Wall clock time and date at job start Tue Mar 31 2020 14:29:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50705 * 109.87063 * 2 1 4 4 C 1.38227 * 120.00004 * 31.20235 * 3 2 1 5 5 C 1.38239 * 120.00113 * 179.81441 * 4 3 2 6 6 C 1.38233 * 119.99733 * 0.39093 * 5 4 3 7 7 C 1.38238 * 119.99998 * 359.86164 * 6 5 4 8 8 C 1.38233 * 119.99853 * 211.47688 * 3 2 1 9 9 C 1.54320 * 109.88627 * 121.17582 * 2 1 3 10 10 C 1.55155 * 102.94600 * 97.22355 * 9 2 1 11 11 C 1.54693 * 101.67170 * 35.33784 * 10 9 2 12 12 N 1.47023 * 109.88211 * 238.98699 * 2 1 3 13 13 S 1.65590 * 125.65333 * 59.48388 * 12 2 1 14 14 O 1.42098 * 104.28420 * 147.38703 * 13 12 2 15 15 O 1.42102 * 104.27883 * 19.52482 * 13 12 2 16 16 C 1.81399 * 104.45080 * 263.45796 * 13 12 2 17 17 C 1.52999 * 109.47669 * 175.79582 * 16 13 12 18 18 C 1.50692 * 109.47668 * 180.02562 * 17 16 13 19 19 H 1.08004 * 119.99912 * 359.97438 * 18 17 16 20 20 C 1.37875 * 120.00558 * 180.02562 * 18 17 16 21 21 N 1.31520 * 119.99827 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 120.00292 * 179.97438 * 20 18 17 23 23 H 1.48495 * 109.47201 * 269.99886 * 22 20 18 24 24 H 1.48497 * 109.47325 * 30.00243 * 22 20 18 25 25 H 1.48503 * 109.46925 * 149.99713 * 22 20 18 26 26 H 1.09003 * 109.47063 * 181.01573 * 1 2 3 27 27 H 1.08994 * 109.46970 * 301.01278 * 1 2 3 28 28 H 1.08998 * 109.47617 * 61.01809 * 1 2 3 29 29 H 1.08005 * 120.00377 * 359.97438 * 4 3 2 30 30 H 1.08003 * 120.00060 * 180.23444 * 5 4 3 31 31 H 1.07998 * 120.00064 * 179.83855 * 6 5 4 32 32 H 1.08001 * 119.99824 * 179.97438 * 7 6 5 33 33 H 1.08006 * 120.00236 * 359.97438 * 8 3 2 34 34 H 1.08999 * 110.72039 * 215.59014 * 9 2 1 35 35 H 1.09000 * 110.71692 * 338.86308 * 9 2 1 36 36 H 1.08994 * 111.00655 * 153.57467 * 10 9 2 37 37 H 1.09000 * 111.00500 * 277.39473 * 10 9 2 38 38 H 1.09005 * 110.39107 * 204.36295 * 11 10 9 39 39 H 1.09003 * 110.23499 * 82.11395 * 11 10 9 40 40 H 1.09003 * 109.47278 * 55.79368 * 16 13 12 41 41 H 1.09001 * 109.47393 * 295.79977 * 16 13 12 42 42 H 1.09003 * 109.46945 * 59.99582 * 17 16 13 43 43 H 1.09001 * 109.47035 * 300.00614 * 17 16 13 44 44 H 0.96995 * 120.00126 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0422 1.4173 0.0000 4 6 1.3142 2.4153 0.6202 5 6 1.7859 3.7147 0.6235 6 6 2.9818 4.0175 -0.0004 7 6 3.7073 3.0203 -0.6251 8 6 3.2373 1.7203 -0.6251 9 6 2.0549 -0.7512 1.2416 10 6 2.3519 -2.1704 0.6894 11 6 2.8524 -1.8519 -0.7393 12 7 2.0300 -0.7124 -1.1850 13 16 1.7157 -0.3063 -2.7592 14 8 2.8938 -0.6810 -3.4598 15 8 1.3022 1.0517 -2.6950 16 6 0.3270 -1.3727 -3.2333 17 6 -0.1297 -1.0163 -4.6493 18 6 -1.2837 -1.9019 -5.0429 19 1 -1.6542 -2.6449 -4.3522 20 6 -1.8661 -1.7642 -6.2850 21 7 -1.4146 -0.8597 -7.1263 22 14 -3.2962 -2.8624 -6.7730 23 1 -2.7767 -4.0901 -7.4273 24 1 -4.0690 -3.2364 -5.5615 25 1 -4.1797 -2.1337 -7.7183 26 1 -0.3633 -1.0275 0.0182 27 1 -0.3633 0.5295 0.8807 28 1 -0.3634 0.4979 -0.8989 29 1 0.3780 2.1795 1.1044 30 1 1.2189 4.4938 1.1113 31 1 3.3490 5.0331 0.0000 32 1 4.6413 3.2569 -1.1129 33 1 3.8042 0.9412 -1.1131 34 1 2.9657 -0.2853 1.6177 35 1 1.2918 -0.7918 2.0189 36 1 3.1271 -2.6635 1.2758 37 1 1.4454 -2.7748 0.6571 38 1 2.6998 -2.7092 -1.3951 39 1 3.9060 -1.5734 -0.7164 40 1 -0.4987 -1.2249 -2.5372 41 1 0.6435 -2.4154 -3.2052 42 1 0.6961 -1.1642 -5.3454 43 1 -0.4462 0.0263 -4.6774 44 1 -1.8240 -0.7631 -8.0003 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000882689747.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:29:57 Heat of formation + Delta-G solvation = -47.111716 kcal Electronic energy + Delta-G solvation = -26476.913070 eV Core-core repulsion = 22907.102679 eV Total energy + Delta-G solvation = -3569.810391 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.20760 -37.88286 -36.56294 -35.37301 -33.89550 -32.65296 -31.23638 -31.14013 -30.58294 -29.20733 -26.02458 -25.55156 -23.05177 -22.31720 -21.86283 -21.40428 -20.27973 -18.38650 -17.62542 -16.61011 -16.45683 -16.15526 -15.38586 -15.19023 -14.75101 -14.65757 -14.54269 -13.95045 -13.84238 -13.48646 -13.35887 -13.25644 -13.08330 -12.52653 -12.51255 -12.33933 -12.01000 -11.75738 -11.65280 -11.50479 -11.47077 -11.33394 -11.21146 -11.08241 -10.96435 -10.82856 -10.75242 -10.65407 -10.40790 -10.35958 -9.76442 -9.34288 -8.87430 -8.75958 -8.50477 -8.49065 -6.12384 -4.18134 0.75795 1.48090 1.55222 3.05639 3.25726 3.31838 3.34594 3.87990 4.27243 4.30489 4.38109 4.48975 4.62930 4.81819 4.89523 4.96211 5.06979 5.11699 5.19569 5.22606 5.33230 5.39783 5.49142 5.56695 5.62499 5.66452 5.68509 5.71326 5.72763 5.78450 5.88154 6.04835 6.07222 6.13689 6.17855 6.26469 6.49441 6.50926 6.59110 6.63337 6.80390 7.12996 7.29450 7.35973 7.80386 8.17483 8.85147 9.46569 10.98724 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.016905 B = 0.003988 C = 0.003729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1655.956928 B = 7019.150823 C = 7506.789024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.222 3.778 3 C -0.074 4.074 4 C -0.109 4.109 5 C -0.121 4.121 6 C -0.124 4.124 7 C -0.117 4.117 8 C -0.102 4.102 9 C -0.113 4.113 10 C -0.130 4.130 11 C 0.120 3.880 12 N -1.009 6.009 13 S 2.597 3.403 14 O -0.966 6.966 15 O -0.946 6.946 16 C -0.592 4.592 17 C 0.029 3.971 18 C -0.520 4.520 19 H 0.061 0.939 20 C 0.058 3.942 21 N -0.890 5.890 22 Si 0.900 3.100 23 H -0.278 1.278 24 H -0.273 1.273 25 H -0.284 1.284 26 H 0.069 0.931 27 H 0.075 0.925 28 H 0.072 0.928 29 H 0.123 0.877 30 H 0.119 0.881 31 H 0.117 0.883 32 H 0.119 0.881 33 H 0.115 0.885 34 H 0.077 0.923 35 H 0.082 0.918 36 H 0.081 0.919 37 H 0.077 0.923 38 H 0.075 0.925 39 H 0.068 0.932 40 H 0.120 0.880 41 H 0.117 0.883 42 H 0.030 0.970 43 H 0.034 0.966 44 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.880 2.166 20.343 21.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.134 3.866 3 C -0.075 4.075 4 C -0.128 4.128 5 C -0.139 4.139 6 C -0.142 4.142 7 C -0.135 4.135 8 C -0.120 4.120 9 C -0.152 4.152 10 C -0.169 4.169 11 C -0.006 4.006 12 N -0.843 5.843 13 S 2.697 3.303 14 O -0.956 6.956 15 O -0.936 6.936 16 C -0.725 4.725 17 C -0.010 4.010 18 C -0.559 4.559 19 H 0.079 0.921 20 C -0.145 4.145 21 N -0.528 5.528 22 Si 0.727 3.273 23 H -0.204 1.204 24 H -0.197 1.197 25 H -0.210 1.210 26 H 0.088 0.912 27 H 0.094 0.906 28 H 0.091 0.909 29 H 0.141 0.859 30 H 0.137 0.863 31 H 0.135 0.865 32 H 0.137 0.863 33 H 0.133 0.867 34 H 0.095 0.905 35 H 0.101 0.899 36 H 0.099 0.901 37 H 0.096 0.904 38 H 0.094 0.906 39 H 0.086 0.914 40 H 0.138 0.862 41 H 0.135 0.865 42 H 0.048 0.952 43 H 0.053 0.947 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 8.355 2.923 19.578 21.486 hybrid contribution -1.227 -1.020 -0.414 1.648 sum 7.128 1.903 19.164 20.535 Atomic orbital electron populations 1.22481 0.93756 1.03100 1.04008 1.19398 0.93534 0.88152 0.85498 1.19956 0.94920 0.94683 0.97943 1.20960 0.99241 0.92589 0.99968 1.21055 0.96384 0.96332 1.00102 1.21079 0.95595 0.98897 0.98649 1.21081 1.00026 0.93046 0.99354 1.20920 0.95909 0.96663 0.98525 1.22695 1.01804 0.94965 0.95716 1.22764 1.01966 0.96719 0.95465 1.21907 0.94941 0.88092 0.95638 1.59104 1.63540 1.39879 1.21824 1.05579 0.77055 0.76200 0.71450 1.93535 1.45849 1.85039 1.71204 1.93584 1.84191 1.31340 1.84500 1.30562 1.16739 1.14324 1.10919 1.18947 0.98081 0.98643 0.85293 1.20991 1.15542 1.18980 1.00396 0.92061 1.25070 0.97434 0.95562 0.96392 1.69959 1.41583 1.33415 1.07886 0.86472 0.81937 0.80397 0.78505 1.20440 1.19740 1.20967 0.91175 0.90631 0.90892 0.85911 0.86302 0.86453 0.86341 0.86696 0.90469 0.89915 0.90055 0.90396 0.90637 0.91414 0.86201 0.86504 0.95173 0.94728 0.92517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.07 7.62 37.16 0.28 -1.78 16 2 C 0.22 2.75 0.68 -131.99 -0.09 2.66 16 3 C -0.07 -1.03 3.49 -104.63 -0.36 -1.39 16 4 C -0.11 -1.38 9.15 -39.59 -0.36 -1.74 16 5 C -0.12 -1.45 10.05 -39.58 -0.40 -1.85 16 6 C -0.12 -1.53 10.05 -39.58 -0.40 -1.93 16 7 C -0.12 -1.60 10.05 -39.58 -0.40 -2.00 16 8 C -0.10 -1.53 8.08 -39.59 -0.32 -1.85 16 9 C -0.11 -1.01 6.01 -24.90 -0.15 -1.16 16 10 C -0.13 -1.07 7.07 -24.70 -0.17 -1.25 16 11 C 0.12 1.34 6.97 -2.64 -0.02 1.33 16 12 N -1.01 -14.40 2.01 -99.00 -0.20 -14.60 16 13 S 2.60 49.72 4.70 -107.50 -0.51 49.22 16 14 O -0.97 -21.00 17.71 -57.54 -1.02 -22.02 16 15 O -0.95 -20.26 14.69 -57.54 -0.85 -21.11 16 16 C -0.59 -11.86 6.12 37.16 0.23 -11.63 16 17 C 0.03 0.77 4.98 -27.89 -0.14 0.63 16 18 C -0.52 -14.54 9.11 -34.44 -0.31 -14.86 16 19 H 0.06 1.62 7.74 -52.48 -0.41 1.21 16 20 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 21 N -0.89 -26.75 13.29 55.43 0.74 -26.02 16 22 Si 0.90 21.31 29.54 -169.99 -5.02 16.29 16 23 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 24 H -0.27 -6.26 7.11 56.52 0.40 -5.85 16 25 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 26 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.07 0.70 6.48 -51.93 -0.34 0.36 16 28 H 0.07 1.04 7.07 -51.93 -0.37 0.68 16 29 H 0.12 1.26 6.21 -52.48 -0.33 0.94 16 30 H 0.12 1.11 8.06 -52.48 -0.42 0.69 16 31 H 0.12 1.15 8.06 -52.49 -0.42 0.72 16 32 H 0.12 1.39 8.06 -52.49 -0.42 0.96 16 33 H 0.12 1.76 7.23 -52.48 -0.38 1.38 16 34 H 0.08 0.68 7.85 -51.93 -0.41 0.27 16 35 H 0.08 0.60 7.83 -51.93 -0.41 0.19 16 36 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.12 2.16 7.90 -51.92 -0.41 1.75 16 41 H 0.12 2.12 8.14 -51.92 -0.42 1.69 16 42 H 0.03 0.84 8.14 -51.93 -0.42 0.41 16 43 H 0.03 0.96 8.14 -51.93 -0.42 0.53 16 44 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 364.07 15.07 5.49 5.49 Total: -1.00 -35.12 364.07 -10.90 -46.03 By element: Atomic # 1 Polarization: 8.81 SS G_CDS: -6.83 Total: 1.98 kcal Atomic # 6 Polarization: -32.55 SS G_CDS: -2.71 Total: -35.26 kcal Atomic # 7 Polarization: -41.15 SS G_CDS: 0.54 Total: -40.62 kcal Atomic # 8 Polarization: -41.26 SS G_CDS: -1.86 Total: -43.12 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Atomic # 16 Polarization: 49.72 SS G_CDS: -0.51 Total: 49.22 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -35.12 -10.90 -46.03 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882689747.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.085 kcal (2) G-P(sol) polarization free energy of solvation -35.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.027 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds