Wall clock time and date at job start Tue Mar 31 2020 14:29:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.99680 * 2 1 4 4 C 1.54320 * 109.88028 * 238.90292 * 2 1 3 5 5 C 1.55158 * 102.94421 * 262.77452 * 4 2 1 6 6 C 1.55136 * 101.48495 * 324.33362 * 5 4 2 7 7 N 1.47026 * 109.88394 * 121.09514 * 2 1 3 8 8 S 1.65596 * 125.64563 * 300.44181 * 7 2 1 9 9 O 1.42102 * 106.40754 * 336.45844 * 8 7 2 10 10 O 1.42109 * 106.39910 * 203.53886 * 8 7 2 11 11 C 1.76199 * 107.22174 * 89.99927 * 8 7 2 12 12 C 1.38238 * 119.99900 * 89.99763 * 11 8 7 13 13 C 1.38235 * 120.00108 * 180.02562 * 12 11 8 14 14 C 1.38243 * 119.99617 * 0.02562 * 13 12 11 15 15 C 1.50706 * 119.99586 * 179.97438 * 14 13 12 16 16 C 1.50703 * 109.47001 * 89.99822 * 15 14 13 17 17 H 1.08005 * 119.99817 * 359.97438 * 16 15 14 18 18 C 1.37871 * 120.00081 * 179.97438 * 16 15 14 19 19 N 1.31520 * 119.99848 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 120.00321 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.46938 * 0.02562 * 20 18 16 22 22 H 1.48501 * 109.47198 * 120.00527 * 20 18 16 23 23 H 1.48498 * 109.47360 * 240.00281 * 20 18 16 24 24 C 1.38233 * 120.00248 * 0.25361 * 14 13 12 25 25 C 1.38234 * 120.00018 * 269.97659 * 11 8 7 26 26 H 1.09005 * 109.47086 * 298.90415 * 1 2 3 27 27 H 1.08991 * 109.47605 * 58.90297 * 1 2 3 28 28 H 1.09000 * 109.47072 * 178.90729 * 1 2 3 29 29 H 1.09001 * 109.46786 * 181.09377 * 3 2 1 30 30 H 1.08997 * 109.46955 * 301.09563 * 3 2 1 31 31 H 1.09004 * 109.47425 * 61.09770 * 3 2 1 32 32 H 1.08999 * 110.72460 * 21.13692 * 4 2 1 33 33 H 1.09000 * 110.71981 * 144.23587 * 4 2 1 34 34 H 1.08996 * 111.00414 * 82.57296 * 5 4 2 35 35 H 1.08994 * 111.00473 * 206.38821 * 5 4 2 36 36 H 1.08996 * 110.49812 * 278.45577 * 6 5 4 37 37 H 1.09003 * 110.33910 * 156.05688 * 6 5 4 38 38 H 1.08000 * 120.00578 * 359.97438 * 12 11 8 39 39 H 1.07999 * 120.00165 * 179.97438 * 13 12 11 40 40 H 1.09000 * 109.46646 * 209.99280 * 15 14 13 41 41 H 1.09000 * 109.47248 * 329.99998 * 15 14 13 42 42 H 0.96998 * 119.99944 * 179.97438 * 19 18 16 43 43 H 1.08004 * 119.99934 * 179.72684 * 24 14 13 44 44 H 1.07999 * 120.00024 * 0.02562 * 25 11 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0532 1.4377 0.0000 4 6 2.0548 -0.7495 -1.2427 5 6 2.3518 -2.1695 -0.6924 6 6 2.8613 -1.8465 0.7369 7 7 2.0301 -0.7141 1.1839 8 16 1.7171 -0.3090 2.7588 9 8 1.3903 1.0739 2.7603 10 8 2.7752 -0.8584 3.5322 11 6 0.2541 -1.1665 3.2371 12 6 0.3434 -2.4284 3.7945 13 6 -0.8044 -3.1013 4.1693 14 6 -2.0417 -2.5126 3.9862 15 6 -3.2931 -3.2465 4.3943 16 6 -3.6269 -2.9131 5.8256 17 1 -2.9956 -2.2376 6.3840 18 6 -4.7379 -3.4702 6.4222 19 7 -5.5063 -4.2931 5.7423 20 14 -5.1513 -3.0576 8.1965 21 1 -4.1371 -2.1158 8.7348 22 1 -6.4941 -2.4266 8.2581 23 1 -5.1514 -4.3019 9.0070 24 6 -2.1314 -1.2531 3.4235 25 6 -0.9831 -0.5772 3.0554 26 1 -0.3633 0.4967 0.8997 27 1 -0.3634 0.5307 -0.8799 28 1 -0.3633 -1.0275 -0.0196 29 1 3.1430 1.4277 -0.0196 30 1 1.6787 1.9606 -0.8800 31 1 1.7107 1.9491 0.8997 32 1 1.2917 -0.7891 -2.0200 33 1 2.9639 -0.2813 -1.6201 34 1 1.4452 -2.7737 -0.6603 35 1 3.1265 -2.6621 -1.2800 36 1 3.9123 -1.5588 0.7115 37 1 2.7178 -2.7049 1.3933 38 1 1.3100 -2.8889 3.9365 39 1 -0.7346 -4.0873 4.6044 40 1 -4.1181 -2.9445 3.7490 41 1 -3.1319 -4.3203 4.2995 42 1 -6.2878 -4.6854 6.1621 43 1 -3.0984 -0.7950 3.2764 44 1 -1.0529 0.4086 2.6199 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000884998751.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:29:54 Heat of formation + Delta-G solvation = -59.952259 kcal Electronic energy + Delta-G solvation = -25934.209422 eV Core-core repulsion = 22363.842223 eV Total energy + Delta-G solvation = -3570.367199 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.44795 -38.79712 -37.18455 -35.74879 -33.68914 -32.57858 -31.57166 -31.16315 -30.59077 -27.63075 -27.24229 -25.53845 -23.72175 -22.39601 -22.06029 -20.97906 -20.73615 -18.59273 -17.59383 -16.97550 -16.47059 -16.35736 -15.47449 -15.08053 -14.57937 -14.41381 -14.26799 -14.10442 -13.90923 -13.65068 -13.46166 -13.20422 -13.04503 -12.84406 -12.40580 -12.18606 -12.16421 -11.93558 -11.86358 -11.70581 -11.66780 -11.52318 -11.47447 -11.23821 -10.94891 -10.93536 -10.87177 -10.63837 -10.49702 -10.46175 -9.73877 -9.65783 -9.15879 -8.58479 -8.54441 -8.36709 -6.17871 -4.22772 0.46410 1.34364 1.79697 3.01370 3.22767 3.30851 3.36283 3.80254 4.08136 4.13338 4.28875 4.37771 4.58708 4.64871 4.90761 4.96419 5.08359 5.15979 5.20422 5.22283 5.23429 5.45011 5.49225 5.54363 5.58241 5.61831 5.70982 5.74182 5.78481 5.83001 5.91203 5.93744 6.01715 6.18071 6.25255 6.30113 6.33719 6.39568 6.54334 6.83923 6.90500 7.28914 7.43082 7.58566 7.77523 8.12745 8.82317 9.42344 10.92200 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.022782 B = 0.003247 C = 0.003169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1228.769028 B = 8621.086370 C = 8832.338597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.177 3.823 3 C -0.179 4.179 4 C -0.119 4.119 5 C -0.131 4.131 6 C 0.122 3.878 7 N -1.004 6.004 8 S 2.708 3.292 9 O -0.958 6.958 10 O -0.963 6.963 11 C -0.703 4.703 12 C -0.023 4.023 13 C -0.145 4.145 14 C 0.026 3.974 15 C 0.039 3.961 16 C -0.517 4.517 17 H 0.059 0.941 18 C 0.061 3.939 19 N -0.891 5.891 20 Si 0.898 3.102 21 H -0.271 1.271 22 H -0.282 1.282 23 H -0.282 1.282 24 C -0.145 4.145 25 C -0.022 4.022 26 H 0.065 0.935 27 H 0.072 0.928 28 H 0.067 0.933 29 H 0.057 0.943 30 H 0.066 0.934 31 H 0.089 0.911 32 H 0.080 0.920 33 H 0.076 0.924 34 H 0.078 0.922 35 H 0.080 0.920 36 H 0.070 0.930 37 H 0.076 0.924 38 H 0.127 0.873 39 H 0.128 0.872 40 H 0.035 0.965 41 H 0.035 0.965 42 H 0.263 0.737 43 H 0.128 0.872 44 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.157 5.962 -15.836 22.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.090 3.910 3 C -0.237 4.237 4 C -0.158 4.158 5 C -0.170 4.170 6 C -0.003 4.003 7 N -0.842 5.842 8 S 2.803 3.197 9 O -0.949 6.949 10 O -0.954 6.954 11 C -0.792 4.792 12 C -0.043 4.043 13 C -0.164 4.164 14 C 0.026 3.974 15 C 0.002 3.998 16 C -0.555 4.555 17 H 0.078 0.922 18 C -0.142 4.142 19 N -0.530 5.530 20 Si 0.725 3.275 21 H -0.196 1.196 22 H -0.208 1.208 23 H -0.208 1.208 24 C -0.164 4.164 25 C -0.041 4.041 26 H 0.084 0.916 27 H 0.091 0.909 28 H 0.086 0.914 29 H 0.076 0.924 30 H 0.085 0.915 31 H 0.108 0.892 32 H 0.099 0.901 33 H 0.094 0.906 34 H 0.096 0.904 35 H 0.099 0.901 36 H 0.088 0.912 37 H 0.094 0.906 38 H 0.145 0.855 39 H 0.146 0.854 40 H 0.053 0.947 41 H 0.053 0.947 42 H 0.073 0.927 43 H 0.146 0.854 44 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 15.504 6.444 -15.208 22.653 hybrid contribution -1.033 -0.387 1.004 1.492 sum 14.471 6.057 -14.204 21.163 Atomic orbital electron populations 1.22473 0.94257 1.03178 1.03423 1.20696 0.93714 0.91961 0.84582 1.22537 1.01410 0.95311 1.04485 1.22728 1.01649 0.95239 0.96181 1.22823 1.01966 0.96964 0.95237 1.22008 0.94374 0.88067 0.95875 1.58798 1.62782 1.40900 1.21686 1.01274 0.73830 0.73567 0.70981 1.93507 1.85344 1.30377 1.85666 1.93549 1.53956 1.80365 1.67534 1.30402 1.17587 1.10160 1.21085 1.20751 0.99007 0.91771 0.92774 1.21234 0.91910 1.01109 1.02154 1.21106 0.97203 0.93095 0.86004 1.18542 0.88609 0.95477 0.97127 1.21014 1.10277 1.28286 0.95905 0.92233 1.25003 0.95952 0.94815 0.98382 1.69958 1.15774 1.30384 1.36873 0.86428 0.78404 0.78364 0.84255 1.19563 1.20790 1.20788 1.21234 0.98234 0.95549 1.01416 1.20780 0.91180 0.97918 0.94270 0.91611 0.90894 0.91373 0.92360 0.91489 0.89209 0.90127 0.90551 0.90372 0.90110 0.91213 0.90605 0.85468 0.85383 0.94723 0.94729 0.92690 0.85395 0.85309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.73 8.26 37.16 0.31 -1.42 16 2 C 0.18 1.72 0.89 -130.84 -0.12 1.60 16 3 C -0.18 -1.74 8.40 37.16 0.31 -1.42 16 4 C -0.12 -0.84 6.02 -24.90 -0.15 -0.99 16 5 C -0.13 -0.92 7.10 -24.46 -0.17 -1.10 16 6 C 0.12 1.12 6.99 -2.41 -0.02 1.10 16 7 N -1.00 -11.48 3.11 -97.58 -0.30 -11.78 16 8 S 2.71 40.34 5.38 -107.50 -0.58 39.76 16 9 O -0.96 -15.60 14.02 -57.17 -0.80 -16.40 16 10 O -0.96 -16.50 16.87 -57.17 -0.96 -17.46 16 11 C -0.70 -11.44 5.97 -39.58 -0.24 -11.68 16 12 C -0.02 -0.39 9.52 -39.58 -0.38 -0.77 16 13 C -0.15 -2.73 9.70 -39.58 -0.38 -3.11 16 14 C 0.03 0.55 5.07 -104.62 -0.53 0.02 16 15 C 0.04 0.96 5.11 -29.03 -0.15 0.81 16 16 C -0.52 -14.07 9.09 -34.44 -0.31 -14.38 16 17 H 0.06 1.63 7.74 -52.48 -0.41 1.22 16 18 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 19 N -0.89 -25.54 13.29 55.43 0.74 -24.80 16 20 Si 0.90 21.17 29.54 -169.99 -5.02 16.15 16 21 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 22 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 23 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 24 C -0.15 -2.71 9.70 -39.58 -0.38 -3.10 16 25 C -0.02 -0.37 8.47 -39.58 -0.34 -0.70 16 26 H 0.07 0.74 4.88 -51.93 -0.25 0.48 16 27 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.06 0.53 8.13 -51.93 -0.42 0.10 16 30 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.09 1.08 5.72 -51.93 -0.30 0.78 16 32 H 0.08 0.48 7.83 -51.93 -0.41 0.08 16 33 H 0.08 0.47 7.84 -51.93 -0.41 0.06 16 34 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 35 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.13 1.85 7.62 -52.49 -0.40 1.45 16 39 H 0.13 2.28 8.06 -52.49 -0.42 1.85 16 40 H 0.03 0.88 8.08 -51.93 -0.42 0.46 16 41 H 0.03 0.88 8.09 -51.93 -0.42 0.46 16 42 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 43 H 0.13 2.26 8.06 -52.48 -0.42 1.84 16 44 H 0.13 1.85 6.08 -52.49 -0.32 1.53 16 LS Contribution 362.69 15.07 5.47 5.47 Total: -1.00 -31.94 362.69 -10.80 -42.74 By element: Atomic # 1 Polarization: 6.58 SS G_CDS: -6.69 Total: -0.11 kcal Atomic # 6 Polarization: -30.92 SS G_CDS: -2.64 Total: -33.56 kcal Atomic # 7 Polarization: -37.02 SS G_CDS: 0.43 Total: -36.58 kcal Atomic # 8 Polarization: -32.10 SS G_CDS: -1.77 Total: -33.87 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Atomic # 16 Polarization: 40.34 SS G_CDS: -0.58 Total: 39.76 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -31.94 -10.80 -42.74 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884998751.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.214 kcal (2) G-P(sol) polarization free energy of solvation -31.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.738 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds