Wall clock time and date at job start Tue Mar 31 2020 13:49:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46498 * 110.01925 * 2 1 4 4 S 1.65602 * 119.99612 * 59.02068 * 3 2 1 5 5 O 1.42104 * 106.40175 * 178.81816 * 4 3 2 6 6 O 1.42095 * 106.40656 * 311.73868 * 4 3 2 7 7 C 1.76203 * 107.21635 * 65.28001 * 4 3 2 8 8 C 1.38232 * 120.00096 * 269.72284 * 7 4 3 9 9 C 1.38229 * 119.99999 * 179.74363 * 8 7 4 10 10 C 1.38238 * 119.99805 * 0.55619 * 9 8 7 11 11 C 1.50706 * 119.99882 * 179.72466 * 10 9 8 12 12 C 1.50699 * 109.47035 * 269.97549 * 11 10 9 13 13 H 1.08003 * 119.99536 * 359.97438 * 12 11 10 14 14 C 1.37881 * 120.00213 * 180.02562 * 12 11 10 15 15 N 1.31510 * 119.99580 * 359.97438 * 14 12 11 16 16 Si 1.86793 * 119.99900 * 179.97438 * 14 12 11 17 17 H 1.48499 * 109.47284 * 90.00223 * 16 14 12 18 18 H 1.48506 * 109.46866 * 209.99477 * 16 14 12 19 19 H 1.48494 * 109.47606 * 329.99930 * 16 14 12 20 20 C 1.38234 * 120.00246 * 359.69727 * 10 9 8 21 21 C 1.38235 * 119.99720 * 0.02740 * 20 10 9 22 22 C 1.53874 * 110.03247 * 121.39118 * 2 1 3 23 23 C 1.54375 * 106.54495 * 119.34650 * 22 2 1 24 24 C 1.54887 * 104.21444 * 23.57312 * 23 22 2 25 25 C 1.54265 * 110.03085 * 238.61006 * 2 1 3 26 26 H 1.08997 * 109.47529 * 60.69859 * 1 2 3 27 27 H 1.09001 * 109.47296 * 180.69983 * 1 2 3 28 28 H 1.09003 * 109.47458 * 300.70077 * 1 2 3 29 29 H 0.97001 * 120.00384 * 239.30546 * 3 2 1 30 30 H 1.08001 * 119.99701 * 359.97438 * 8 7 4 31 31 H 1.08003 * 120.00385 * 180.27041 * 9 8 7 32 32 H 1.09000 * 109.46954 * 29.97327 * 11 10 9 33 33 H 1.09001 * 109.47121 * 149.97126 * 11 10 9 34 34 H 0.97004 * 119.99998 * 180.02562 * 15 14 12 35 35 H 1.07994 * 120.00254 * 180.02562 * 20 10 9 36 36 H 1.07993 * 119.99689 * 179.97438 * 21 20 10 37 37 H 1.08994 * 110.03470 * 238.61693 * 22 2 1 38 38 H 1.08997 * 110.03176 * 0.05078 * 22 2 1 39 39 H 1.09000 * 110.46620 * 264.89734 * 23 22 2 40 40 H 1.09001 * 110.60440 * 142.32165 * 23 22 2 41 41 H 1.09002 * 110.75597 * 203.75642 * 24 23 22 42 42 H 1.09006 * 110.75500 * 80.39416 * 24 23 22 43 43 H 1.08998 * 110.48646 * 335.73461 * 25 2 1 44 44 H 1.09001 * 110.48857 * 98.24722 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0315 1.3765 0.0000 4 16 1.6213 2.4071 1.2296 5 8 2.2782 3.6375 0.9579 6 8 0.2141 2.2969 1.3931 7 6 2.3448 1.7722 2.7055 8 6 1.6378 0.8855 3.4958 9 6 2.2075 0.3833 4.6509 10 6 3.4797 0.7768 5.0216 11 6 4.0984 0.2341 6.2841 12 6 3.7554 1.1379 7.4402 13 1 3.1504 2.0175 7.2770 14 6 4.2150 0.8424 8.7062 15 7 4.9521 -0.2284 8.9048 16 14 3.7904 1.9631 10.1390 17 1 2.5217 1.5094 10.7633 18 1 4.8817 1.9153 11.1451 19 1 3.6303 3.3554 9.6481 20 6 4.1848 1.6676 4.2340 21 6 3.6172 2.1654 3.0760 22 6 2.0571 -0.7530 1.2340 23 6 2.8890 -1.9399 0.7026 24 6 3.3143 -1.4994 -0.7201 25 6 2.0584 -0.7549 -1.2372 26 1 -0.3634 0.5029 -0.8961 27 1 -0.3634 -1.0276 0.0126 28 1 -0.3634 0.5247 0.8836 29 1 2.6004 1.6854 -0.7223 30 1 0.6418 0.5821 3.2089 31 1 1.6568 -0.3129 5.2661 32 1 3.7111 -0.7662 6.4776 33 1 5.1812 0.1882 6.1675 34 1 5.2751 -0.4365 9.7955 35 1 5.1788 1.9747 4.5234 36 1 4.1679 2.8616 2.4609 37 1 2.6860 -0.0944 1.8329 38 1 1.2229 -1.1192 1.8324 39 1 2.2794 -2.8422 0.6563 40 1 3.7657 -2.1047 1.3290 41 1 3.5335 -2.3663 -1.3435 42 1 4.1713 -0.8272 -0.6764 43 1 1.3145 -1.4658 -1.5968 44 1 2.3267 -0.0529 -2.0267 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000884977445.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:49:31 Heat of formation + Delta-G solvation = -64.778982 kcal Electronic energy + Delta-G solvation = -26086.008844 eV Core-core repulsion = 22515.432343 eV Total energy + Delta-G solvation = -3570.576501 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.52957 -38.72397 -37.09026 -35.75496 -33.72715 -33.59770 -31.64484 -30.66458 -29.81414 -28.91613 -27.41955 -24.99450 -23.73020 -22.38482 -21.05928 -20.85603 -20.33292 -19.05968 -17.70468 -17.34623 -16.45310 -16.40095 -15.55604 -15.23488 -15.08196 -14.47973 -14.38318 -14.24920 -13.79598 -13.75649 -13.17948 -13.08109 -13.01944 -12.82982 -12.55114 -12.20006 -11.97825 -11.77035 -11.73792 -11.60922 -11.49189 -11.27789 -11.18163 -11.12471 -10.92683 -10.91674 -10.64244 -10.51661 -10.47784 -10.43818 -9.75403 -9.68488 -9.52048 -8.57353 -8.53800 -8.32913 -6.17950 -4.22902 0.54476 1.32020 1.79241 3.07620 3.23814 3.30475 3.34900 3.76195 4.08624 4.25538 4.36681 4.41078 4.50629 4.64723 5.01334 5.14336 5.17454 5.20154 5.21028 5.25653 5.28289 5.38243 5.47667 5.60140 5.70523 5.72531 5.74720 5.80017 5.88299 5.91027 5.96911 6.03270 6.18837 6.23048 6.24221 6.31420 6.38302 6.50687 6.83290 6.89364 6.92891 7.28250 7.42089 7.58403 7.77205 8.12529 8.81927 9.42173 10.92076 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.018705 B = 0.003599 C = 0.003287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1496.559419 B = 7778.849525 C = 8515.226639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.177 3.823 3 N -1.109 6.109 4 S 2.697 3.303 5 O -0.970 6.970 6 O -0.961 6.961 7 C -0.704 4.704 8 C -0.018 4.018 9 C -0.147 4.147 10 C 0.028 3.972 11 C 0.040 3.960 12 C -0.518 4.518 13 H 0.059 0.941 14 C 0.061 3.939 15 N -0.892 5.892 16 Si 0.898 3.102 17 H -0.278 1.278 18 H -0.285 1.285 19 H -0.272 1.272 20 C -0.147 4.147 21 C -0.022 4.022 22 C -0.167 4.167 23 C -0.119 4.119 24 C -0.126 4.126 25 C -0.118 4.118 26 H 0.060 0.940 27 H 0.066 0.934 28 H 0.097 0.903 29 H 0.414 0.586 30 H 0.130 0.870 31 H 0.128 0.872 32 H 0.034 0.966 33 H 0.034 0.966 34 H 0.264 0.736 35 H 0.128 0.872 36 H 0.128 0.872 37 H 0.095 0.905 38 H 0.079 0.921 39 H 0.065 0.935 40 H 0.069 0.931 41 H 0.066 0.934 42 H 0.068 0.932 43 H 0.079 0.921 44 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.894 -3.030 -20.456 21.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C 0.089 3.911 3 N -0.868 5.868 4 S 2.790 3.210 5 O -0.960 6.960 6 O -0.951 6.951 7 C -0.794 4.794 8 C -0.038 4.038 9 C -0.166 4.166 10 C 0.028 3.972 11 C 0.003 3.997 12 C -0.556 4.556 13 H 0.077 0.923 14 C -0.141 4.141 15 N -0.530 5.530 16 Si 0.726 3.274 17 H -0.204 1.204 18 H -0.210 1.210 19 H -0.197 1.197 20 C -0.166 4.166 21 C -0.041 4.041 22 C -0.206 4.206 23 C -0.156 4.156 24 C -0.164 4.164 25 C -0.157 4.157 26 H 0.080 0.920 27 H 0.085 0.915 28 H 0.116 0.884 29 H 0.249 0.751 30 H 0.147 0.853 31 H 0.146 0.854 32 H 0.053 0.947 33 H 0.052 0.948 34 H 0.074 0.926 35 H 0.146 0.854 36 H 0.146 0.854 37 H 0.113 0.887 38 H 0.097 0.903 39 H 0.084 0.916 40 H 0.087 0.913 41 H 0.085 0.915 42 H 0.087 0.913 43 H 0.098 0.902 44 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -5.433 -2.425 -20.261 21.116 hybrid contribution 0.547 0.198 1.068 1.216 sum -4.886 -2.227 -19.193 19.930 Atomic orbital electron populations 1.22759 0.93350 1.02915 1.05264 1.20824 0.93843 0.80173 0.96288 1.55705 1.66814 1.24130 1.40111 1.01571 0.73909 0.72369 0.73176 1.93560 1.76675 1.41018 1.84777 1.93507 1.29317 1.85951 1.86330 1.30282 1.07962 1.17592 1.23520 1.20767 0.97766 0.91959 0.93292 1.21216 0.96086 1.02407 0.96858 1.21100 0.92592 0.89397 0.94131 1.18533 0.96482 0.96867 0.87832 1.20974 1.33306 1.09647 0.91644 0.92290 1.24995 0.94784 0.95385 0.98925 1.69945 1.34887 1.25570 1.22578 0.86485 0.78133 0.81050 0.81780 1.20442 1.21034 1.19693 1.21227 1.01208 0.99161 0.94969 1.20747 0.92194 0.95074 0.96099 1.23379 1.01195 0.98628 0.97381 1.22300 0.99744 0.97558 0.96044 1.22524 0.97538 0.99839 0.96461 1.22649 0.97920 0.99018 0.96078 0.92050 0.91529 0.88440 0.75112 0.85265 0.85403 0.94738 0.94767 0.92635 0.85432 0.85367 0.88698 0.90269 0.91576 0.91266 0.91480 0.91279 0.90243 0.90992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.82 7.77 37.16 0.29 -1.53 16 2 C 0.18 1.68 1.05 -130.70 -0.14 1.55 16 3 N -1.11 -11.26 5.51 1.44 0.01 -11.25 16 4 S 2.70 37.17 5.67 -107.50 -0.61 36.56 16 5 O -0.97 -15.83 17.28 -57.17 -0.99 -16.82 16 6 O -0.96 -14.85 13.87 -57.17 -0.79 -15.65 16 7 C -0.70 -10.77 3.79 -39.58 -0.15 -10.92 16 8 C -0.02 -0.29 6.68 -39.59 -0.26 -0.55 16 9 C -0.15 -2.62 9.70 -39.58 -0.38 -3.01 16 10 C 0.03 0.57 5.07 -104.62 -0.53 0.04 16 11 C 0.04 0.96 5.10 -29.03 -0.15 0.81 16 12 C -0.52 -13.95 9.09 -34.44 -0.31 -14.26 16 13 H 0.06 1.59 7.74 -52.48 -0.41 1.19 16 14 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 15 N -0.89 -25.40 13.29 55.43 0.74 -24.66 16 16 Si 0.90 21.06 29.54 -169.99 -5.02 16.04 16 17 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 18 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 19 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 20 C -0.15 -2.68 9.70 -39.58 -0.38 -3.06 16 21 C -0.02 -0.35 9.52 -39.58 -0.38 -0.73 16 22 C -0.17 -1.76 4.43 -25.56 -0.11 -1.87 16 23 C -0.12 -1.09 6.83 -25.02 -0.17 -1.26 16 24 C -0.13 -0.98 6.91 -24.74 -0.17 -1.15 16 25 C -0.12 -0.87 6.01 -25.07 -0.15 -1.03 16 26 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.10 1.15 5.36 -51.93 -0.28 0.87 16 29 H 0.41 3.29 8.38 -34.47 -0.29 3.00 16 30 H 0.13 1.73 7.32 -52.49 -0.38 1.35 16 31 H 0.13 2.18 8.06 -52.48 -0.42 1.76 16 32 H 0.03 0.87 8.09 -51.93 -0.42 0.45 16 33 H 0.03 0.86 8.09 -51.93 -0.42 0.44 16 34 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 35 H 0.13 2.23 8.06 -52.49 -0.42 1.81 16 36 H 0.13 1.80 7.62 -52.49 -0.40 1.40 16 37 H 0.09 1.15 4.17 -51.93 -0.22 0.93 16 38 H 0.08 0.81 7.08 -51.93 -0.37 0.44 16 39 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 41 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 42 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.08 0.52 7.85 -51.93 -0.41 0.11 16 44 H 0.07 0.46 7.73 -51.93 -0.40 0.06 16 LS Contribution 356.29 15.07 5.37 5.37 Total: -1.00 -31.66 356.29 -10.91 -42.57 By element: Atomic # 1 Polarization: 9.72 SS G_CDS: -6.51 Total: 3.22 kcal Atomic # 6 Polarization: -32.27 SS G_CDS: -3.10 Total: -35.38 kcal Atomic # 7 Polarization: -36.66 SS G_CDS: 0.74 Total: -35.91 kcal Atomic # 8 Polarization: -30.68 SS G_CDS: -1.78 Total: -32.47 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Atomic # 16 Polarization: 37.17 SS G_CDS: -0.61 Total: 36.56 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -31.66 -10.91 -42.57 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884977445.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.210 kcal (2) G-P(sol) polarization free energy of solvation -31.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds