Wall clock time and date at job start Tue Mar 31 2020 14:30:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50702 * 109.99256 * 2 1 4 4 C 1.38245 * 119.99696 * 120.82538 * 3 2 1 5 5 C 1.38232 * 119.99663 * 179.80602 * 4 3 2 6 6 C 1.38233 * 120.00350 * 0.42290 * 5 4 3 7 7 C 1.38241 * 119.99874 * 359.80484 * 6 5 4 8 8 C 1.38229 * 120.00369 * 301.09371 * 3 2 1 9 9 C 1.54320 * 109.88148 * 238.90633 * 2 1 3 10 10 C 1.55159 * 102.94349 * 262.77255 * 9 2 1 11 11 C 1.55129 * 101.48377 * 324.33664 * 10 9 2 12 12 N 1.47018 * 109.88410 * 121.09648 * 2 1 3 13 13 S 1.65608 * 125.64670 * 300.44225 * 12 2 1 14 14 O 1.42105 * 104.27567 * 206.06978 * 13 12 2 15 15 O 1.42099 * 104.27801 * 333.92948 * 13 12 2 16 16 C 1.81397 * 104.44917 * 90.00019 * 13 12 2 17 17 C 1.53002 * 109.47293 * 179.97438 * 16 13 12 18 18 C 1.50702 * 109.47210 * 179.97438 * 17 16 13 19 19 H 1.07998 * 120.00272 * 0.02562 * 18 17 16 20 20 C 1.37882 * 119.99776 * 179.97438 * 18 17 16 21 21 N 1.31507 * 119.99704 * 180.02562 * 20 18 17 22 22 Si 1.86799 * 119.99953 * 0.02562 * 20 18 17 23 23 H 1.48503 * 109.47011 * 89.99885 * 22 20 18 24 24 H 1.48497 * 109.46958 * 209.99916 * 22 20 18 25 25 H 1.48502 * 109.47133 * 329.99995 * 22 20 18 26 26 H 1.08999 * 109.47230 * 298.90087 * 1 2 3 27 27 H 1.08997 * 109.47070 * 58.90709 * 1 2 3 28 28 H 1.09007 * 109.46803 * 178.90334 * 1 2 3 29 29 H 1.08003 * 119.99763 * 359.97438 * 4 3 2 30 30 H 1.08001 * 119.99767 * 180.20705 * 5 4 3 31 31 H 1.07997 * 120.00118 * 179.79072 * 6 5 4 32 32 H 1.07997 * 120.00187 * 179.97438 * 7 6 5 33 33 H 1.08000 * 120.00099 * 359.97438 * 8 3 2 34 34 H 1.08996 * 110.72172 * 21.13530 * 9 2 1 35 35 H 1.08998 * 110.72014 * 144.23412 * 9 2 1 36 36 H 1.08994 * 110.99871 * 82.57319 * 10 9 2 37 37 H 1.08996 * 111.00409 * 206.39189 * 10 9 2 38 38 H 1.09005 * 110.49746 * 278.45477 * 11 10 9 39 39 H 1.08997 * 110.34301 * 156.05884 * 11 10 9 40 40 H 1.09001 * 109.47492 * 299.99928 * 16 13 12 41 41 H 1.09001 * 109.47146 * 59.99771 * 16 13 12 42 42 H 1.09001 * 109.47069 * 300.00526 * 17 16 13 43 43 H 1.09001 * 109.46935 * 59.99981 * 17 16 13 44 44 H 0.97001 * 119.99825 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0453 1.4162 0.0000 4 6 2.8582 1.8560 1.0281 5 6 3.3340 3.1538 1.0261 6 6 2.9901 4.0145 0.0005 7 6 2.1734 3.5762 -1.0251 8 6 1.7007 2.2771 -1.0251 9 6 2.0549 -0.7495 -1.2427 10 6 2.3520 -2.1695 -0.6924 11 6 2.8614 -1.8465 0.7368 12 7 2.0301 -0.7141 1.1839 13 16 1.7172 -0.3091 2.7589 14 8 2.8270 -0.8255 3.4806 15 8 1.4562 1.0871 2.7165 16 6 0.2075 -1.2265 3.1707 17 6 -0.1888 -0.9327 4.6190 18 6 -1.4434 -1.6945 4.9610 19 1 -1.9111 -2.3254 4.2197 20 6 -1.9935 -1.5867 6.2207 21 7 -3.0880 -2.2518 6.5192 22 14 -1.1842 -0.4960 7.5032 23 1 -1.7454 0.8758 7.4116 24 1 -1.4438 -1.0477 8.8572 25 1 0.2801 -0.4491 7.2602 26 1 -0.3633 0.4967 0.8997 27 1 -0.3633 0.5307 -0.8800 28 1 -0.3633 -1.0276 -0.0197 29 1 3.1235 1.1847 1.8315 30 1 3.9718 3.4963 1.8275 31 1 3.3591 5.0295 0.0007 32 1 1.9043 4.2487 -1.8261 33 1 1.0625 1.9348 -1.8262 34 1 1.2918 -0.7890 -2.0200 35 1 2.9639 -0.2812 -1.6201 36 1 1.4453 -2.7735 -0.6605 37 1 3.1267 -2.6620 -1.2800 38 1 3.9124 -1.5587 0.7114 39 1 2.7179 -2.7048 1.3931 40 1 -0.5980 -0.9191 2.5038 41 1 0.3883 -2.2950 3.0535 42 1 0.6168 -1.2405 5.2857 43 1 -0.3695 0.1357 4.7367 44 1 -3.4753 -2.1757 7.4053 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000882689750.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:30:01 Heat of formation + Delta-G solvation = -30.136748 kcal Electronic energy + Delta-G solvation = -26625.388424 eV Core-core repulsion = 23056.314122 eV Total energy + Delta-G solvation = -3569.074301 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.28285 -37.93527 -36.79414 -35.70730 -33.99279 -32.60136 -31.57089 -31.39652 -30.42153 -29.34326 -26.10636 -25.78251 -23.13011 -22.61562 -21.74931 -21.07100 -20.33079 -18.53703 -18.02038 -16.92798 -16.51576 -16.31234 -15.54790 -15.38281 -14.88751 -14.59132 -14.38215 -13.90762 -13.80649 -13.69971 -13.43443 -13.28143 -13.21834 -12.82013 -12.63432 -12.39048 -12.14571 -11.90637 -11.86760 -11.68832 -11.55681 -11.44207 -11.29068 -11.25708 -11.15009 -10.85365 -10.68914 -10.60702 -10.45262 -10.16592 -9.76776 -9.45224 -8.95757 -8.72415 -8.67832 -8.49178 -6.18191 -4.19418 0.56903 1.44265 1.57328 2.86896 3.25195 3.32478 3.36694 3.87954 4.10049 4.19489 4.34324 4.35306 4.54159 4.77427 4.85073 4.95851 5.01718 5.09711 5.13369 5.17417 5.28697 5.34543 5.41472 5.50844 5.51436 5.58341 5.62256 5.67560 5.69238 5.72995 5.83673 5.99463 6.01712 6.09274 6.12023 6.21094 6.27988 6.38394 6.55004 6.63656 6.78259 6.79373 6.91500 7.09447 7.52806 8.34998 8.82771 9.41538 10.94206 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.016170 B = 0.004400 C = 0.003987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1731.202239 B = 6362.310339 C = 7020.800723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.222 3.778 3 C -0.095 4.095 4 C -0.054 4.054 5 C -0.125 4.125 6 C -0.120 4.120 7 C -0.132 4.132 8 C -0.108 4.108 9 C -0.114 4.114 10 C -0.130 4.130 11 C 0.122 3.878 12 N -1.009 6.009 13 S 2.591 3.409 14 O -0.963 6.963 15 O -0.948 6.948 16 C -0.583 4.583 17 C -0.006 4.006 18 C -0.519 4.519 19 H 0.078 0.922 20 C 0.073 3.927 21 N -0.895 5.895 22 Si 0.868 3.132 23 H -0.271 1.271 24 H -0.281 1.281 25 H -0.262 1.262 26 H 0.067 0.933 27 H 0.075 0.925 28 H 0.072 0.928 29 H 0.104 0.896 30 H 0.118 0.882 31 H 0.117 0.883 32 H 0.118 0.882 33 H 0.120 0.880 34 H 0.082 0.918 35 H 0.078 0.922 36 H 0.079 0.921 37 H 0.081 0.919 38 H 0.068 0.932 39 H 0.077 0.923 40 H 0.126 0.874 41 H 0.124 0.876 42 H 0.031 0.969 43 H 0.028 0.972 44 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.917 5.238 -19.091 23.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.134 3.866 3 C -0.097 4.097 4 C -0.072 4.072 5 C -0.143 4.143 6 C -0.138 4.138 7 C -0.150 4.150 8 C -0.126 4.126 9 C -0.153 4.153 10 C -0.169 4.169 11 C -0.004 4.004 12 N -0.844 5.844 13 S 2.692 3.308 14 O -0.953 6.953 15 O -0.938 6.938 16 C -0.717 4.717 17 C -0.045 4.045 18 C -0.558 4.558 19 H 0.096 0.904 20 C -0.130 4.130 21 N -0.533 5.533 22 Si 0.694 3.306 23 H -0.196 1.196 24 H -0.207 1.207 25 H -0.187 1.187 26 H 0.086 0.914 27 H 0.094 0.906 28 H 0.091 0.909 29 H 0.121 0.879 30 H 0.136 0.864 31 H 0.135 0.865 32 H 0.136 0.864 33 H 0.138 0.862 34 H 0.101 0.899 35 H 0.096 0.904 36 H 0.097 0.903 37 H 0.100 0.900 38 H 0.087 0.913 39 H 0.095 0.905 40 H 0.145 0.855 41 H 0.142 0.858 42 H 0.049 0.951 43 H 0.046 0.954 44 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 12.334 5.795 -18.319 22.832 hybrid contribution -0.327 0.131 0.790 0.865 sum 12.007 5.926 -17.529 22.058 Atomic orbital electron populations 1.22443 0.93384 1.03187 1.03908 1.19445 0.93552 0.88072 0.85509 1.19959 0.98765 0.95191 0.95743 1.20922 0.95046 0.96053 0.95205 1.21071 1.00757 0.93959 0.98530 1.21082 0.98682 0.99262 0.94774 1.20990 0.99126 0.95888 0.99030 1.20780 1.00135 0.93577 0.98133 1.22715 1.01849 0.95048 0.95651 1.22838 1.01991 0.96697 0.95397 1.21991 0.94642 0.88075 0.95642 1.58922 1.63215 1.40533 1.21716 1.05716 0.77682 0.75813 0.71598 1.93561 1.49862 1.81726 1.70170 1.93673 1.86803 1.28756 1.84601 1.30398 1.18078 1.13799 1.09383 1.19408 0.99521 0.98173 0.87429 1.20831 1.07578 1.28297 0.99080 0.90394 1.24972 0.94598 0.95256 0.98182 1.69875 1.20121 1.41692 1.21594 0.86947 0.80924 0.81398 0.81338 1.19613 1.20659 1.18673 0.91392 0.90578 0.90925 0.87855 0.86393 0.86511 0.86386 0.86230 0.89895 0.90374 0.90258 0.90021 0.91324 0.90461 0.85529 0.85751 0.95106 0.95407 0.92353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.96 7.80 37.16 0.29 -1.67 16 2 C 0.22 2.64 0.70 -131.99 -0.09 2.55 16 3 C -0.10 -1.28 4.26 -104.62 -0.45 -1.73 16 4 C -0.05 -0.84 6.89 -39.58 -0.27 -1.11 16 5 C -0.12 -1.76 10.05 -39.59 -0.40 -2.16 16 6 C -0.12 -1.44 10.05 -39.58 -0.40 -1.83 16 7 C -0.13 -1.47 10.05 -39.58 -0.40 -1.87 16 8 C -0.11 -1.24 8.91 -39.59 -0.35 -1.59 16 9 C -0.11 -0.97 5.73 -24.90 -0.14 -1.12 16 10 C -0.13 -1.04 7.10 -24.46 -0.17 -1.21 16 11 C 0.12 1.33 6.90 -2.41 -0.02 1.31 16 12 N -1.01 -13.75 2.41 -98.75 -0.24 -13.99 16 13 S 2.59 46.15 3.85 -107.50 -0.41 45.73 16 14 O -0.96 -19.49 17.60 -57.54 -1.01 -20.51 16 15 O -0.95 -18.51 13.13 -57.54 -0.76 -19.26 16 16 C -0.58 -11.04 6.12 37.16 0.23 -10.82 16 17 C -0.01 -0.14 4.05 -27.88 -0.11 -0.26 16 18 C -0.52 -14.58 9.66 -34.44 -0.33 -14.91 16 19 H 0.08 2.29 7.99 -52.49 -0.42 1.87 16 20 C 0.07 2.10 5.47 -17.82 -0.10 2.01 16 21 N -0.89 -27.08 13.96 55.43 0.77 -26.31 16 22 Si 0.87 21.64 27.47 -169.99 -4.67 16.97 16 23 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 24 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 25 H -0.26 -6.36 6.54 56.52 0.37 -5.99 16 26 H 0.07 0.92 6.77 -51.93 -0.35 0.57 16 27 H 0.08 0.70 7.34 -51.93 -0.38 0.32 16 28 H 0.07 0.74 8.14 -51.92 -0.42 0.32 16 29 H 0.10 1.76 4.56 -41.48 -0.19 1.57 16 30 H 0.12 1.49 8.06 -52.49 -0.42 1.07 16 31 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 32 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 33 H 0.12 1.05 7.54 -52.49 -0.40 0.66 16 34 H 0.08 0.56 7.83 -51.93 -0.41 0.15 16 35 H 0.08 0.66 7.84 -51.93 -0.41 0.25 16 36 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 37 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.13 2.20 6.85 -51.92 -0.36 1.84 16 41 H 0.12 2.15 8.14 -51.92 -0.42 1.72 16 42 H 0.03 0.75 7.20 -51.93 -0.37 0.37 16 43 H 0.03 0.66 7.57 -51.93 -0.39 0.27 16 44 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 355.71 15.07 5.36 5.36 Total: -1.00 -34.33 355.71 -10.32 -44.65 By element: Atomic # 1 Polarization: 8.40 SS G_CDS: -6.64 Total: 1.75 kcal Atomic # 6 Polarization: -31.68 SS G_CDS: -2.71 Total: -34.40 kcal Atomic # 7 Polarization: -40.83 SS G_CDS: 0.54 Total: -40.30 kcal Atomic # 8 Polarization: -38.00 SS G_CDS: -1.77 Total: -39.77 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -4.67 Total: 16.97 kcal Atomic # 16 Polarization: 46.15 SS G_CDS: -0.41 Total: 45.73 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -34.33 -10.32 -44.65 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882689750.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.511 kcal (2) G-P(sol) polarization free energy of solvation -34.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds