Wall clock time and date at job start Tue Mar 31 2020 14:38:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53033 * 109.45913 * 2 1 4 4 C 1.53194 * 109.31397 * 178.62365 * 3 2 1 5 5 N 1.46923 * 108.77371 * 54.63356 * 4 3 2 6 6 S 1.65607 * 120.63342 * 126.36949 * 5 4 3 7 7 O 1.42100 * 106.39611 * 336.46282 * 6 5 4 8 8 O 1.42096 * 106.40491 * 203.54292 * 6 5 4 9 9 C 1.76201 * 107.21803 * 89.99758 * 6 5 4 10 10 C 1.38243 * 119.99704 * 90.00230 * 9 6 5 11 11 C 1.38233 * 119.99586 * 179.97438 * 10 9 6 12 12 C 1.38231 * 120.00354 * 0.02572 * 11 10 9 13 13 C 1.50696 * 120.00100 * 179.97438 * 12 11 10 14 14 C 1.50706 * 109.47259 * 89.99885 * 13 12 11 15 15 H 1.08000 * 119.99302 * 0.02562 * 14 13 12 16 16 C 1.37871 * 120.00436 * 179.72713 * 14 13 12 17 17 N 1.31515 * 119.99684 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 120.00405 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47050 * 59.99579 * 18 16 14 20 20 H 1.48496 * 109.47289 * 179.97438 * 18 16 14 21 21 H 1.48504 * 109.46492 * 299.99554 * 18 16 14 22 22 C 1.38233 * 119.99938 * 0.25276 * 12 11 10 23 23 C 1.38231 * 119.99993 * 359.48995 * 22 12 11 24 24 C 1.46930 * 118.73937 * 306.64581 * 5 4 3 25 25 C 1.52758 * 109.01028 * 53.30700 * 24 5 4 26 26 H 1.09004 * 109.46983 * 60.00188 * 1 2 3 27 27 H 1.09000 * 109.47474 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47496 * 300.00102 * 1 2 3 29 29 H 1.09004 * 109.45784 * 119.97036 * 2 1 3 30 30 H 1.08999 * 109.50175 * 58.67590 * 3 2 1 31 31 H 1.09001 * 109.52542 * 298.58871 * 3 2 1 32 32 H 1.09000 * 109.58861 * 294.84828 * 4 3 2 33 33 H 1.08996 * 109.70895 * 174.49108 * 4 3 2 34 34 H 1.08001 * 119.99577 * 0.02562 * 10 9 6 35 35 H 1.08005 * 119.99712 * 180.02562 * 11 10 9 36 36 H 1.09001 * 109.47545 * 330.00225 * 13 12 11 37 37 H 1.08998 * 109.47669 * 210.00168 * 13 12 11 38 38 H 0.97004 * 120.00247 * 180.02562 * 17 16 14 39 39 H 1.08004 * 120.00309 * 179.73170 * 22 12 11 40 40 H 1.08006 * 120.00300 * 180.25191 * 23 22 12 41 41 H 1.08997 * 109.58633 * 173.14695 * 24 5 4 42 42 H 1.09000 * 109.58447 * 293.56369 * 24 5 4 43 43 H 1.08996 * 109.56604 * 185.55156 * 25 24 5 44 44 H 1.09002 * 109.35717 * 65.49788 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0397 1.4429 0.0000 4 6 3.5713 1.4392 0.0347 5 7 4.0676 0.6238 -1.0822 6 16 5.1653 1.2431 -2.1565 7 8 5.0236 2.6560 -2.1052 8 8 5.0237 0.4906 -3.3535 9 6 6.7712 0.8811 -1.5282 10 6 7.4012 -0.2982 -1.8796 11 6 8.6613 -0.5819 -1.3871 12 6 9.2912 0.3132 -0.5428 13 6 10.6646 0.0036 -0.0055 14 6 11.7072 0.5471 -0.9483 15 1 11.4053 1.0653 -1.8465 16 6 13.0463 0.3882 -0.6611 17 7 13.4138 -0.2372 0.4359 18 14 14.3386 1.0625 -1.8293 19 1 14.1711 2.5324 -1.9577 20 1 15.6920 0.7636 -1.2963 21 1 14.1798 0.4278 -3.1625 22 6 8.6588 1.4898 -0.1868 23 6 7.4010 1.7760 -0.6835 24 6 3.5668 -0.7494 -1.2316 25 6 2.0396 -0.7230 -1.2488 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 1.8930 -0.5134 0.8904 30 1 1.6573 1.9640 0.8777 31 1 1.6976 1.9502 -0.9021 32 1 3.9144 1.0142 0.9780 33 1 3.9437 2.4588 -0.0635 34 1 6.9092 -0.9973 -2.5396 35 1 9.1537 -1.5030 -1.6620 36 1 10.7844 -1.0760 0.0854 37 1 10.7843 0.4661 0.9742 38 1 14.3559 -0.3487 0.6382 39 1 9.1491 2.1872 0.4763 40 1 6.9085 2.6971 -0.4087 41 1 3.9342 -1.1727 -2.1664 42 1 3.9096 -1.3565 -0.3937 43 1 1.6569 -1.7435 -1.2601 44 1 1.6974 -0.1958 -2.1394 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000884873300.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:38:14 Heat of formation + Delta-G solvation = -91.438321 kcal Electronic energy + Delta-G solvation = -25192.264675 eV Core-core repulsion = 21620.532139 eV Total energy + Delta-G solvation = -3571.732537 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.24154 -39.63617 -38.43737 -36.99464 -35.60700 -34.69957 -33.32628 -32.03774 -31.95465 -29.26155 -28.61190 -25.59567 -24.32741 -23.70152 -23.64564 -22.44019 -21.17150 -19.98119 -18.86032 -18.62592 -18.46597 -17.17166 -16.86703 -16.19538 -16.01763 -15.51142 -15.44599 -15.43902 -15.01534 -15.00911 -14.78671 -14.58304 -14.47286 -13.93123 -13.75398 -13.41756 -13.41013 -13.22138 -13.16021 -13.03538 -12.72198 -12.66775 -12.66461 -12.61480 -12.13807 -12.08321 -12.05312 -11.72826 -11.69258 -11.44304 -11.22825 -11.19204 -10.65969 -10.06719 -9.97897 -9.88437 -8.27917 -6.40832 -0.68366 -0.07381 0.38237 1.37817 1.39432 1.47943 1.93691 2.34196 2.57187 2.77312 3.04577 3.21736 3.71865 3.84100 3.91705 3.92573 3.96128 4.14670 4.24800 4.26497 4.44169 4.46196 4.48484 4.60225 4.78054 4.78895 4.80478 4.89516 4.89844 4.93106 4.97924 5.05836 5.09106 5.18674 5.23200 5.24734 5.29389 5.31511 5.32130 5.46690 5.60384 5.65914 5.68436 5.84846 5.91159 6.08860 6.70598 7.28187 8.81957 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.028328 B = 0.002748 C = 0.002701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.192179 B =10185.550288 C =10363.081098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.091 4.091 3 C -0.126 4.126 4 C 0.108 3.892 5 N -0.991 5.991 6 S 2.715 3.285 7 O -0.982 6.982 8 O -0.982 6.982 9 C -0.701 4.701 10 C -0.020 4.020 11 C -0.154 4.154 12 C -0.004 4.004 13 C 0.049 3.951 14 C -0.535 4.535 15 H 0.053 0.947 16 C 0.010 3.990 17 N -0.925 5.925 18 Si 0.964 3.036 19 H -0.269 1.269 20 H -0.278 1.278 21 H -0.269 1.269 22 C -0.154 4.154 23 C -0.020 4.020 24 C 0.108 3.892 25 C -0.126 4.126 26 H 0.049 0.951 27 H 0.060 0.940 28 H 0.060 0.940 29 H 0.080 0.920 30 H 0.092 0.908 31 H 0.058 0.942 32 H 0.086 0.914 33 H 0.089 0.911 34 H 0.155 0.845 35 H 0.130 0.870 36 H 0.014 0.986 37 H 0.014 0.986 38 H 0.268 0.732 39 H 0.130 0.870 40 H 0.155 0.845 41 H 0.089 0.911 42 H 0.086 0.914 43 H 0.093 0.907 44 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.072 -0.431 0.685 26.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.110 4.110 3 C -0.165 4.165 4 C -0.017 4.017 5 N -0.831 5.831 6 S 2.808 3.192 7 O -0.972 6.972 8 O -0.972 6.972 9 C -0.788 4.788 10 C -0.039 4.039 11 C -0.173 4.173 12 C -0.004 4.004 13 C 0.012 3.988 14 C -0.573 4.573 15 H 0.071 0.929 16 C -0.189 4.189 17 N -0.564 5.564 18 Si 0.788 3.212 19 H -0.194 1.194 20 H -0.203 1.203 21 H -0.194 1.194 22 C -0.173 4.173 23 C -0.039 4.039 24 C -0.017 4.017 25 C -0.165 4.165 26 H 0.069 0.931 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.099 0.901 30 H 0.111 0.889 31 H 0.077 0.923 32 H 0.104 0.896 33 H 0.107 0.893 34 H 0.172 0.828 35 H 0.148 0.852 36 H 0.032 0.968 37 H 0.032 0.968 38 H 0.077 0.923 39 H 0.148 0.852 40 H 0.172 0.828 41 H 0.108 0.892 42 H 0.104 0.896 43 H 0.111 0.889 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -26.096 -0.046 0.020 26.096 hybrid contribution 1.877 -0.038 0.080 1.879 sum -24.219 -0.084 0.100 24.220 Atomic orbital electron populations 1.21803 0.94335 1.02161 1.01897 1.21112 0.96138 0.95421 0.98321 1.21961 0.93788 0.97555 1.03186 1.21728 0.95761 0.95258 0.88942 1.57545 1.56660 1.24077 1.44862 1.01065 0.72668 0.72538 0.72963 1.93512 1.86410 1.30428 1.86846 1.93511 1.86412 1.73080 1.44189 1.30891 1.25554 1.05311 1.16999 1.21018 0.94008 0.94294 0.94615 1.21306 0.95804 1.00872 0.99338 1.20821 0.94903 0.93138 0.91571 1.18254 0.88299 0.96503 0.95727 1.21257 0.91259 1.37228 1.07538 0.92871 1.25863 1.00801 0.95246 0.97019 1.70046 1.17511 1.42747 1.26113 0.85519 0.77656 0.79073 0.78960 1.19394 1.20316 1.19366 1.21307 0.95830 0.97478 1.02715 1.21015 0.94024 0.97302 0.91596 1.21639 0.95776 0.80731 1.03533 1.21892 0.93855 1.02211 0.98573 0.93141 0.92055 0.92059 0.90123 0.88920 0.92299 0.89595 0.89254 0.82763 0.85177 0.96819 0.96820 0.92341 0.85189 0.82770 0.89249 0.89610 0.88869 0.92321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.33 9.19 71.98 0.66 -0.67 16 2 C -0.09 -1.00 2.68 -10.77 -0.03 -1.03 16 3 C -0.13 -1.59 5.36 30.67 0.16 -1.43 16 4 C 0.11 1.69 6.48 86.36 0.56 2.25 16 5 N -0.99 -19.30 3.30 -513.85 -1.69 -20.99 16 6 S 2.72 72.98 5.73 -56.49 -0.32 72.66 16 7 O -0.98 -30.34 15.87 -128.00 -2.03 -32.37 16 8 O -0.98 -30.32 15.86 -128.00 -2.03 -32.35 16 9 C -0.70 -21.42 5.97 22.27 0.13 -21.29 16 10 C -0.02 -0.64 9.52 22.27 0.21 -0.43 16 11 C -0.15 -5.82 9.70 22.27 0.22 -5.60 16 12 C 0.00 -0.17 5.07 -19.87 -0.10 -0.27 16 13 C 0.05 2.53 5.10 29.10 0.15 2.68 16 14 C -0.54 -29.96 9.09 25.60 0.23 -29.72 16 15 H 0.05 2.96 7.74 -2.91 -0.02 2.93 16 16 C 0.01 0.55 5.46 84.65 0.46 1.01 16 17 N -0.92 -54.32 13.29 21.45 0.28 -54.03 16 18 Si 0.96 43.74 29.54 68.60 2.03 45.76 16 19 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 20 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 21 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 22 C -0.15 -5.82 9.70 22.27 0.22 -5.61 16 23 C -0.02 -0.65 9.52 22.27 0.21 -0.43 16 24 C 0.11 1.69 6.45 86.22 0.56 2.25 16 25 C -0.13 -1.59 5.34 30.53 0.16 -1.43 16 26 H 0.05 0.51 8.14 -2.38 -0.02 0.49 16 27 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 28 H 0.06 0.49 8.14 -2.39 -0.02 0.48 16 29 H 0.08 0.79 8.14 -2.38 -0.02 0.78 16 30 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.09 1.50 6.92 -2.39 -0.02 1.49 16 34 H 0.15 4.05 7.62 -2.91 -0.02 4.02 16 35 H 0.13 4.71 8.06 -2.91 -0.02 4.69 16 36 H 0.01 0.74 8.09 -2.39 -0.02 0.72 16 37 H 0.01 0.73 8.08 -2.39 -0.02 0.72 16 38 H 0.27 14.77 8.31 -92.71 -0.77 14.00 16 39 H 0.13 4.71 8.06 -2.91 -0.02 4.69 16 40 H 0.15 4.05 7.62 -2.91 -0.02 4.02 16 41 H 0.09 1.50 6.91 -2.39 -0.02 1.49 16 42 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 43 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 44 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 Total: -1.00 -69.36 368.38 1.01 -68.35 By element: Atomic # 1 Polarization: 11.72 SS G_CDS: 0.97 Total: 12.69 kcal Atomic # 6 Polarization: -63.53 SS G_CDS: 3.81 Total: -59.73 kcal Atomic # 7 Polarization: -73.61 SS G_CDS: -1.41 Total: -75.02 kcal Atomic # 8 Polarization: -60.66 SS G_CDS: -4.06 Total: -64.72 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.76 kcal Atomic # 16 Polarization: 72.98 SS G_CDS: -0.32 Total: 72.66 kcal Total: -69.36 1.01 -68.35 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884873300.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.088 kcal (2) G-P(sol) polarization free energy of solvation -69.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.350 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds