Wall clock time and date at job start Tue Mar 31 2020 14:29:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.99680 * 2 1 4 4 C 1.54320 * 109.88028 * 238.90292 * 2 1 3 5 5 C 1.55158 * 102.94421 * 262.77452 * 4 2 1 6 6 C 1.55136 * 101.48495 * 324.33362 * 5 4 2 7 7 N 1.47026 * 109.88394 * 121.09514 * 2 1 3 8 8 S 1.65596 * 125.64563 * 300.44181 * 7 2 1 9 9 O 1.42102 * 106.40754 * 336.45844 * 8 7 2 10 10 O 1.42109 * 106.39910 * 203.53886 * 8 7 2 11 11 C 1.76199 * 107.22174 * 89.99927 * 8 7 2 12 12 C 1.38238 * 119.99900 * 89.99763 * 11 8 7 13 13 C 1.38235 * 120.00108 * 180.02562 * 12 11 8 14 14 C 1.38243 * 119.99617 * 0.02562 * 13 12 11 15 15 C 1.50706 * 119.99586 * 179.97438 * 14 13 12 16 16 C 1.50703 * 109.47001 * 89.99822 * 15 14 13 17 17 H 1.08005 * 119.99817 * 359.97438 * 16 15 14 18 18 C 1.37871 * 120.00081 * 179.97438 * 16 15 14 19 19 N 1.31520 * 119.99848 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 120.00321 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.46938 * 0.02562 * 20 18 16 22 22 H 1.48501 * 109.47198 * 120.00527 * 20 18 16 23 23 H 1.48498 * 109.47360 * 240.00281 * 20 18 16 24 24 C 1.38233 * 120.00248 * 0.25361 * 14 13 12 25 25 C 1.38234 * 120.00018 * 269.97659 * 11 8 7 26 26 H 1.09005 * 109.47086 * 298.90415 * 1 2 3 27 27 H 1.08991 * 109.47605 * 58.90297 * 1 2 3 28 28 H 1.09000 * 109.47072 * 178.90729 * 1 2 3 29 29 H 1.09001 * 109.46786 * 181.09377 * 3 2 1 30 30 H 1.08997 * 109.46955 * 301.09563 * 3 2 1 31 31 H 1.09004 * 109.47425 * 61.09770 * 3 2 1 32 32 H 1.08999 * 110.72460 * 21.13692 * 4 2 1 33 33 H 1.09000 * 110.71981 * 144.23587 * 4 2 1 34 34 H 1.08996 * 111.00414 * 82.57296 * 5 4 2 35 35 H 1.08994 * 111.00473 * 206.38821 * 5 4 2 36 36 H 1.08996 * 110.49812 * 278.45577 * 6 5 4 37 37 H 1.09003 * 110.33910 * 156.05688 * 6 5 4 38 38 H 1.08000 * 120.00578 * 359.97438 * 12 11 8 39 39 H 1.07999 * 120.00165 * 179.97438 * 13 12 11 40 40 H 1.09000 * 109.46646 * 209.99280 * 15 14 13 41 41 H 1.09000 * 109.47248 * 329.99998 * 15 14 13 42 42 H 0.96998 * 119.99944 * 179.97438 * 19 18 16 43 43 H 1.08004 * 119.99934 * 179.72684 * 24 14 13 44 44 H 1.07999 * 120.00024 * 0.02562 * 25 11 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0532 1.4377 0.0000 4 6 2.0548 -0.7495 -1.2427 5 6 2.3518 -2.1695 -0.6924 6 6 2.8613 -1.8465 0.7369 7 7 2.0301 -0.7141 1.1839 8 16 1.7171 -0.3090 2.7588 9 8 1.3903 1.0739 2.7603 10 8 2.7752 -0.8584 3.5322 11 6 0.2541 -1.1665 3.2371 12 6 0.3434 -2.4284 3.7945 13 6 -0.8044 -3.1013 4.1693 14 6 -2.0417 -2.5126 3.9862 15 6 -3.2931 -3.2465 4.3943 16 6 -3.6269 -2.9131 5.8256 17 1 -2.9956 -2.2376 6.3840 18 6 -4.7379 -3.4702 6.4222 19 7 -5.5063 -4.2931 5.7423 20 14 -5.1513 -3.0576 8.1965 21 1 -4.1371 -2.1158 8.7348 22 1 -6.4941 -2.4266 8.2581 23 1 -5.1514 -4.3019 9.0070 24 6 -2.1314 -1.2531 3.4235 25 6 -0.9831 -0.5772 3.0554 26 1 -0.3633 0.4967 0.8997 27 1 -0.3634 0.5307 -0.8799 28 1 -0.3633 -1.0275 -0.0196 29 1 3.1430 1.4277 -0.0196 30 1 1.6787 1.9606 -0.8800 31 1 1.7107 1.9491 0.8997 32 1 1.2917 -0.7891 -2.0200 33 1 2.9639 -0.2813 -1.6201 34 1 1.4452 -2.7737 -0.6603 35 1 3.1265 -2.6621 -1.2800 36 1 3.9123 -1.5588 0.7115 37 1 2.7178 -2.7049 1.3933 38 1 1.3100 -2.8889 3.9365 39 1 -0.7346 -4.0873 4.6044 40 1 -4.1181 -2.9445 3.7490 41 1 -3.1319 -4.3203 4.2995 42 1 -6.2878 -4.6854 6.1621 43 1 -3.0984 -0.7950 3.2764 44 1 -1.0529 0.4086 2.6199 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000884998751.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:29:53 Heat of formation + Delta-G solvation = -78.726396 kcal Electronic energy + Delta-G solvation = -25935.023529 eV Core-core repulsion = 22363.842223 eV Total energy + Delta-G solvation = -3571.181306 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.30866 -40.13075 -38.42824 -37.01149 -35.62041 -33.39095 -33.27157 -32.00681 -31.89844 -29.29897 -28.16229 -26.21642 -25.60109 -23.78210 -22.86248 -22.41470 -21.65044 -19.78243 -18.81661 -18.56709 -17.93115 -17.27694 -16.87885 -16.54344 -16.02056 -15.84966 -15.33305 -15.17155 -14.91173 -14.64599 -14.57890 -14.39429 -14.08962 -13.98125 -13.85538 -13.44322 -13.40657 -13.32270 -13.19389 -12.97083 -12.74975 -12.68643 -12.67660 -12.48206 -12.29056 -12.14875 -12.05021 -11.88123 -11.66793 -11.48310 -11.40129 -11.33138 -10.67016 -10.10418 -9.99076 -9.89523 -8.28565 -6.41293 -0.71229 -0.08859 0.36410 1.36243 1.37775 1.50480 1.93229 2.33764 2.55323 2.76755 3.04096 3.12324 3.56468 3.75424 3.85404 3.91115 4.00954 4.12825 4.23367 4.29737 4.41934 4.43881 4.49597 4.53683 4.73977 4.78235 4.83451 4.86209 4.90302 4.99457 5.04348 5.08436 5.11249 5.13700 5.21669 5.24339 5.28103 5.29710 5.33704 5.51064 5.53703 5.63653 5.65784 5.83404 5.89354 6.08188 6.70483 7.27938 8.81715 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.022782 B = 0.003247 C = 0.003169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1228.769028 B = 8621.086370 C = 8832.338597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.169 3.831 3 C -0.181 4.181 4 C -0.112 4.112 5 C -0.125 4.125 6 C 0.108 3.892 7 N -1.000 6.000 8 S 2.725 3.275 9 O -0.973 6.973 10 O -0.985 6.985 11 C -0.701 4.701 12 C -0.021 4.021 13 C -0.153 4.153 14 C -0.002 4.002 15 C 0.049 3.951 16 C -0.534 4.534 17 H 0.053 0.947 18 C 0.011 3.989 19 N -0.924 5.924 20 Si 0.964 3.036 21 H -0.269 1.269 22 H -0.274 1.274 23 H -0.274 1.274 24 C -0.153 4.153 25 C -0.016 4.016 26 H 0.048 0.952 27 H 0.094 0.906 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.088 0.912 31 H 0.063 0.937 32 H 0.096 0.904 33 H 0.091 0.909 34 H 0.073 0.927 35 H 0.105 0.895 36 H 0.082 0.918 37 H 0.074 0.926 38 H 0.151 0.849 39 H 0.131 0.869 40 H 0.014 0.986 41 H 0.014 0.986 42 H 0.268 0.732 43 H 0.130 0.870 44 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.832 6.772 -17.118 24.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.083 3.917 3 C -0.239 4.239 4 C -0.151 4.151 5 C -0.164 4.164 6 C -0.017 4.017 7 N -0.840 5.840 8 S 2.819 3.181 9 O -0.963 6.963 10 O -0.976 6.976 11 C -0.788 4.788 12 C -0.040 4.040 13 C -0.172 4.172 14 C -0.002 4.002 15 C 0.012 3.988 16 C -0.572 4.572 17 H 0.071 0.929 18 C -0.189 4.189 19 N -0.564 5.564 20 Si 0.789 3.211 21 H -0.193 1.193 22 H -0.200 1.200 23 H -0.200 1.200 24 C -0.172 4.172 25 C -0.035 4.035 26 H 0.067 0.933 27 H 0.113 0.887 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.107 0.893 31 H 0.082 0.918 32 H 0.114 0.886 33 H 0.110 0.890 34 H 0.091 0.909 35 H 0.123 0.877 36 H 0.100 0.900 37 H 0.093 0.907 38 H 0.169 0.831 39 H 0.149 0.851 40 H 0.033 0.967 41 H 0.032 0.968 42 H 0.077 0.923 43 H 0.148 0.852 44 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 17.163 7.245 -16.481 24.873 hybrid contribution -1.453 -0.595 1.278 2.024 sum 15.711 6.649 -15.203 22.851 Atomic orbital electron populations 1.22532 0.94619 1.03001 1.03641 1.20977 0.93597 0.92258 0.84909 1.22546 1.01858 0.95241 1.04251 1.22751 1.02702 0.94646 0.95013 1.22830 1.02460 0.97136 0.93931 1.22342 0.94784 0.87280 0.97264 1.58590 1.62736 1.41911 1.20776 1.00698 0.72863 0.72892 0.71668 1.93495 1.85338 1.31125 1.86355 1.93518 1.54263 1.80669 1.69120 1.30862 1.18475 1.09832 1.19631 1.20980 0.99232 0.91882 0.91912 1.21292 0.91914 1.01500 1.02484 1.20819 0.96329 0.94233 0.88867 1.18267 0.90015 0.94663 0.95874 1.21314 1.10416 1.28146 0.97307 0.92913 1.25851 0.95790 0.94592 1.02618 1.70060 1.16308 1.31311 1.38707 0.85409 0.78268 0.78329 0.79141 1.19314 1.19972 1.19979 1.21289 0.99316 0.95024 1.01536 1.20981 0.90511 0.98581 0.93427 0.93321 0.88742 0.91805 0.91762 0.89312 0.91759 0.88596 0.89027 0.90852 0.87703 0.89977 0.90709 0.83118 0.85149 0.96734 0.96762 0.92346 0.85162 0.83105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.19 8.26 71.98 0.59 -2.59 16 2 C 0.17 2.84 0.89 3.95 0.00 2.84 16 3 C -0.18 -3.07 8.40 71.98 0.60 -2.47 16 4 C -0.11 -1.17 6.02 31.78 0.19 -0.98 16 5 C -0.12 -1.34 7.10 32.07 0.23 -1.12 16 6 C 0.11 1.70 6.99 86.94 0.61 2.31 16 7 N -1.00 -20.86 3.11 -462.63 -1.44 -22.30 16 8 S 2.73 77.79 5.38 -56.49 -0.30 77.48 16 9 O -0.97 -30.71 14.02 -128.00 -1.79 -32.51 16 10 O -0.99 -32.47 16.87 -128.00 -2.16 -34.63 16 11 C -0.70 -22.23 5.97 22.27 0.13 -22.10 16 12 C -0.02 -0.69 9.52 22.27 0.21 -0.48 16 13 C -0.15 -5.84 9.70 22.27 0.22 -5.63 16 14 C 0.00 -0.09 5.07 -19.86 -0.10 -0.19 16 15 C 0.05 2.51 5.11 29.10 0.15 2.66 16 16 C -0.53 -29.96 9.09 25.60 0.23 -29.72 16 17 H 0.05 2.96 7.74 -2.91 -0.02 2.94 16 18 C 0.01 0.59 5.46 84.65 0.46 1.05 16 19 N -0.92 -54.18 13.29 21.45 0.28 -53.89 16 20 Si 0.96 43.82 29.54 68.60 2.03 45.85 16 21 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 22 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 23 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 24 C -0.15 -5.81 9.70 22.27 0.22 -5.59 16 25 C -0.02 -0.52 8.47 22.27 0.19 -0.33 16 26 H 0.05 1.02 4.88 -2.38 -0.01 1.01 16 27 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 28 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 29 H 0.06 1.00 8.13 -2.39 -0.02 0.98 16 30 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.06 1.45 5.72 -2.39 -0.01 1.44 16 32 H 0.10 0.76 7.83 -2.39 -0.02 0.74 16 33 H 0.09 0.72 7.84 -2.39 -0.02 0.70 16 34 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 35 H 0.10 0.67 8.14 -2.39 -0.02 0.65 16 36 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 37 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 38 H 0.15 4.18 7.62 -2.91 -0.02 4.16 16 39 H 0.13 4.78 8.06 -2.91 -0.02 4.75 16 40 H 0.01 0.78 8.08 -2.39 -0.02 0.76 16 41 H 0.01 0.77 8.09 -2.39 -0.02 0.75 16 42 H 0.27 14.66 8.31 -92.71 -0.77 13.88 16 43 H 0.13 4.75 8.06 -2.91 -0.02 4.73 16 44 H 0.15 4.20 6.08 -2.91 -0.02 4.19 16 Total: -1.00 -69.62 362.69 1.53 -68.09 By element: Atomic # 1 Polarization: 13.25 SS G_CDS: 0.98 Total: 14.23 kcal Atomic # 6 Polarization: -66.26 SS G_CDS: 3.94 Total: -62.32 kcal Atomic # 7 Polarization: -75.04 SS G_CDS: -1.16 Total: -76.19 kcal Atomic # 8 Polarization: -63.18 SS G_CDS: -3.95 Total: -67.14 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 2.03 Total: 45.85 kcal Atomic # 16 Polarization: 77.79 SS G_CDS: -0.30 Total: 77.48 kcal Total: -69.62 1.53 -68.09 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884998751.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.638 kcal (2) G-P(sol) polarization free energy of solvation -69.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.088 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds