Wall clock time and date at job start Tue Mar 31 2020 14:30:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50702 * 109.99256 * 2 1 4 4 C 1.38245 * 119.99696 * 120.82538 * 3 2 1 5 5 C 1.38232 * 119.99663 * 179.80602 * 4 3 2 6 6 C 1.38233 * 120.00350 * 0.42290 * 5 4 3 7 7 C 1.38241 * 119.99874 * 359.80484 * 6 5 4 8 8 C 1.38229 * 120.00369 * 301.09371 * 3 2 1 9 9 C 1.54320 * 109.88148 * 238.90633 * 2 1 3 10 10 C 1.55159 * 102.94349 * 262.77255 * 9 2 1 11 11 C 1.55129 * 101.48377 * 324.33664 * 10 9 2 12 12 N 1.47018 * 109.88410 * 121.09648 * 2 1 3 13 13 S 1.65608 * 125.64670 * 300.44225 * 12 2 1 14 14 O 1.42105 * 104.27567 * 206.06978 * 13 12 2 15 15 O 1.42099 * 104.27801 * 333.92948 * 13 12 2 16 16 C 1.81397 * 104.44917 * 90.00019 * 13 12 2 17 17 C 1.53002 * 109.47293 * 179.97438 * 16 13 12 18 18 C 1.50702 * 109.47210 * 179.97438 * 17 16 13 19 19 H 1.07998 * 120.00272 * 0.02562 * 18 17 16 20 20 C 1.37882 * 119.99776 * 179.97438 * 18 17 16 21 21 N 1.31507 * 119.99704 * 180.02562 * 20 18 17 22 22 Si 1.86799 * 119.99953 * 0.02562 * 20 18 17 23 23 H 1.48503 * 109.47011 * 89.99885 * 22 20 18 24 24 H 1.48497 * 109.46958 * 209.99916 * 22 20 18 25 25 H 1.48502 * 109.47133 * 329.99995 * 22 20 18 26 26 H 1.08999 * 109.47230 * 298.90087 * 1 2 3 27 27 H 1.08997 * 109.47070 * 58.90709 * 1 2 3 28 28 H 1.09007 * 109.46803 * 178.90334 * 1 2 3 29 29 H 1.08003 * 119.99763 * 359.97438 * 4 3 2 30 30 H 1.08001 * 119.99767 * 180.20705 * 5 4 3 31 31 H 1.07997 * 120.00118 * 179.79072 * 6 5 4 32 32 H 1.07997 * 120.00187 * 179.97438 * 7 6 5 33 33 H 1.08000 * 120.00099 * 359.97438 * 8 3 2 34 34 H 1.08996 * 110.72172 * 21.13530 * 9 2 1 35 35 H 1.08998 * 110.72014 * 144.23412 * 9 2 1 36 36 H 1.08994 * 110.99871 * 82.57319 * 10 9 2 37 37 H 1.08996 * 111.00409 * 206.39189 * 10 9 2 38 38 H 1.09005 * 110.49746 * 278.45477 * 11 10 9 39 39 H 1.08997 * 110.34301 * 156.05884 * 11 10 9 40 40 H 1.09001 * 109.47492 * 299.99928 * 16 13 12 41 41 H 1.09001 * 109.47146 * 59.99771 * 16 13 12 42 42 H 1.09001 * 109.47069 * 300.00526 * 17 16 13 43 43 H 1.09001 * 109.46935 * 59.99981 * 17 16 13 44 44 H 0.97001 * 119.99825 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0453 1.4162 0.0000 4 6 2.8582 1.8560 1.0281 5 6 3.3340 3.1538 1.0261 6 6 2.9901 4.0145 0.0005 7 6 2.1734 3.5762 -1.0251 8 6 1.7007 2.2771 -1.0251 9 6 2.0549 -0.7495 -1.2427 10 6 2.3520 -2.1695 -0.6924 11 6 2.8614 -1.8465 0.7368 12 7 2.0301 -0.7141 1.1839 13 16 1.7172 -0.3091 2.7589 14 8 2.8270 -0.8255 3.4806 15 8 1.4562 1.0871 2.7165 16 6 0.2075 -1.2265 3.1707 17 6 -0.1888 -0.9327 4.6190 18 6 -1.4434 -1.6945 4.9610 19 1 -1.9111 -2.3254 4.2197 20 6 -1.9935 -1.5867 6.2207 21 7 -3.0880 -2.2518 6.5192 22 14 -1.1842 -0.4960 7.5032 23 1 -1.7454 0.8758 7.4116 24 1 -1.4438 -1.0477 8.8572 25 1 0.2801 -0.4491 7.2602 26 1 -0.3633 0.4967 0.8997 27 1 -0.3633 0.5307 -0.8800 28 1 -0.3633 -1.0276 -0.0197 29 1 3.1235 1.1847 1.8315 30 1 3.9718 3.4963 1.8275 31 1 3.3591 5.0295 0.0007 32 1 1.9043 4.2487 -1.8261 33 1 1.0625 1.9348 -1.8262 34 1 1.2918 -0.7890 -2.0200 35 1 2.9639 -0.2812 -1.6201 36 1 1.4453 -2.7735 -0.6605 37 1 3.1267 -2.6620 -1.2800 38 1 3.9124 -1.5587 0.7114 39 1 2.7179 -2.7048 1.3931 40 1 -0.5980 -0.9191 2.5038 41 1 0.3883 -2.2950 3.0535 42 1 0.6168 -1.2405 5.2857 43 1 -0.3695 0.1357 4.7367 44 1 -3.4753 -2.1757 7.4053 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000882689750.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:30:00 Heat of formation + Delta-G solvation = -52.151888 kcal Electronic energy + Delta-G solvation = -26626.343072 eV Core-core repulsion = 23056.314122 eV Total energy + Delta-G solvation = -3570.028949 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.18864 -38.83962 -38.25512 -37.18991 -35.97491 -33.59621 -33.45643 -32.32038 -31.35066 -30.25613 -27.94579 -26.69570 -24.12706 -23.56201 -23.18866 -22.23986 -21.39014 -19.82394 -19.45795 -18.69743 -17.66325 -17.43955 -16.79566 -16.47965 -16.41696 -15.99114 -15.49464 -15.38985 -14.95141 -14.77617 -14.72498 -14.32626 -14.25794 -14.15233 -13.85709 -13.53006 -13.36577 -13.19345 -13.16536 -13.10268 -12.95847 -12.83806 -12.52783 -12.48444 -12.29403 -12.04116 -11.93555 -11.78500 -11.70144 -11.57550 -11.43590 -11.29742 -10.88795 -10.06971 -9.67437 -9.45063 -8.40882 -6.46627 -0.84283 0.51507 0.60939 1.27124 1.29043 1.39010 1.63193 2.25036 2.69552 2.92419 2.93328 3.03561 3.49269 3.62212 3.83170 3.87508 4.00736 4.03736 4.09317 4.19260 4.27752 4.30697 4.46880 4.51318 4.56707 4.63895 4.69087 4.76777 4.92053 4.96366 4.98344 4.98825 5.03945 5.08644 5.15578 5.20193 5.24489 5.27014 5.40124 5.41807 5.50745 5.64308 5.68922 5.83313 6.12371 6.19076 6.58524 7.17725 8.74659 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.016170 B = 0.004400 C = 0.003987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1731.202239 B = 6362.310339 C = 7020.800723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.213 3.787 3 C -0.105 4.105 4 C -0.090 4.090 5 C -0.149 4.149 6 C -0.126 4.126 7 C -0.130 4.130 8 C -0.108 4.108 9 C -0.105 4.105 10 C -0.119 4.119 11 C 0.106 3.894 12 N -1.004 6.004 13 S 2.615 3.385 14 O -0.993 6.993 15 O -0.968 6.968 16 C -0.589 4.589 17 C -0.013 4.013 18 C -0.527 4.527 19 H 0.051 0.949 20 C 0.018 3.982 21 N -0.936 5.936 22 Si 0.921 3.079 23 H -0.260 1.260 24 H -0.269 1.269 25 H -0.254 1.254 26 H 0.038 0.962 27 H 0.102 0.898 28 H 0.084 0.916 29 H 0.079 0.921 30 H 0.116 0.884 31 H 0.140 0.860 32 H 0.151 0.849 33 H 0.153 0.847 34 H 0.111 0.889 35 H 0.081 0.919 36 H 0.088 0.912 37 H 0.107 0.893 38 H 0.069 0.931 39 H 0.078 0.922 40 H 0.139 0.861 41 H 0.137 0.863 42 H 0.027 0.973 43 H 0.028 0.972 44 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.476 6.012 -21.964 25.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.126 3.874 3 C -0.107 4.107 4 C -0.109 4.109 5 C -0.168 4.168 6 C -0.144 4.144 7 C -0.148 4.148 8 C -0.126 4.126 9 C -0.144 4.144 10 C -0.158 4.158 11 C -0.019 4.019 12 N -0.841 5.841 13 S 2.715 3.285 14 O -0.983 6.983 15 O -0.958 6.958 16 C -0.721 4.721 17 C -0.053 4.053 18 C -0.566 4.566 19 H 0.070 0.930 20 C -0.181 4.181 21 N -0.576 5.576 22 Si 0.743 3.257 23 H -0.185 1.185 24 H -0.194 1.194 25 H -0.178 1.178 26 H 0.057 0.943 27 H 0.121 0.879 28 H 0.103 0.897 29 H 0.096 0.904 30 H 0.134 0.866 31 H 0.158 0.842 32 H 0.169 0.831 33 H 0.170 0.830 34 H 0.130 0.870 35 H 0.100 0.900 36 H 0.107 0.893 37 H 0.125 0.875 38 H 0.087 0.913 39 H 0.096 0.904 40 H 0.157 0.843 41 H 0.155 0.845 42 H 0.045 0.955 43 H 0.046 0.954 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 12.885 6.562 -21.180 25.645 hybrid contribution -0.488 -0.110 1.553 1.632 sum 12.397 6.452 -19.627 24.094 Atomic orbital electron populations 1.22532 0.93044 1.04071 1.03763 1.19807 0.93873 0.87727 0.85962 1.20214 0.98374 0.96389 0.95713 1.20956 0.97415 0.96568 0.95991 1.21262 1.01604 0.94196 0.99707 1.21395 0.98656 1.00005 0.94294 1.21447 0.97797 0.96329 0.99212 1.21173 0.99890 0.93404 0.98140 1.22748 1.02761 0.94472 0.94423 1.22859 1.03091 0.96753 0.93110 1.22338 0.94493 0.87145 0.97877 1.58570 1.63254 1.41660 1.20663 1.04693 0.76447 0.74891 0.72489 1.93511 1.50597 1.82131 1.72097 1.93652 1.86861 1.29834 1.85423 1.30414 1.19974 1.15236 1.06440 1.19338 0.97630 0.97494 0.90791 1.21120 1.08845 1.28011 0.98638 0.93044 1.25810 0.95163 0.96684 1.00436 1.69989 1.21663 1.43435 1.22482 0.86092 0.80414 0.80033 0.79137 1.18452 1.19406 1.17826 0.94268 0.87901 0.89680 0.90350 0.86555 0.84198 0.83124 0.82975 0.87021 0.90000 0.89345 0.87454 0.91315 0.90387 0.84323 0.84522 0.95468 0.95378 0.91981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.63 7.80 71.98 0.56 -3.06 16 2 C 0.21 4.64 0.70 3.21 0.00 4.65 16 3 C -0.11 -2.68 4.26 -19.86 -0.08 -2.77 16 4 C -0.09 -2.86 6.89 22.27 0.15 -2.71 16 5 C -0.15 -4.25 10.05 22.27 0.22 -4.03 16 6 C -0.13 -2.80 10.05 22.27 0.22 -2.58 16 7 C -0.13 -2.48 10.05 22.27 0.22 -2.25 16 8 C -0.11 -2.13 8.91 22.27 0.20 -1.94 16 9 C -0.11 -1.40 5.73 31.78 0.18 -1.21 16 10 C -0.12 -1.49 7.10 32.06 0.23 -1.26 16 11 C 0.11 2.17 6.90 86.93 0.60 2.77 16 12 N -1.00 -26.69 2.41 -466.34 -1.13 -27.82 16 13 S 2.62 94.89 3.85 -56.49 -0.22 94.68 16 14 O -0.99 -41.35 17.60 -127.65 -2.25 -43.60 16 15 O -0.97 -38.88 13.13 -127.65 -1.68 -40.56 16 16 C -0.59 -22.63 6.12 71.98 0.44 -22.19 16 17 C -0.01 -0.66 4.05 29.85 0.12 -0.54 16 18 C -0.53 -30.38 9.66 25.60 0.25 -30.13 16 19 H 0.05 3.14 7.99 -2.91 -0.02 3.12 16 20 C 0.02 1.06 5.47 84.66 0.46 1.53 16 21 N -0.94 -57.84 13.96 21.45 0.30 -57.54 16 22 Si 0.92 44.69 27.47 68.60 1.88 46.58 16 23 H -0.26 -12.10 7.11 99.48 0.71 -11.39 16 24 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 25 H -0.25 -11.92 6.54 99.48 0.65 -11.27 16 26 H 0.04 1.03 6.77 -2.39 -0.02 1.02 16 27 H 0.10 1.52 7.34 -2.39 -0.02 1.50 16 28 H 0.08 1.51 8.14 -2.38 -0.02 1.49 16 29 H 0.08 2.79 4.56 -9.91 -0.05 2.75 16 30 H 0.12 3.11 8.06 -2.91 -0.02 3.09 16 31 H 0.14 2.34 8.06 -2.91 -0.02 2.32 16 32 H 0.15 1.86 8.06 -2.91 -0.02 1.83 16 33 H 0.15 1.93 7.54 -2.91 -0.02 1.91 16 34 H 0.11 0.90 7.83 -2.39 -0.02 0.88 16 35 H 0.08 1.07 7.84 -2.39 -0.02 1.05 16 36 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 37 H 0.11 0.85 8.14 -2.39 -0.02 0.83 16 38 H 0.07 1.40 8.14 -2.38 -0.02 1.38 16 39 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 40 H 0.14 4.89 6.85 -2.39 -0.02 4.87 16 41 H 0.14 4.78 8.14 -2.39 -0.02 4.76 16 42 H 0.03 1.34 7.20 -2.39 -0.02 1.32 16 43 H 0.03 1.36 7.57 -2.39 -0.02 1.34 16 44 H 0.27 15.56 8.31 -92.71 -0.77 14.79 16 Total: -1.00 -77.29 355.71 1.59 -75.69 By element: Atomic # 1 Polarization: 17.42 SS G_CDS: 0.89 Total: 18.32 kcal Atomic # 6 Polarization: -69.53 SS G_CDS: 3.78 Total: -65.74 kcal Atomic # 7 Polarization: -84.53 SS G_CDS: -0.83 Total: -85.36 kcal Atomic # 8 Polarization: -80.24 SS G_CDS: -3.92 Total: -84.16 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 1.88 Total: 46.58 kcal Atomic # 16 Polarization: 94.89 SS G_CDS: -0.22 Total: 94.68 kcal Total: -77.29 1.59 -75.69 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882689750.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.541 kcal (2) G-P(sol) polarization free energy of solvation -77.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds