Wall clock time and date at job start Tue Mar 31 2020 14:38:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53033 * 109.45913 * 2 1 4 4 C 1.53194 * 109.31397 * 178.62365 * 3 2 1 5 5 N 1.46923 * 108.77371 * 54.63356 * 4 3 2 6 6 S 1.65607 * 120.63342 * 126.36949 * 5 4 3 7 7 O 1.42100 * 106.39611 * 336.46282 * 6 5 4 8 8 O 1.42096 * 106.40491 * 203.54292 * 6 5 4 9 9 C 1.76201 * 107.21803 * 89.99758 * 6 5 4 10 10 C 1.38243 * 119.99704 * 90.00230 * 9 6 5 11 11 C 1.38233 * 119.99586 * 179.97438 * 10 9 6 12 12 C 1.38231 * 120.00354 * 0.02572 * 11 10 9 13 13 C 1.50696 * 120.00100 * 179.97438 * 12 11 10 14 14 C 1.50706 * 109.47259 * 89.99885 * 13 12 11 15 15 H 1.08000 * 119.99302 * 0.02562 * 14 13 12 16 16 C 1.37871 * 120.00436 * 179.72713 * 14 13 12 17 17 N 1.31515 * 119.99684 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 120.00405 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47050 * 59.99579 * 18 16 14 20 20 H 1.48496 * 109.47289 * 179.97438 * 18 16 14 21 21 H 1.48504 * 109.46492 * 299.99554 * 18 16 14 22 22 C 1.38233 * 119.99938 * 0.25276 * 12 11 10 23 23 C 1.38231 * 119.99993 * 359.48995 * 22 12 11 24 24 C 1.46930 * 118.73937 * 306.64581 * 5 4 3 25 25 C 1.52758 * 109.01028 * 53.30700 * 24 5 4 26 26 H 1.09004 * 109.46983 * 60.00188 * 1 2 3 27 27 H 1.09000 * 109.47474 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47496 * 300.00102 * 1 2 3 29 29 H 1.09004 * 109.45784 * 119.97036 * 2 1 3 30 30 H 1.08999 * 109.50175 * 58.67590 * 3 2 1 31 31 H 1.09001 * 109.52542 * 298.58871 * 3 2 1 32 32 H 1.09000 * 109.58861 * 294.84828 * 4 3 2 33 33 H 1.08996 * 109.70895 * 174.49108 * 4 3 2 34 34 H 1.08001 * 119.99577 * 0.02562 * 10 9 6 35 35 H 1.08005 * 119.99712 * 180.02562 * 11 10 9 36 36 H 1.09001 * 109.47545 * 330.00225 * 13 12 11 37 37 H 1.08998 * 109.47669 * 210.00168 * 13 12 11 38 38 H 0.97004 * 120.00247 * 180.02562 * 17 16 14 39 39 H 1.08004 * 120.00309 * 179.73170 * 22 12 11 40 40 H 1.08006 * 120.00300 * 180.25191 * 23 22 12 41 41 H 1.08997 * 109.58633 * 173.14695 * 24 5 4 42 42 H 1.09000 * 109.58447 * 293.56369 * 24 5 4 43 43 H 1.08996 * 109.56604 * 185.55156 * 25 24 5 44 44 H 1.09002 * 109.35717 * 65.49788 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0397 1.4429 0.0000 4 6 3.5713 1.4392 0.0347 5 7 4.0676 0.6238 -1.0822 6 16 5.1653 1.2431 -2.1565 7 8 5.0236 2.6560 -2.1052 8 8 5.0237 0.4906 -3.3535 9 6 6.7712 0.8811 -1.5282 10 6 7.4012 -0.2982 -1.8796 11 6 8.6613 -0.5819 -1.3871 12 6 9.2912 0.3132 -0.5428 13 6 10.6646 0.0036 -0.0055 14 6 11.7072 0.5471 -0.9483 15 1 11.4053 1.0653 -1.8465 16 6 13.0463 0.3882 -0.6611 17 7 13.4138 -0.2372 0.4359 18 14 14.3386 1.0625 -1.8293 19 1 14.1711 2.5324 -1.9577 20 1 15.6920 0.7636 -1.2963 21 1 14.1798 0.4278 -3.1625 22 6 8.6588 1.4898 -0.1868 23 6 7.4010 1.7760 -0.6835 24 6 3.5668 -0.7494 -1.2316 25 6 2.0396 -0.7230 -1.2488 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 1.8930 -0.5134 0.8904 30 1 1.6573 1.9640 0.8777 31 1 1.6976 1.9502 -0.9021 32 1 3.9144 1.0142 0.9780 33 1 3.9437 2.4588 -0.0635 34 1 6.9092 -0.9973 -2.5396 35 1 9.1537 -1.5030 -1.6620 36 1 10.7844 -1.0760 0.0854 37 1 10.7843 0.4661 0.9742 38 1 14.3559 -0.3487 0.6382 39 1 9.1491 2.1872 0.4763 40 1 6.9085 2.6971 -0.4087 41 1 3.9342 -1.1727 -2.1664 42 1 3.9096 -1.3565 -0.3937 43 1 1.6569 -1.7435 -1.2601 44 1 1.6974 -0.1958 -2.1394 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000884873300.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:38:15 Heat of formation + Delta-G solvation = -72.880065 kcal Electronic energy + Delta-G solvation = -25191.459929 eV Core-core repulsion = 21620.532139 eV Total energy + Delta-G solvation = -3570.927790 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -38.97332 -38.79304 -37.21234 -35.76110 -34.02323 -33.67486 -31.55434 -31.36510 -30.57206 -28.02956 -27.41099 -23.72375 -23.65029 -22.96642 -22.32054 -20.86043 -20.48638 -18.91411 -17.84287 -17.33127 -16.44672 -16.08619 -15.15033 -15.00723 -14.92867 -14.56509 -14.50061 -14.37809 -14.22501 -14.00164 -13.73883 -13.13819 -12.98155 -12.83370 -12.43499 -12.22215 -12.16943 -12.00528 -11.91808 -11.90444 -11.70243 -11.48694 -11.44390 -11.12662 -10.97074 -10.90305 -10.65402 -10.62549 -10.50058 -10.47879 -9.76521 -9.66815 -9.16971 -8.58928 -8.53767 -8.37330 -6.17339 -4.22451 0.46459 1.33827 1.79710 2.98341 3.25922 3.30015 3.33572 3.79014 4.09304 4.31306 4.36653 4.42704 4.49344 4.50928 4.89915 4.90337 5.10335 5.15757 5.19605 5.22110 5.24228 5.31096 5.34412 5.47926 5.52233 5.53752 5.60832 5.72303 5.73192 5.81869 5.85610 5.86292 5.91366 6.04388 6.13930 6.25369 6.33088 6.42221 6.54744 6.83905 6.90660 7.28993 7.43187 7.58808 7.77545 8.13013 8.82044 9.42460 10.92660 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.028328 B = 0.002748 C = 0.002701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.192179 B =10185.550288 C =10363.081098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.092 4.092 3 C -0.127 4.127 4 C 0.117 3.883 5 N -0.999 5.999 6 S 2.695 3.305 7 O -0.963 6.963 8 O -0.963 6.963 9 C -0.704 4.704 10 C -0.024 4.024 11 C -0.145 4.145 12 C 0.026 3.974 13 C 0.040 3.960 14 C -0.518 4.518 15 H 0.058 0.942 16 C 0.061 3.939 17 N -0.892 5.892 18 Si 0.899 3.101 19 H -0.275 1.275 20 H -0.285 1.285 21 H -0.275 1.275 22 C -0.145 4.145 23 C -0.024 4.024 24 C 0.117 3.883 25 C -0.127 4.127 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.054 0.946 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.094 0.906 34 H 0.129 0.871 35 H 0.129 0.871 36 H 0.034 0.966 37 H 0.035 0.965 38 H 0.265 0.735 39 H 0.128 0.872 40 H 0.128 0.872 41 H 0.094 0.906 42 H 0.069 0.931 43 H 0.075 0.925 44 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.086 -0.649 1.075 24.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.111 4.111 3 C -0.166 4.166 4 C -0.008 4.008 5 N -0.837 5.837 6 S 2.789 3.211 7 O -0.954 6.954 8 O -0.954 6.954 9 C -0.793 4.793 10 C -0.043 4.043 11 C -0.164 4.164 12 C 0.025 3.975 13 C 0.003 3.997 14 C -0.556 4.556 15 H 0.076 0.924 16 C -0.141 4.141 17 N -0.530 5.530 18 Si 0.726 3.274 19 H -0.200 1.200 20 H -0.211 1.211 21 H -0.200 1.200 22 C -0.164 4.164 23 C -0.043 4.043 24 C -0.008 4.008 25 C -0.166 4.166 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.091 0.909 30 H 0.093 0.907 31 H 0.087 0.913 32 H 0.088 0.912 33 H 0.112 0.888 34 H 0.146 0.854 35 H 0.146 0.854 36 H 0.053 0.947 37 H 0.053 0.947 38 H 0.074 0.926 39 H 0.146 0.854 40 H 0.146 0.854 41 H 0.112 0.888 42 H 0.088 0.912 43 H 0.093 0.907 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -24.127 -0.263 0.408 24.132 hybrid contribution 1.427 0.045 -0.067 1.430 sum -22.699 -0.218 0.341 22.703 Atomic orbital electron populations 1.21830 0.95126 1.01688 1.01787 1.21099 0.95504 0.96032 0.98451 1.21937 0.95046 0.96806 1.02782 1.21463 0.94630 0.95615 0.89109 1.57753 1.58126 1.23014 1.44807 1.01682 0.73165 0.73184 0.73035 1.93538 1.86351 1.29068 1.86429 1.93537 1.86354 1.72782 1.42715 1.30410 1.24411 1.06035 1.18432 1.20761 0.95003 0.93630 0.94931 1.21242 0.94803 1.01016 0.99365 1.21109 0.96027 0.91102 0.89217 1.18530 0.85970 0.98300 0.96888 1.20932 0.90101 1.37276 1.07299 0.92353 1.25001 0.98637 0.95042 0.95452 1.69937 1.16943 1.41634 1.24490 0.86533 0.80233 0.79598 0.80997 1.20037 1.21098 1.20023 1.21243 0.94836 0.98070 1.02290 1.20758 0.95015 0.96340 0.92207 1.21374 0.94647 0.81790 1.03001 1.21868 0.95112 1.01088 0.98544 0.92705 0.92681 0.92681 0.90896 0.90702 0.91350 0.91226 0.88796 0.85363 0.85356 0.94738 0.94721 0.92569 0.85361 0.85368 0.88788 0.91244 0.90661 0.91372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.87 9.19 37.15 0.34 -0.53 16 2 C -0.09 -0.64 2.68 -90.59 -0.24 -0.88 16 3 C -0.13 -0.96 5.36 -26.61 -0.14 -1.10 16 4 C 0.12 1.07 6.48 -3.71 -0.02 1.04 16 5 N -1.00 -10.84 3.30 -113.77 -0.37 -11.21 16 6 S 2.69 38.64 5.73 -107.50 -0.62 38.03 16 7 O -0.96 -15.71 15.87 -57.17 -0.91 -16.62 16 8 O -0.96 -15.70 15.86 -57.17 -0.91 -16.61 16 9 C -0.70 -11.30 5.97 -39.58 -0.24 -11.54 16 10 C -0.02 -0.39 9.52 -39.58 -0.38 -0.77 16 11 C -0.15 -2.72 9.70 -39.59 -0.38 -3.11 16 12 C 0.03 0.54 5.07 -104.63 -0.53 0.01 16 13 C 0.04 0.98 5.10 -29.03 -0.15 0.83 16 14 C -0.52 -14.11 9.09 -34.44 -0.31 -14.42 16 15 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 16 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 17 N -0.89 -25.58 13.29 55.43 0.74 -24.85 16 18 Si 0.90 21.19 29.54 -169.99 -5.02 16.17 16 19 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 20 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 21 H -0.27 -6.41 7.11 56.52 0.40 -6.00 16 22 C -0.15 -2.73 9.70 -39.59 -0.38 -3.11 16 23 C -0.02 -0.39 9.52 -39.59 -0.38 -0.77 16 24 C 0.12 1.07 6.45 -3.93 -0.03 1.04 16 25 C -0.13 -0.96 5.34 -26.84 -0.14 -1.11 16 26 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 27 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 28 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 32 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 33 H 0.09 0.89 6.92 -51.93 -0.36 0.53 16 34 H 0.13 1.81 7.62 -52.49 -0.40 1.41 16 35 H 0.13 2.27 8.06 -52.48 -0.42 1.85 16 36 H 0.03 0.88 8.09 -51.93 -0.42 0.46 16 37 H 0.03 0.89 8.08 -51.93 -0.42 0.47 16 38 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 39 H 0.13 2.27 8.06 -52.48 -0.42 1.85 16 40 H 0.13 1.81 7.62 -52.48 -0.40 1.41 16 41 H 0.09 0.89 6.91 -51.93 -0.36 0.53 16 42 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 43 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 44 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 LS Contribution 368.38 15.07 5.55 5.55 Total: -1.00 -32.14 368.38 -11.60 -43.74 By element: Atomic # 1 Polarization: 5.60 SS G_CDS: -6.97 Total: -1.37 kcal Atomic # 6 Polarization: -29.75 SS G_CDS: -3.08 Total: -32.83 kcal Atomic # 7 Polarization: -36.42 SS G_CDS: 0.36 Total: -36.06 kcal Atomic # 8 Polarization: -31.41 SS G_CDS: -1.81 Total: -33.23 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Atomic # 16 Polarization: 38.64 SS G_CDS: -0.62 Total: 38.03 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -32.14 -11.60 -43.74 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884873300.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.141 kcal (2) G-P(sol) polarization free energy of solvation -32.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds