 H 0.098 0.902 28 H 0.101 0.899 29 H 0.172 0.828 30 H 0.139 0.861 31 H 0.056 0.944 32 H 0.041 0.959 33 H 0.079 0.921 34 H 0.136 0.864 35 H 0.135 0.865 36 H 0.108 0.892 37 H 0.104 0.896 38 H 0.082 0.918 39 H 0.084 0.916 40 H 0.256 0.744 41 H 0.117 0.883 42 H 0.098 0.902 43 H 0.114 0.886 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -5.783 -2.773 -10.209 12.056 hybrid contribution 1.672 -0.250 1.707 2.403 sum -4.111 -3.023 -8.502 9.916 Atomic orbital electron populations 1.20877 0.88136 1.04085 1.03321 1.20174 0.98075 0.91681 0.99995 1.21174 0.92387 0.99165 0.99741 1.21325 0.95674 0.96592 1.02600 1.17851 0.82626 0.94273 1.00997 1.45729 1.04248 1.61969 1.16334 1.19263 0.91379 0.94625 0.81299 1.21572 1.37141 0.95138 1.04618 0.93086 1.25599 0.94824 0.98106 0.98909 1.69995 1.38317 1.21995 1.25220 0.85555 0.78226 0.79470 0.78798 1.19651 1.19860 1.20279 1.19957 0.89157 0.76444 0.82261 1.90647 1.70607 1.50712 1.32185 1.23373 0.95226 1.06979 0.99777 1.86932 1.03863 1.87372 1.19437 1.23360 0.93238 1.05751 1.02968 1.21584 0.80939 1.00737 0.94419 1.86405 1.17875 1.90187 1.45232 1.21103 0.94943 0.96479 1.02069 1.19973 0.92039 0.97222 0.99542 1.20882 1.00365 0.92253 1.03153 0.90089 0.90164 0.89938 0.82826 0.86120 0.94398 0.95929 0.92093 0.86389 0.86531 0.89204 0.89608 0.91814 0.91562 0.74439 0.88263 0.90210 0.88628 0.92195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.95 9.60 71.24 0.68 -1.27 16 2 C -0.10 -2.77 5.88 -19.84 -0.12 -2.89 16 3 C -0.11 -3.18 9.69 22.25 0.22 -2.96 16 4 C -0.14 -5.32 9.69 22.39 0.22 -5.10 16 5 C 0.13 5.70 4.75 38.16 0.18 5.88 16 6 N -0.56 -25.13 2.51 -635.30 -1.59 -26.72 16 7 C 0.25 12.40 4.88 85.63 0.42 12.82 16 8 C -0.55 -28.67 9.16 25.60 0.23 -28.44 16 9 H 0.05 2.76 7.81 -2.92 -0.02 2.74 16 10 C 0.03 1.40 5.46 84.66 0.46 1.86 16 11 N -0.92 -50.07 13.29 21.45 0.28 -49.78 16 12 Si 0.95 41.85 29.54 68.60 2.03 43.88 16 13 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 14 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16 15 H -0.28 -11.94 7.11 99.48 0.71 -11.24 16 16 C 0.53 23.58 7.55 87.66 0.66 24.25 16 17 O -0.56 -26.95 15.62 -3.06 -0.05 -26.99 16 18 C -0.10 -3.93 5.09 71.23 0.36 -3.57 16 19 S -0.20 -6.72 20.87 -56.49 -1.18 -7.90 16 20 C -0.10 -2.79 6.31 71.98 0.45 -2.33 16 21 C 0.10 2.15 7.05 71.98 0.51 2.66 16 22 O -0.59 -11.77 13.66 -148.98 -2.03 -13.80 16 23 C -0.13 -5.10 9.20 22.39 0.21 -4.89 16 24 C -0.09 -2.79 5.88 -19.88 -0.12 -2.91 16 25 C -0.11 -2.62 9.60 71.23 0.68 -1.93 16 26 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 27 H 0.08 1.20 8.09 -2.39 -0.02 1.18 16 28 H 0.08 1.26 5.94 -2.39 -0.01 1.24 16 29 H 0.15 3.46 8.06 -2.91 -0.02 3.43 16 30 H 0.12 4.35 8.06 -2.91 -0.02 4.32 16 31 H 0.04 1.86 6.47 -2.39 -0.02 1.84 16 32 H 0.02 1.18 7.86 -2.39 -0.02 1.16 16 33 H 0.27 13.91 8.31 -92.72 -0.77 13.14 16 34 H 0.12 4.24 7.26 -2.39 -0.02 4.22 16 35 H 0.12 4.60 7.91 -2.39 -0.02 4.59 16 36 H 0.09 2.36 8.14 -2.39 -0.02 2.34 16 37 H 0.09 2.35 8.14 -2.39 -0.02 2.33 16 38 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 39 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 40 H 0.40 3.77 9.12 -74.05 -0.68 3.09 16 41 H 0.10 4.24 8.06 -2.91 -0.02 4.22 16 42 H 0.08 1.73 8.14 -2.38 -0.02 1.71 16 43 H 0.10 1.71 5.94 -2.39 -0.01 1.70 16 44 H 0.06 1.46 8.08 -2.38 -0.02 1.44 16 Total: -1.00 -67.84 382.41 2.84 -65.00 By element: Atomic # 1 Polarization: 24.82 SS G_CDS: 0.33 Total: 25.15 kcal Atomic # 6 Polarization: -13.88 SS G_CDS: 5.05 Total: -8.83 kcal Atomic # 7 Polarization: -75.20 SS G_CDS: -1.31 Total: -76.50 kcal Atomic # 8 Polarization: -38.71 SS G_CDS: -2.08 Total: -40.80 kcal Atomic # 14 Polarization: 41.85 SS G_CDS: 2.03 Total: 43.88 kcal Atomic # 16 Polarization: -6.72 SS G_CDS: -1.18 Total: -7.90 kcal Total: -67.84 2.84 -65.00 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882077192.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.333 kcal (2) G-P(sol) polarization free energy of solvation -67.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds