Wall clock time and date at job start Tue Mar 31 2020 14:42:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.31782 * 122.74962 * 2 1 4 4 C 1.29025 * 117.12377 * 180.33297 * 3 2 1 5 5 C 1.50698 * 124.91981 * 179.67790 * 4 3 2 6 6 C 1.53788 * 113.61151 * 39.18086 * 5 4 3 7 7 C 1.53956 * 87.01735 * 220.04913 * 6 5 4 8 8 C 1.53782 * 87.11387 * 25.36417 * 7 6 5 9 9 S 1.70976 * 110.16761 * 359.71708 * 4 3 2 10 10 C 1.33638 * 122.74964 * 179.79951 * 2 1 3 11 11 C 1.50697 * 126.04017 * 359.97438 * 10 2 1 12 12 C 1.50700 * 109.47266 * 89.71367 * 11 10 2 13 13 O 1.20822 * 119.99958 * 0.02562 * 12 11 10 14 14 O 1.34234 * 120.00068 * 180.02562 * 12 11 10 15 15 C 1.45196 * 116.99938 * 179.97438 * 14 12 11 16 16 C 1.52998 * 109.47070 * 179.97438 * 15 14 12 17 17 C 1.52998 * 109.47242 * 180.02562 * 16 15 14 18 18 C 1.50704 * 109.47188 * 180.02562 * 17 16 15 19 19 H 1.07996 * 120.00305 * 359.97438 * 18 17 16 20 20 C 1.37879 * 119.99992 * 179.97438 * 18 17 16 21 21 N 1.31511 * 120.00322 * 179.97438 * 20 18 17 22 22 Si 1.86799 * 119.99999 * 0.02562 * 20 18 17 23 23 H 1.48506 * 109.47393 * 89.99584 * 22 20 18 24 24 H 1.48501 * 109.47179 * 209.99838 * 22 20 18 25 25 H 1.48504 * 109.47429 * 329.99989 * 22 20 18 26 26 H 1.09005 * 109.47033 * 270.19754 * 1 2 3 27 27 H 1.08990 * 109.47351 * 30.20099 * 1 2 3 28 28 H 1.09004 * 109.47128 * 150.20128 * 1 2 3 29 29 H 1.09001 * 112.85588 * 170.37337 * 5 4 3 30 30 H 1.09007 * 113.61107 * 334.56949 * 6 5 4 31 31 H 1.08999 * 113.61440 * 105.47044 * 6 5 4 32 32 H 1.08996 * 113.53905 * 270.80875 * 7 6 5 33 33 H 1.09008 * 113.74079 * 139.94161 * 7 6 5 34 34 H 1.08998 * 113.60885 * 220.09272 * 8 7 6 35 35 H 1.08992 * 113.61338 * 89.18486 * 8 7 6 36 36 H 1.09004 * 109.47205 * 329.71461 * 11 10 2 37 37 H 1.08997 * 109.47395 * 209.71953 * 11 10 2 38 38 H 1.08996 * 109.47465 * 299.99911 * 15 14 12 39 39 H 1.08999 * 109.47008 * 59.99921 * 15 14 12 40 40 H 1.08998 * 109.47592 * 300.00297 * 16 15 14 41 41 H 1.08999 * 109.47084 * 60.00195 * 16 15 14 42 42 H 1.09004 * 109.47100 * 299.99832 * 17 16 15 43 43 H 1.08999 * 109.47046 * 60.00020 * 17 16 15 44 44 H 0.96998 * 120.00464 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2199 1.1083 0.0000 4 6 3.5039 0.9819 -0.0067 5 6 4.4835 2.1270 -0.0148 6 6 4.0587 3.3073 0.8749 7 6 4.5788 4.2314 -0.2413 8 6 4.3167 3.0718 -1.2167 9 16 3.9332 -0.6731 -0.0061 10 6 2.2299 -1.1239 0.0039 11 6 1.6847 -2.5288 0.0094 12 6 1.4958 -2.9999 -1.4096 13 8 1.7757 -2.2699 -2.3308 14 8 1.0166 -4.2305 -1.6501 15 6 0.8602 -4.6168 -3.0409 16 6 0.3071 -6.0414 -3.1154 17 6 0.1428 -6.4487 -4.5810 18 6 -0.4026 -7.8517 -4.6544 19 1 -0.6108 -8.3983 -3.7466 20 6 -0.6358 -8.4374 -5.8806 21 7 -1.1112 -9.6619 -5.9447 22 14 -0.2750 -7.4922 -7.4509 23 1 1.1255 -7.7492 -7.8728 24 1 -1.2038 -7.9370 -8.5209 25 1 -0.4599 -6.0390 -7.2076 26 1 -0.3633 0.0035 1.0277 27 1 -0.3633 0.8881 -0.5169 28 1 -0.3633 -0.8918 -0.5107 29 1 5.5121 1.8054 0.1484 30 1 2.9815 3.3723 1.0291 31 1 4.6254 3.3805 1.8031 32 1 5.6336 4.4863 -0.1392 33 1 3.9481 5.1026 -0.4192 34 1 5.0914 2.9552 -1.9745 35 1 3.3103 3.0723 -1.6353 36 1 0.7261 -2.5446 0.5281 37 1 2.3854 -3.1886 0.5210 38 1 0.1691 -3.9322 -3.5326 39 1 1.8282 -4.5767 -3.5402 40 1 0.9984 -6.7258 -2.6238 41 1 -0.6609 -6.0819 -2.6160 42 1 -0.5485 -5.7644 -5.0730 43 1 1.1110 -6.4083 -5.0801 44 1 -1.2749 -10.0741 -6.8073 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000884811640.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:42:36 Heat of formation + Delta-G solvation = -63.682726 kcal Electronic energy + Delta-G solvation = -23770.221615 eV Core-core repulsion = 20199.692651 eV Total energy + Delta-G solvation = -3570.528964 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.72988 -41.08067 -39.26821 -37.89577 -35.94722 -34.41372 -33.84161 -31.38159 -29.47708 -28.49589 -26.87539 -26.55007 -24.83217 -23.70256 -22.34162 -22.05249 -20.88244 -19.27181 -19.11009 -19.00555 -18.72845 -17.77234 -17.33413 -16.91516 -16.32135 -16.10857 -15.87413 -15.78083 -14.99991 -14.83102 -14.45682 -14.33772 -14.18194 -13.86968 -13.81757 -13.70732 -13.44315 -13.39173 -13.08110 -12.86283 -12.83939 -12.60630 -12.15443 -12.14070 -12.03441 -11.83942 -11.78413 -11.56179 -11.48048 -11.41752 -11.37345 -11.34629 -10.78887 -10.54240 -10.27985 -9.59309 -8.31444 -6.36338 -0.41843 0.31115 0.70121 1.10175 1.35297 1.36855 1.48290 1.50790 1.87724 2.34096 2.99605 3.03579 3.45531 3.68035 3.70834 3.74253 3.80541 3.92797 3.94827 3.99110 4.01403 4.21130 4.36136 4.40663 4.42960 4.64814 4.69158 4.71522 4.72668 4.76448 4.79862 4.87440 4.94518 4.94901 5.02559 5.09161 5.18900 5.27475 5.32175 5.47124 5.49813 5.55330 5.61111 6.24459 6.64428 6.71736 6.72736 7.28123 8.84943 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.025355 B = 0.002052 C = 0.001991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.052383 B =13642.778336 C =14061.256926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.073 3.927 3 N -0.491 5.491 4 C 0.063 3.937 5 C -0.050 4.050 6 C -0.117 4.117 7 C -0.130 4.130 8 C -0.126 4.126 9 S 0.136 5.864 10 C -0.239 4.239 11 C -0.027 4.027 12 C 0.458 3.542 13 O -0.534 6.534 14 O -0.355 6.355 15 C 0.076 3.924 16 C -0.092 4.092 17 C -0.010 4.010 18 C -0.534 4.534 19 H 0.037 0.963 20 C 0.006 3.994 21 N -0.948 5.948 22 Si 0.948 3.052 23 H -0.266 1.266 24 H -0.283 1.283 25 H -0.248 1.248 26 H 0.099 0.901 27 H 0.072 0.928 28 H 0.073 0.927 29 H 0.130 0.870 30 H 0.076 0.924 31 H 0.085 0.915 32 H 0.102 0.898 33 H 0.074 0.926 34 H 0.080 0.920 35 H 0.067 0.933 36 H 0.155 0.845 37 H 0.143 0.857 38 H 0.069 0.931 39 H 0.068 0.932 40 H 0.064 0.936 41 H 0.065 0.935 42 H 0.024 0.976 43 H 0.023 0.977 44 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.624 28.326 17.484 35.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.059 4.059 3 N -0.206 5.206 4 C -0.215 4.215 5 C -0.072 4.072 6 C -0.156 4.156 7 C -0.167 4.167 8 C -0.166 4.166 9 S 0.396 5.604 10 C -0.360 4.360 11 C -0.067 4.067 12 C 0.301 3.699 13 O -0.424 6.424 14 O -0.272 6.272 15 C 0.002 3.998 16 C -0.130 4.130 17 C -0.047 4.047 18 C -0.572 4.572 19 H 0.055 0.945 20 C -0.192 4.192 21 N -0.588 5.588 22 Si 0.772 3.228 23 H -0.191 1.191 24 H -0.208 1.208 25 H -0.171 1.171 26 H 0.117 0.883 27 H 0.091 0.909 28 H 0.091 0.909 29 H 0.148 0.852 30 H 0.094 0.906 31 H 0.104 0.896 32 H 0.120 0.880 33 H 0.092 0.908 34 H 0.099 0.901 35 H 0.086 0.914 36 H 0.172 0.828 37 H 0.161 0.839 38 H 0.087 0.913 39 H 0.086 0.914 40 H 0.083 0.917 41 H 0.084 0.916 42 H 0.043 0.957 43 H 0.041 0.959 44 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 13.401 28.328 17.071 35.686 hybrid contribution -1.076 -0.405 -1.191 1.655 sum 12.325 27.923 15.880 34.406 Atomic orbital electron populations 1.20447 0.85985 1.03369 1.04128 1.20492 0.99097 0.86177 1.00182 1.66045 1.05124 1.31766 1.17642 1.27278 0.94340 0.98226 1.01611 1.21640 0.96147 0.88859 1.00539 1.22914 1.01736 0.93220 0.97772 1.22836 1.02627 0.96459 0.94782 1.22925 1.02125 0.95491 0.96017 1.83798 1.06214 1.02856 1.67556 1.25104 0.95870 0.99248 1.15759 1.19760 1.06855 0.90360 0.89686 1.24196 0.72971 0.79250 0.93466 1.90675 1.47875 1.56051 1.47778 1.86484 1.75814 1.33048 1.31823 1.23164 1.01474 0.96874 0.78272 1.21320 1.01196 0.92442 0.98025 1.19454 0.96707 0.94933 0.93654 1.21398 1.43013 0.99489 0.93269 0.94483 1.25989 0.94328 0.95703 1.03140 1.70051 1.46767 1.15505 1.26516 0.85685 0.78648 0.80206 0.78292 1.19103 1.20845 1.17105 0.88283 0.90897 0.90850 0.85247 0.90558 0.89599 0.87972 0.90753 0.90107 0.91446 0.82799 0.83929 0.91311 0.91369 0.91702 0.91628 0.95740 0.95876 0.92390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.40 9.82 71.24 0.70 -0.70 16 2 C 0.07 1.62 6.74 41.52 0.28 1.90 16 3 N -0.49 -11.42 10.07 -179.41 -1.81 -13.22 16 4 C 0.06 1.25 6.47 88.52 0.57 1.82 16 5 C -0.05 -0.69 4.24 -11.01 -0.05 -0.74 16 6 C -0.12 -1.40 7.63 31.18 0.24 -1.16 16 7 C -0.13 -1.24 8.09 31.18 0.25 -0.99 16 8 C -0.13 -1.74 7.63 31.12 0.24 -1.50 16 9 S 0.14 2.61 23.18 -56.49 -1.31 1.30 16 10 C -0.24 -4.98 5.08 24.64 0.13 -4.86 16 11 C -0.03 -0.48 5.74 29.10 0.17 -0.31 16 12 C 0.46 12.15 7.95 71.24 0.57 12.71 16 13 O -0.53 -17.83 15.78 21.98 0.35 -17.48 16 14 O -0.36 -10.36 10.22 -51.46 -0.53 -10.89 16 15 C 0.08 2.49 5.47 71.98 0.39 2.89 16 16 C -0.09 -3.55 5.53 30.59 0.17 -3.38 16 17 C -0.01 -0.46 4.04 29.85 0.12 -0.34 16 18 C -0.53 -30.65 9.66 25.60 0.25 -30.41 16 19 H 0.04 2.32 7.99 -2.91 -0.02 2.30 16 20 C 0.01 0.32 5.47 84.66 0.46 0.79 16 21 N -0.95 -59.32 13.96 21.45 0.30 -59.02 16 22 Si 0.95 44.17 27.47 68.60 1.88 46.06 16 23 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 24 H -0.28 -12.91 7.11 99.48 0.71 -12.21 16 25 H -0.25 -10.73 6.54 99.48 0.65 -10.08 16 26 H 0.10 1.27 8.14 -2.38 -0.02 1.25 16 27 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 28 H 0.07 1.26 7.36 -2.38 -0.02 1.24 16 29 H 0.13 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.08 1.21 7.74 -2.38 -0.02 1.19 16 31 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16 33 H 0.07 0.71 8.14 -2.38 -0.02 0.69 16 34 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 35 H 0.07 1.24 8.09 -2.39 -0.02 1.22 16 36 H 0.15 1.82 7.44 -2.38 -0.02 1.80 16 37 H 0.14 1.78 8.14 -2.39 -0.02 1.77 16 38 H 0.07 2.25 8.13 -2.39 -0.02 2.23 16 39 H 0.07 2.23 8.13 -2.39 -0.02 2.21 16 40 H 0.06 2.49 8.14 -2.39 -0.02 2.47 16 41 H 0.06 2.52 8.14 -2.39 -0.02 2.50 16 42 H 0.02 1.10 7.20 -2.39 -0.02 1.09 16 43 H 0.02 1.03 7.57 -2.39 -0.02 1.01 16 44 H 0.27 15.57 8.31 -92.71 -0.77 14.80 16 Total: -1.00 -72.76 380.38 4.30 -68.46 By element: Atomic # 1 Polarization: 8.15 SS G_CDS: 0.93 Total: 9.07 kcal Atomic # 6 Polarization: -28.76 SS G_CDS: 4.49 Total: -24.28 kcal Atomic # 7 Polarization: -70.73 SS G_CDS: -1.51 Total: -72.24 kcal Atomic # 8 Polarization: -28.19 SS G_CDS: -0.18 Total: -28.37 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 1.88 Total: 46.06 kcal Atomic # 16 Polarization: 2.61 SS G_CDS: -1.31 Total: 1.30 kcal Total: -72.76 4.30 -68.46 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884811640.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.775 kcal (2) G-P(sol) polarization free energy of solvation -72.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds