Wall clock time and date at job start Tue Mar 31 2020 14:29:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50705 * 109.87063 * 2 1 4 4 C 1.38227 * 120.00004 * 31.20235 * 3 2 1 5 5 C 1.38239 * 120.00113 * 179.81441 * 4 3 2 6 6 C 1.38233 * 119.99733 * 0.39093 * 5 4 3 7 7 C 1.38238 * 119.99998 * 359.86164 * 6 5 4 8 8 C 1.38233 * 119.99853 * 211.47688 * 3 2 1 9 9 C 1.54320 * 109.88627 * 121.17582 * 2 1 3 10 10 C 1.55155 * 102.94600 * 97.22355 * 9 2 1 11 11 C 1.54693 * 101.67170 * 35.33784 * 10 9 2 12 12 N 1.47023 * 109.88211 * 238.98699 * 2 1 3 13 13 S 1.65590 * 125.65333 * 59.48388 * 12 2 1 14 14 O 1.42098 * 104.28420 * 147.38703 * 13 12 2 15 15 O 1.42102 * 104.27883 * 19.52482 * 13 12 2 16 16 C 1.81399 * 104.45080 * 263.45796 * 13 12 2 17 17 C 1.52999 * 109.47669 * 175.79582 * 16 13 12 18 18 C 1.50692 * 109.47668 * 180.02562 * 17 16 13 19 19 H 1.08004 * 119.99912 * 359.97438 * 18 17 16 20 20 C 1.37875 * 120.00558 * 180.02562 * 18 17 16 21 21 N 1.31520 * 119.99827 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 120.00292 * 179.97438 * 20 18 17 23 23 H 1.48495 * 109.47201 * 269.99886 * 22 20 18 24 24 H 1.48497 * 109.47325 * 30.00243 * 22 20 18 25 25 H 1.48503 * 109.46925 * 149.99713 * 22 20 18 26 26 H 1.09003 * 109.47063 * 181.01573 * 1 2 3 27 27 H 1.08994 * 109.46970 * 301.01278 * 1 2 3 28 28 H 1.08998 * 109.47617 * 61.01809 * 1 2 3 29 29 H 1.08005 * 120.00377 * 359.97438 * 4 3 2 30 30 H 1.08003 * 120.00060 * 180.23444 * 5 4 3 31 31 H 1.07998 * 120.00064 * 179.83855 * 6 5 4 32 32 H 1.08001 * 119.99824 * 179.97438 * 7 6 5 33 33 H 1.08006 * 120.00236 * 359.97438 * 8 3 2 34 34 H 1.08999 * 110.72039 * 215.59014 * 9 2 1 35 35 H 1.09000 * 110.71692 * 338.86308 * 9 2 1 36 36 H 1.08994 * 111.00655 * 153.57467 * 10 9 2 37 37 H 1.09000 * 111.00500 * 277.39473 * 10 9 2 38 38 H 1.09005 * 110.39107 * 204.36295 * 11 10 9 39 39 H 1.09003 * 110.23499 * 82.11395 * 11 10 9 40 40 H 1.09003 * 109.47278 * 55.79368 * 16 13 12 41 41 H 1.09001 * 109.47393 * 295.79977 * 16 13 12 42 42 H 1.09003 * 109.46945 * 59.99582 * 17 16 13 43 43 H 1.09001 * 109.47035 * 300.00614 * 17 16 13 44 44 H 0.96995 * 120.00126 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0422 1.4173 0.0000 4 6 1.3142 2.4153 0.6202 5 6 1.7859 3.7147 0.6235 6 6 2.9818 4.0175 -0.0004 7 6 3.7073 3.0203 -0.6251 8 6 3.2373 1.7203 -0.6251 9 6 2.0549 -0.7512 1.2416 10 6 2.3519 -2.1704 0.6894 11 6 2.8524 -1.8519 -0.7393 12 7 2.0300 -0.7124 -1.1850 13 16 1.7157 -0.3063 -2.7592 14 8 2.8938 -0.6810 -3.4598 15 8 1.3022 1.0517 -2.6950 16 6 0.3270 -1.3727 -3.2333 17 6 -0.1297 -1.0163 -4.6493 18 6 -1.2837 -1.9019 -5.0429 19 1 -1.6542 -2.6449 -4.3522 20 6 -1.8661 -1.7642 -6.2850 21 7 -1.4146 -0.8597 -7.1263 22 14 -3.2962 -2.8624 -6.7730 23 1 -2.7767 -4.0901 -7.4273 24 1 -4.0690 -3.2364 -5.5615 25 1 -4.1797 -2.1337 -7.7183 26 1 -0.3633 -1.0275 0.0182 27 1 -0.3633 0.5295 0.8807 28 1 -0.3634 0.4979 -0.8989 29 1 0.3780 2.1795 1.1044 30 1 1.2189 4.4938 1.1113 31 1 3.3490 5.0331 0.0000 32 1 4.6413 3.2569 -1.1129 33 1 3.8042 0.9412 -1.1131 34 1 2.9657 -0.2853 1.6177 35 1 1.2918 -0.7918 2.0189 36 1 3.1271 -2.6635 1.2758 37 1 1.4454 -2.7748 0.6571 38 1 2.6998 -2.7092 -1.3951 39 1 3.9060 -1.5734 -0.7164 40 1 -0.4987 -1.2249 -2.5372 41 1 0.6435 -2.4154 -3.2052 42 1 0.6961 -1.1642 -5.3454 43 1 -0.4462 0.0263 -4.6774 44 1 -1.8240 -0.7631 -8.0003 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000882689747.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:29:57 Heat of formation + Delta-G solvation = -69.288436 kcal Electronic energy + Delta-G solvation = -26477.874725 eV Core-core repulsion = 22907.102679 eV Total energy + Delta-G solvation = -3570.772046 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.14934 -38.81606 -38.19220 -37.01319 -35.94763 -33.58224 -33.19269 -32.11979 -31.56612 -30.14922 -27.65453 -26.81001 -24.18681 -23.47097 -23.24908 -22.47258 -21.37324 -19.72463 -19.09248 -18.36887 -17.60483 -17.32950 -16.95252 -16.56881 -16.40791 -15.84179 -15.60621 -15.26640 -14.88052 -14.83196 -14.51505 -14.32829 -14.14140 -14.04856 -13.77379 -13.41703 -13.38497 -13.13261 -13.09074 -12.96906 -12.85675 -12.79653 -12.58258 -12.43063 -12.30382 -12.13748 -12.04186 -11.81658 -11.72590 -11.59297 -11.43727 -11.18825 -10.67936 -10.06629 -9.76116 -9.48733 -8.28742 -6.43903 -0.77439 0.50202 0.54805 1.39193 1.41654 1.52861 1.72705 2.36183 2.81502 2.90887 3.04240 3.06635 3.59420 3.62304 3.85514 3.95277 3.98174 4.07873 4.12957 4.16921 4.26324 4.28943 4.52620 4.55666 4.61481 4.66544 4.71814 4.77619 4.92505 4.98032 5.03341 5.06227 5.16487 5.18085 5.20277 5.20521 5.25150 5.29197 5.40638 5.54696 5.62369 5.64373 5.65164 5.80508 6.01667 6.17765 6.69375 7.26714 8.83871 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.016905 B = 0.003988 C = 0.003729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1655.956928 B = 7019.150823 C = 7506.789024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.213 3.787 3 C -0.087 4.087 4 C -0.119 4.119 5 C -0.124 4.124 6 C -0.132 4.132 7 C -0.137 4.137 8 C -0.132 4.132 9 C -0.104 4.104 10 C -0.118 4.118 11 C 0.103 3.897 12 N -1.002 6.002 13 S 2.617 3.383 14 O -1.000 7.000 15 O -0.975 6.975 16 C -0.590 4.590 17 C 0.024 3.976 18 C -0.539 4.539 19 H 0.077 0.923 20 C -0.004 4.004 21 N -0.936 5.936 22 Si 0.976 3.024 23 H -0.269 1.269 24 H -0.255 1.255 25 H -0.282 1.282 26 H 0.086 0.914 27 H 0.103 0.897 28 H 0.040 0.960 29 H 0.147 0.853 30 H 0.148 0.852 31 H 0.142 0.858 32 H 0.126 0.874 33 H 0.099 0.901 34 H 0.077 0.923 35 H 0.110 0.890 36 H 0.107 0.893 37 H 0.090 0.910 38 H 0.079 0.921 39 H 0.067 0.933 40 H 0.141 0.859 41 H 0.137 0.863 42 H -0.001 1.001 43 H 0.005 0.995 44 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.482 0.812 23.333 24.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.126 3.874 3 C -0.088 4.088 4 C -0.138 4.138 5 C -0.142 4.142 6 C -0.150 4.150 7 C -0.155 4.155 8 C -0.151 4.151 9 C -0.143 4.143 10 C -0.156 4.156 11 C -0.021 4.021 12 N -0.840 5.840 13 S 2.717 3.283 14 O -0.991 6.991 15 O -0.965 6.965 16 C -0.722 4.722 17 C -0.015 4.015 18 C -0.578 4.578 19 H 0.095 0.905 20 C -0.202 4.202 21 N -0.575 5.575 22 Si 0.799 3.201 23 H -0.195 1.195 24 H -0.179 1.179 25 H -0.207 1.207 26 H 0.105 0.895 27 H 0.122 0.878 28 H 0.060 0.940 29 H 0.165 0.835 30 H 0.166 0.834 31 H 0.159 0.841 32 H 0.144 0.856 33 H 0.117 0.883 34 H 0.096 0.904 35 H 0.129 0.871 36 H 0.126 0.874 37 H 0.109 0.891 38 H 0.098 0.902 39 H 0.086 0.914 40 H 0.160 0.840 41 H 0.155 0.845 42 H 0.018 0.982 43 H 0.023 0.977 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 6.959 1.558 22.569 23.669 hybrid contribution -0.714 -0.528 -1.284 1.561 sum 6.245 1.031 21.285 22.206 Atomic orbital electron populations 1.22564 0.93178 1.04241 1.03807 1.19782 0.94065 0.87733 0.85840 1.20237 0.94637 0.96041 0.97918 1.21329 0.99955 0.92612 0.99868 1.21490 0.96275 0.96997 0.99444 1.21422 0.95756 0.99708 0.98144 1.21353 1.00894 0.93231 1.00033 1.21006 0.97050 0.96993 1.00022 1.22716 1.02570 0.94575 0.94447 1.22783 1.03244 0.96578 0.93018 1.22286 0.94753 0.87075 0.98013 1.58656 1.63664 1.41180 1.20494 1.04578 0.76029 0.75254 0.72459 1.93482 1.46984 1.85340 1.73267 1.93533 1.84423 1.33042 1.85519 1.30464 1.18299 1.15906 1.07509 1.18781 0.97048 0.97032 0.88599 1.21486 1.15946 1.19359 1.01028 0.90490 1.26163 1.00629 0.97062 0.96377 1.70115 1.43423 1.35481 1.08478 0.85277 0.77982 0.78181 0.78620 1.19474 1.17907 1.20719 0.89488 0.87794 0.94037 0.83499 0.83428 0.84060 0.85562 0.88278 0.90397 0.87120 0.87428 0.89116 0.90220 0.91436 0.84043 0.84467 0.98230 0.97651 0.92321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.83 7.62 71.98 0.55 -3.28 16 2 C 0.21 4.92 0.68 3.21 0.00 4.92 16 3 C -0.09 -2.37 3.49 -19.87 -0.07 -2.44 16 4 C -0.12 -2.82 9.15 22.27 0.20 -2.61 16 5 C -0.12 -2.76 10.05 22.27 0.22 -2.54 16 6 C -0.13 -3.16 10.05 22.27 0.22 -2.93 16 7 C -0.14 -3.84 10.05 22.27 0.22 -3.61 16 8 C -0.13 -4.08 8.08 22.27 0.18 -3.90 16 9 C -0.10 -1.51 6.01 31.78 0.19 -1.32 16 10 C -0.12 -1.51 7.07 31.91 0.23 -1.28 16 11 C 0.10 2.17 6.97 86.78 0.60 2.78 16 12 N -1.00 -28.10 2.01 -467.11 -0.94 -29.04 16 13 S 2.62 103.67 4.70 -56.49 -0.27 103.41 16 14 O -1.00 -45.65 17.71 -127.65 -2.26 -47.91 16 15 O -0.97 -43.75 14.69 -127.65 -1.88 -45.63 16 16 C -0.59 -23.92 6.12 71.98 0.44 -23.48 16 17 C 0.02 1.33 4.98 29.85 0.15 1.48 16 18 C -0.54 -30.53 9.11 25.60 0.23 -30.29 16 19 H 0.08 4.00 7.74 -2.91 -0.02 3.97 16 20 C 0.00 -0.23 5.46 84.65 0.46 0.24 16 21 N -0.94 -57.97 13.29 21.45 0.28 -57.68 16 22 Si 0.98 43.55 29.54 68.60 2.03 45.57 16 23 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 24 H -0.26 -10.59 7.11 99.48 0.71 -9.88 16 25 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 26 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 27 H 0.10 1.56 6.48 -2.39 -0.02 1.55 16 28 H 0.04 1.15 7.07 -2.39 -0.02 1.13 16 29 H 0.15 2.59 6.21 -2.91 -0.02 2.58 16 30 H 0.15 2.33 8.06 -2.91 -0.02 2.31 16 31 H 0.14 2.55 8.06 -2.91 -0.02 2.53 16 32 H 0.13 3.11 8.06 -2.91 -0.02 3.08 16 33 H 0.10 3.23 7.23 -2.91 -0.02 3.21 16 34 H 0.08 1.15 7.85 -2.39 -0.02 1.14 16 35 H 0.11 1.04 7.83 -2.39 -0.02 1.03 16 36 H 0.11 0.89 8.14 -2.39 -0.02 0.87 16 37 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 38 H 0.08 1.59 8.14 -2.38 -0.02 1.58 16 39 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 40 H 0.14 5.03 7.90 -2.39 -0.02 5.02 16 41 H 0.14 4.91 8.14 -2.39 -0.02 4.89 16 42 H 0.00 -0.04 8.14 -2.39 -0.02 -0.06 16 43 H 0.01 0.31 8.14 -2.39 -0.02 0.29 16 44 H 0.27 15.46 8.31 -92.71 -0.77 14.69 16 Total: -1.00 -80.07 364.07 1.78 -78.28 By element: Atomic # 1 Polarization: 20.32 SS G_CDS: 0.97 Total: 21.29 kcal Atomic # 6 Polarization: -72.13 SS G_CDS: 3.84 Total: -68.29 kcal Atomic # 7 Polarization: -86.07 SS G_CDS: -0.66 Total: -86.72 kcal Atomic # 8 Polarization: -89.40 SS G_CDS: -4.14 Total: -93.54 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.57 kcal Atomic # 16 Polarization: 103.67 SS G_CDS: -0.27 Total: 103.41 kcal Total: -80.07 1.78 -78.28 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882689747.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.994 kcal (2) G-P(sol) polarization free energy of solvation -80.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds