Wall clock time and date at job start Tue Mar 31 2020 13:44:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 115.55922 * 2 1 4 4 C 1.53072 * 117.49529 * 214.28649 * 2 1 3 5 5 C 1.53001 * 117.49431 * 145.68406 * 2 1 3 6 6 C 1.52992 * 117.50282 * 359.97438 * 5 2 1 7 7 C 1.53003 * 117.49574 * 214.98015 * 5 2 1 8 8 N 1.46504 * 109.47218 * 206.06519 * 7 5 2 9 9 S 1.65595 * 120.00052 * 195.82697 * 8 7 5 10 10 O 1.42100 * 106.40501 * 309.16857 * 9 8 7 11 11 O 1.42094 * 106.40291 * 176.24758 * 9 8 7 12 12 C 1.76203 * 107.21953 * 62.70625 * 9 8 7 13 13 C 1.37635 * 120.13015 * 244.24153 * 12 9 8 14 14 C 1.38613 * 120.24889 * 179.97438 * 13 12 9 15 15 C 1.38654 * 120.50114 * 0.02562 * 14 13 12 16 16 C 1.37604 * 120.25045 * 359.97438 * 15 14 13 17 17 C 1.40699 * 120.12545 * 64.21159 * 12 9 8 18 18 C 1.41401 * 120.24413 * 0.02562 * 17 12 9 19 19 H 1.07991 * 119.99964 * 328.80999 * 18 17 12 20 20 C 1.39949 * 119.99955 * 148.80902 * 18 17 12 21 21 N 1.30828 * 119.99734 * 351.26017 * 20 18 17 22 22 Si 1.86794 * 119.99855 * 171.26154 * 20 18 17 23 23 H 1.48497 * 109.47507 * 5.00780 * 22 20 18 24 24 H 1.48504 * 109.46972 * 125.00740 * 22 20 18 25 25 H 1.48499 * 109.47224 * 245.00489 * 22 20 18 26 26 H 1.08999 * 109.47274 * 274.31668 * 1 2 3 27 27 H 1.08997 * 109.47051 * 34.31757 * 1 2 3 28 28 H 1.08998 * 109.46971 * 154.31201 * 1 2 3 29 29 H 1.09009 * 109.46857 * 210.24439 * 3 2 1 30 30 H 1.09003 * 109.47282 * 330.24283 * 3 2 1 31 31 H 1.08999 * 109.47764 * 90.24914 * 3 2 1 32 32 H 1.08997 * 117.51459 * 145.04030 * 4 2 1 33 33 H 1.09001 * 117.49154 * 359.97438 * 4 2 1 34 34 H 1.08997 * 109.47403 * 268.54222 * 6 5 2 35 35 H 1.09010 * 109.47057 * 28.54666 * 6 5 2 36 36 H 1.09001 * 109.47020 * 148.53906 * 6 5 2 37 37 H 1.09003 * 109.47104 * 86.06418 * 7 5 2 38 38 H 1.09001 * 109.47149 * 326.06745 * 7 5 2 39 39 H 0.96998 * 119.99685 * 15.82467 * 8 7 5 40 40 H 1.07996 * 119.87650 * 0.24996 * 13 12 9 41 41 H 1.07997 * 119.75123 * 179.97438 * 14 13 12 42 42 H 1.08005 * 119.87710 * 179.97438 * 15 14 13 43 43 H 1.08001 * 120.12694 * 180.02562 * 16 15 14 44 44 H 0.97002 * 119.99148 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1901 1.3802 0.0000 4 6 2.2367 -1.1219 -0.7649 5 6 2.2363 -1.1210 0.7651 6 6 1.3587 -2.1557 1.4721 7 6 3.5489 -0.7758 1.4716 8 7 4.3682 -1.9838 1.5971 9 16 5.6479 -2.0108 2.6478 10 8 6.4229 -0.8535 2.3662 11 8 6.1758 -3.3294 2.6034 12 6 4.9959 -1.7903 4.2698 13 6 5.3240 -0.6707 5.0000 14 6 4.8121 -0.4945 6.2760 15 6 3.9655 -1.4416 6.8317 16 6 3.6238 -2.5686 6.1199 17 6 4.1372 -2.7577 4.8233 18 6 3.7929 -3.9118 4.0824 19 1 3.7312 -3.8636 3.0053 20 6 3.5323 -5.1167 4.7449 21 7 3.7714 -5.2233 6.0268 22 14 2.8432 -6.5726 3.7990 23 1 2.7770 -6.2375 2.3539 24 1 3.7249 -7.7516 3.9939 25 1 1.4800 -6.8862 4.2974 26 1 -0.3634 0.0773 1.0247 27 1 -0.3633 0.8488 -0.5794 28 1 -0.3633 -0.9261 -0.4455 29 1 3.1478 1.3249 -0.5177 30 1 1.5420 2.0930 -0.5101 31 1 2.3509 1.7062 1.0276 32 1 3.1719 -0.8767 -1.2681 33 1 1.6113 -1.8597 -1.2675 34 1 1.1721 -1.8345 2.4969 35 1 0.4106 -2.2506 0.9426 36 1 1.8682 -3.1193 1.4804 37 1 3.3340 -0.3779 2.4634 38 1 4.0892 -0.0291 0.8898 39 1 4.1611 -2.7678 1.0648 40 1 5.9794 0.0754 4.5755 41 1 5.0752 0.3869 6.8420 42 1 3.5727 -1.2942 7.8269 43 1 2.9639 -3.3048 6.5545 44 1 3.5904 -6.0584 6.4860 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000882580054.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:44:06 Heat of formation + Delta-G solvation = -50.311313 kcal Electronic energy + Delta-G solvation = -26561.568718 eV Core-core repulsion = 22991.619582 eV Total energy + Delta-G solvation = -3569.949136 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.32007 -37.59015 -36.17726 -34.80063 -34.23274 -33.80989 -30.23181 -30.12251 -29.56180 -28.21757 -26.97554 -25.60316 -25.11195 -21.65851 -21.13871 -20.42154 -18.76535 -17.86844 -17.66629 -16.64610 -16.16466 -15.53131 -15.32095 -14.86946 -14.58051 -14.32810 -14.06606 -13.68270 -13.45248 -13.26827 -13.11108 -12.75387 -12.49719 -12.26966 -12.18463 -12.08387 -11.90924 -11.81092 -11.50349 -11.40868 -11.28338 -11.15817 -11.12390 -11.06545 -10.98735 -10.74558 -10.63452 -10.46954 -9.89024 -9.65454 -9.47335 -9.40640 -9.27574 -8.70864 -8.03141 -7.57416 -7.00092 -4.75346 1.56433 2.33528 2.72414 2.97288 3.02977 3.10066 3.61932 3.78299 4.07750 4.43093 4.62849 4.73247 4.79672 4.84961 5.07078 5.15821 5.29734 5.52006 5.61654 5.65095 5.78361 5.83440 5.84743 5.89157 5.90894 5.94162 6.03364 6.07730 6.10953 6.20802 6.24201 6.27661 6.35589 6.38444 6.48591 6.60259 6.80215 6.95618 7.08973 7.31652 7.49117 7.59086 7.69541 7.80350 7.90364 8.29523 8.52650 8.65174 9.93478 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.010728 B = 0.005970 C = 0.005019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2609.469141 B = 4688.732952 C = 5577.539450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.120 4.120 3 C -0.119 4.119 4 C -0.168 4.168 5 C -0.121 4.121 6 C -0.116 4.116 7 C 0.166 3.834 8 N -1.117 6.117 9 S 2.700 3.300 10 O -0.999 6.999 11 O -0.965 6.965 12 C -0.772 4.772 13 C -0.005 4.005 14 C -0.248 4.248 15 C -0.077 4.077 16 C -0.155 4.155 17 C 0.190 3.810 18 C -0.447 4.447 19 H 0.088 0.912 20 C 0.081 3.919 21 N -0.781 5.781 22 Si 0.914 3.086 23 H -0.255 1.255 24 H -0.270 1.270 25 H -0.270 1.270 26 H 0.061 0.939 27 H 0.056 0.944 28 H 0.056 0.944 29 H 0.059 0.941 30 H 0.057 0.943 31 H 0.063 0.937 32 H 0.094 0.906 33 H 0.092 0.908 34 H 0.066 0.934 35 H 0.053 0.947 36 H 0.067 0.933 37 H 0.075 0.925 38 H 0.063 0.937 39 H 0.411 0.589 40 H 0.108 0.892 41 H 0.094 0.906 42 H 0.093 0.907 43 H 0.124 0.876 44 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.455 5.716 -8.571 12.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.121 4.121 3 C -0.176 4.176 4 C -0.204 4.204 5 C -0.122 4.122 6 C -0.173 4.173 7 C 0.039 3.961 8 N -0.874 5.874 9 S 2.798 3.202 10 O -0.990 6.990 11 O -0.956 6.956 12 C -0.867 4.867 13 C -0.025 4.025 14 C -0.268 4.268 15 C -0.096 4.096 16 C -0.175 4.175 17 C 0.185 3.815 18 C -0.476 4.476 19 H 0.106 0.894 20 C -0.140 4.140 21 N -0.405 5.405 22 Si 0.738 3.262 23 H -0.178 1.178 24 H -0.195 1.195 25 H -0.195 1.195 26 H 0.080 0.920 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.078 0.922 30 H 0.076 0.924 31 H 0.082 0.918 32 H 0.112 0.888 33 H 0.110 0.890 34 H 0.085 0.915 35 H 0.072 0.928 36 H 0.085 0.915 37 H 0.093 0.907 38 H 0.081 0.919 39 H 0.245 0.755 40 H 0.126 0.874 41 H 0.112 0.888 42 H 0.111 0.889 43 H 0.142 0.858 44 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -6.510 5.598 -8.547 12.115 hybrid contribution -0.869 -0.970 0.206 1.318 sum -7.378 4.628 -8.342 12.060 Atomic orbital electron populations 1.21338 0.92174 1.01480 1.01914 1.21636 0.94637 0.91273 1.04509 1.21405 1.00004 0.93934 1.02241 1.23353 1.02202 1.00965 0.93928 1.21791 0.97270 1.00009 0.93135 1.21315 0.97692 0.97930 1.00339 1.20576 0.88723 0.86325 1.00480 1.55609 1.50579 1.22031 1.59208 1.01096 0.72506 0.72746 0.73901 1.93446 1.67969 1.52219 1.85350 1.93540 1.76871 1.38037 1.87112 1.29913 1.23867 1.09354 1.23554 1.20266 0.94516 0.93872 0.93872 1.20497 1.07704 1.01314 0.97299 1.20912 0.96610 0.94543 0.97560 1.21505 1.02889 0.96808 0.96296 1.17002 0.84286 0.88638 0.91572 1.19859 1.39227 0.93158 0.95336 0.89372 1.25918 0.92383 1.00764 0.94916 1.69780 1.33141 1.27746 1.09810 0.86140 0.78921 0.80053 0.81120 1.17781 1.19463 1.19488 0.92035 0.92469 0.92521 0.92210 0.92361 0.91849 0.88765 0.88957 0.91487 0.92784 0.91457 0.90674 0.91881 0.75544 0.87447 0.88757 0.88855 0.85834 0.90291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.08 8.56 37.16 0.32 -0.76 16 2 C -0.12 -1.32 2.70 -154.47 -0.42 -1.74 16 3 C -0.12 -1.22 8.60 37.16 0.32 -0.90 16 4 C -0.17 -1.89 9.26 -26.69 -0.25 -2.13 16 5 C -0.12 -1.57 2.18 -154.51 -0.34 -1.91 16 6 C -0.12 -1.57 9.17 37.15 0.34 -1.23 16 7 C 0.17 2.54 5.43 -4.04 -0.02 2.52 16 8 N -1.12 -19.54 4.85 -10.61 -0.05 -19.60 16 9 S 2.70 59.12 4.95 -107.50 -0.53 58.59 16 10 O -1.00 -22.88 16.78 -57.17 -0.96 -23.84 16 11 O -0.97 -24.09 16.69 -57.17 -0.95 -25.04 16 12 C -0.77 -18.27 5.64 -38.87 -0.22 -18.49 16 13 C -0.01 -0.12 9.53 -39.66 -0.38 -0.50 16 14 C -0.25 -5.37 10.05 -39.29 -0.39 -5.77 16 15 C -0.08 -1.72 10.02 -39.66 -0.40 -2.11 16 16 C -0.16 -3.78 8.64 -38.87 -0.34 -4.12 16 17 C 0.19 4.74 5.53 -106.82 -0.59 4.15 16 18 C -0.45 -10.95 7.58 -37.74 -0.29 -11.23 16 19 H 0.09 2.01 5.87 -52.49 -0.31 1.70 16 20 C 0.08 1.92 5.28 -17.34 -0.09 1.83 16 21 N -0.78 -19.14 10.90 55.55 0.61 -18.54 16 22 Si 0.91 17.94 29.57 -169.99 -5.03 12.92 16 23 H -0.25 -4.85 7.11 56.52 0.40 -4.44 16 24 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 25 H -0.27 -5.07 7.11 56.52 0.40 -4.66 16 26 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 27 H 0.06 0.48 7.88 -51.93 -0.41 0.07 16 28 H 0.06 0.52 7.22 -51.93 -0.37 0.15 16 29 H 0.06 0.61 7.44 -51.92 -0.39 0.22 16 30 H 0.06 0.51 7.86 -51.93 -0.41 0.11 16 31 H 0.06 0.68 8.04 -51.93 -0.42 0.26 16 32 H 0.09 1.04 8.04 -51.93 -0.42 0.63 16 33 H 0.09 0.96 8.05 -51.93 -0.42 0.54 16 34 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.05 0.63 6.51 -51.92 -0.34 0.29 16 36 H 0.07 0.98 7.98 -51.93 -0.41 0.57 16 37 H 0.08 1.22 7.87 -51.93 -0.41 0.81 16 38 H 0.06 0.92 6.85 -51.93 -0.36 0.56 16 39 H 0.41 6.56 8.30 -34.47 -0.29 6.27 16 40 H 0.11 2.25 7.33 -52.49 -0.38 1.87 16 41 H 0.09 1.78 8.06 -52.49 -0.42 1.36 16 42 H 0.09 1.81 8.06 -52.48 -0.42 1.38 16 43 H 0.12 3.04 6.34 -52.49 -0.33 2.71 16 44 H 0.29 6.32 8.30 -40.82 -0.34 5.98 16 LS Contribution 365.49 15.07 5.51 5.51 Total: -1.00 -29.59 365.49 -10.63 -40.23 By element: Atomic # 1 Polarization: 18.66 SS G_CDS: -6.48 Total: 12.17 kcal Atomic # 6 Polarization: -39.66 SS G_CDS: -2.74 Total: -42.40 kcal Atomic # 7 Polarization: -38.69 SS G_CDS: 0.55 Total: -38.13 kcal Atomic # 8 Polarization: -46.97 SS G_CDS: -1.91 Total: -48.88 kcal Atomic # 14 Polarization: 17.94 SS G_CDS: -5.03 Total: 12.92 kcal Atomic # 16 Polarization: 59.12 SS G_CDS: -0.53 Total: 58.59 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -29.59 -10.63 -40.23 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882580054.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.083 kcal (2) G-P(sol) polarization free energy of solvation -29.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.228 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds