Wall clock time and date at job start Tue Mar 31 2020 14:36:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52994 * 115.55106 * 2 1 4 4 C 1.52997 * 117.49753 * 214.28946 * 2 1 3 5 5 C 1.53002 * 60.00204 * 252.51055 * 4 2 1 6 6 H 1.08998 * 117.51765 * 252.51840 * 5 4 2 7 7 C 1.53004 * 117.49341 * 107.48586 * 5 4 2 8 8 N 1.46506 * 109.46578 * 116.38212 * 7 5 4 9 9 S 1.65603 * 119.99824 * 164.99485 * 8 7 5 10 10 O 1.42094 * 106.40226 * 311.46394 * 9 8 7 11 11 O 1.42101 * 106.40228 * 178.53696 * 9 8 7 12 12 C 1.76205 * 107.21426 * 64.99878 * 9 8 7 13 13 C 1.38228 * 120.00116 * 270.20933 * 12 9 8 14 14 C 1.38238 * 120.00114 * 180.26456 * 13 12 9 15 15 C 1.38234 * 119.99675 * 359.50218 * 14 13 12 16 16 C 1.50702 * 120.00257 * 180.25732 * 15 14 13 17 17 C 1.50701 * 109.46833 * 89.99861 * 16 15 14 18 18 H 1.08001 * 120.00342 * 0.02562 * 17 16 15 19 19 C 1.37882 * 120.00009 * 179.97438 * 17 16 15 20 20 N 1.31507 * 119.99884 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00069 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47135 * 90.00375 * 21 19 17 23 23 H 1.48494 * 109.47213 * 210.00628 * 21 19 17 24 24 H 1.48507 * 109.47029 * 330.00073 * 21 19 17 25 25 C 1.38235 * 120.00220 * 0.28720 * 15 14 13 26 26 C 1.38234 * 119.99800 * 89.99999 * 12 9 8 27 27 H 1.08999 * 109.47106 * 274.33785 * 1 2 3 28 28 H 1.09003 * 109.46930 * 34.33012 * 1 2 3 29 29 H 1.08991 * 109.47670 * 154.32945 * 1 2 3 30 30 H 1.09004 * 109.46990 * 205.66805 * 3 2 1 31 31 H 1.09001 * 109.47661 * 325.66758 * 3 2 1 32 32 H 1.09006 * 109.47582 * 85.67103 * 3 2 1 33 33 H 1.09000 * 117.50167 * 145.02162 * 4 2 1 34 34 H 1.08999 * 117.50118 * 0.02562 * 4 2 1 35 35 H 1.08997 * 109.47284 * 356.38511 * 7 5 4 36 36 H 1.09000 * 109.46710 * 236.37804 * 7 5 4 37 37 H 0.96998 * 120.00049 * 344.99974 * 8 7 5 38 38 H 1.08004 * 120.00270 * 0.03858 * 13 12 9 39 39 H 1.08002 * 120.00519 * 179.78838 * 14 13 12 40 40 H 1.08993 * 109.47429 * 210.00613 * 16 15 14 41 41 H 1.08998 * 109.46961 * 330.00864 * 16 15 14 42 42 H 0.96998 * 119.99939 * 179.97438 * 20 19 17 43 43 H 1.07996 * 120.00471 * 179.97438 * 25 15 14 44 44 H 1.08001 * 120.00294 * 359.97438 * 26 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1899 1.3803 0.0000 4 6 2.2364 -1.1213 -0.7646 5 6 2.2364 -1.1207 0.7654 6 1 3.1713 -0.8747 1.2689 7 6 1.3587 -2.1557 1.4722 8 7 2.2057 -3.0699 2.2423 9 16 1.5319 -4.0510 3.3938 10 8 0.6986 -3.2205 4.1907 11 8 2.5935 -4.8293 3.9290 12 6 0.4620 -5.1754 2.5597 13 6 -0.8642 -4.8441 2.3541 14 6 -1.7049 -5.7286 1.7046 15 6 -1.2168 -6.9400 1.2516 16 6 -2.1319 -7.9019 0.5384 17 6 -2.0995 -7.6218 -0.9420 18 1 -1.4782 -6.8271 -1.3279 19 6 -2.8624 -8.3808 -1.8041 20 7 -3.6185 -9.3488 -1.3344 21 14 -2.8217 -8.0341 -3.6392 22 1 -1.7492 -8.8430 -4.2721 23 1 -4.1317 -8.3924 -4.2397 24 1 -2.5520 -6.5912 -3.8645 25 6 0.1104 -7.2695 1.4534 26 6 0.9499 -6.3870 2.1072 27 1 -0.3633 0.0777 1.0247 28 1 -0.3633 0.8487 -0.5796 29 1 -0.3634 -0.9261 -0.4451 30 1 3.1823 1.3086 -0.4452 31 1 1.5810 2.0742 -0.5796 32 1 2.2766 1.7417 1.0248 33 1 3.1715 -0.8757 -1.2680 34 1 1.6112 -1.8587 -1.2679 35 1 0.7946 -2.7210 0.7304 36 1 0.6675 -1.6474 2.1445 37 1 3.1611 -3.1005 2.0778 38 1 -1.2445 -3.8958 2.7042 39 1 -2.7419 -5.4713 1.5469 40 1 -1.7997 -8.9235 0.7223 41 1 -3.1493 -7.7782 0.9093 42 1 -4.1555 -9.8825 -1.9408 43 1 0.4917 -8.2160 1.0998 44 1 1.9870 -6.6443 2.2645 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885010946.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:36:40 Heat of formation + Delta-G solvation = -47.982988 kcal Electronic energy + Delta-G solvation = -24840.378712 eV Core-core repulsion = 21270.530539 eV Total energy + Delta-G solvation = -3569.848172 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.14380 -38.80471 -37.13136 -35.76672 -34.82919 -33.69439 -31.57369 -30.58462 -29.64894 -27.95714 -27.44499 -26.05635 -23.74542 -22.36680 -21.51499 -20.90724 -19.68027 -18.88752 -17.77344 -17.18252 -16.58266 -16.47273 -15.37740 -15.15729 -14.73543 -14.58046 -14.44576 -14.37908 -13.96765 -13.91840 -13.72266 -13.11668 -12.88650 -12.76732 -12.53223 -12.33439 -12.20878 -12.06889 -12.02307 -11.93217 -11.78482 -11.58865 -11.50371 -11.29874 -10.95457 -10.92759 -10.59489 -10.49763 -10.32098 -9.86581 -9.81213 -9.66803 -9.45603 -8.60312 -8.56076 -8.39486 -6.19406 -4.24723 0.51521 1.32382 1.78711 3.03221 3.20967 3.27840 3.30637 3.44624 3.76410 4.11388 4.24839 4.34480 4.46060 4.49143 4.59632 4.79869 4.87973 5.14237 5.17388 5.21003 5.23104 5.35404 5.38451 5.49568 5.59777 5.60508 5.65744 5.70645 5.71388 5.75051 5.83670 5.90056 5.90445 5.98419 6.08701 6.24074 6.32245 6.49983 6.82710 6.85359 6.90446 7.28295 7.42333 7.58108 7.75093 8.10773 8.79763 9.40035 10.90712 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.010545 B = 0.003745 C = 0.002976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2654.648798 B = 7475.672513 C = 9406.688631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.121 4.121 3 C -0.115 4.115 4 C -0.169 4.169 5 C -0.154 4.154 6 H 0.111 0.889 7 C 0.147 3.853 8 N -1.117 6.117 9 S 2.699 3.301 10 O -0.965 6.965 11 O -0.967 6.967 12 C -0.704 4.704 13 C -0.025 4.025 14 C -0.145 4.145 15 C 0.027 3.973 16 C 0.038 3.962 17 C -0.517 4.517 18 H 0.058 0.942 19 C 0.061 3.939 20 N -0.891 5.891 21 Si 0.899 3.101 22 H -0.279 1.279 23 H -0.284 1.284 24 H -0.273 1.273 25 C -0.146 4.146 26 C -0.021 4.021 27 H 0.063 0.937 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.056 0.944 31 H 0.061 0.939 32 H 0.060 0.940 33 H 0.094 0.906 34 H 0.099 0.901 35 H 0.070 0.930 36 H 0.084 0.916 37 H 0.416 0.584 38 H 0.129 0.871 39 H 0.129 0.871 40 H 0.035 0.965 41 H 0.035 0.965 42 H 0.264 0.736 43 H 0.129 0.871 44 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.145 17.309 3.681 20.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.122 4.122 3 C -0.172 4.172 4 C -0.206 4.206 5 C -0.174 4.174 6 H 0.129 0.871 7 C 0.021 3.979 8 N -0.877 5.877 9 S 2.792 3.208 10 O -0.955 6.955 11 O -0.958 6.958 12 C -0.794 4.794 13 C -0.045 4.045 14 C -0.164 4.164 15 C 0.026 3.974 16 C 0.002 3.998 17 C -0.555 4.555 18 H 0.077 0.923 19 C -0.142 4.142 20 N -0.529 5.529 21 Si 0.726 3.274 22 H -0.205 1.205 23 H -0.210 1.210 24 H -0.198 1.198 25 C -0.165 4.165 26 C -0.041 4.041 27 H 0.082 0.918 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.075 0.925 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.113 0.887 34 H 0.118 0.882 35 H 0.089 0.911 36 H 0.102 0.898 37 H 0.251 0.749 38 H 0.147 0.853 39 H 0.147 0.853 40 H 0.053 0.947 41 H 0.053 0.947 42 H 0.074 0.926 43 H 0.146 0.854 44 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 10.968 17.233 4.569 20.932 hybrid contribution 0.043 -0.359 -1.832 1.868 sum 11.011 16.874 2.737 20.334 Atomic orbital electron populations 1.21427 0.91722 1.02554 1.02334 1.21616 0.95192 0.91215 1.04157 1.21365 0.99894 0.94018 1.01958 1.23404 1.02494 1.01246 0.93480 1.22585 1.01239 0.99341 0.94232 0.87071 1.20861 0.92126 0.89887 0.94981 1.55530 1.18594 1.54954 1.58578 1.01496 0.73320 0.73043 0.72953 1.93552 1.69153 1.67330 1.65498 1.93564 1.55133 1.70500 1.76557 1.30320 1.10306 1.14048 1.24681 1.20782 0.91409 0.98741 0.93549 1.21241 1.00390 0.94550 1.00237 1.21113 0.94665 0.94351 0.87228 1.18543 0.93567 0.92997 0.94713 1.20948 1.26867 1.17527 0.90189 0.92342 1.25009 0.95044 0.94881 0.99226 1.69943 1.27485 1.20099 1.35347 0.86486 0.77536 0.78742 0.84656 1.20459 1.21010 1.19758 1.21250 0.93926 1.00499 1.00803 1.20771 0.99388 0.91483 0.92451 0.91770 0.91936 0.91863 0.92512 0.91977 0.92127 0.88715 0.88232 0.91138 0.89830 0.74938 0.85305 0.85349 0.94702 0.94681 0.92595 0.85356 0.85262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.99 8.86 37.16 0.33 -0.66 16 2 C -0.12 -0.96 2.70 -154.51 -0.42 -1.38 16 3 C -0.12 -0.77 9.85 37.15 0.37 -0.40 16 4 C -0.17 -1.39 9.47 -26.73 -0.25 -1.64 16 5 C -0.15 -1.29 5.55 -90.61 -0.50 -1.80 16 6 H 0.11 0.84 8.14 -51.93 -0.42 0.41 16 7 C 0.15 1.46 5.58 -4.04 -0.02 1.43 16 8 N -1.12 -11.56 6.00 -10.61 -0.06 -11.63 16 9 S 2.70 37.08 5.74 -107.50 -0.62 36.46 16 10 O -0.97 -15.34 16.76 -57.17 -0.96 -16.29 16 11 O -0.97 -15.40 17.28 -57.17 -0.99 -16.39 16 12 C -0.70 -10.99 5.95 -39.59 -0.24 -11.22 16 13 C -0.03 -0.41 9.52 -39.59 -0.38 -0.78 16 14 C -0.15 -2.66 9.70 -39.58 -0.38 -3.05 16 15 C 0.03 0.55 5.07 -104.62 -0.53 0.02 16 16 C 0.04 0.94 5.10 -29.03 -0.15 0.79 16 17 C -0.52 -13.76 9.09 -34.44 -0.31 -14.07 16 18 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 19 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 20 N -0.89 -25.33 13.29 55.43 0.74 -24.59 16 21 Si 0.90 20.67 29.54 -169.99 -5.02 15.65 16 22 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 23 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 24 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 25 C -0.15 -2.70 9.70 -39.58 -0.38 -3.09 16 26 C -0.02 -0.35 9.52 -39.58 -0.38 -0.73 16 27 H 0.06 0.50 7.83 -51.93 -0.41 0.10 16 28 H 0.06 0.45 7.92 -51.93 -0.41 0.04 16 29 H 0.06 0.54 7.90 -51.93 -0.41 0.13 16 30 H 0.06 0.35 7.90 -51.93 -0.41 -0.06 16 31 H 0.06 0.38 7.92 -51.93 -0.41 -0.03 16 32 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.09 0.69 8.05 -51.93 -0.42 0.27 16 34 H 0.10 0.88 7.94 -51.93 -0.41 0.47 16 35 H 0.07 0.72 7.88 -51.93 -0.41 0.31 16 36 H 0.08 0.83 7.38 -51.93 -0.38 0.45 16 37 H 0.42 3.43 8.65 -34.47 -0.30 3.13 16 38 H 0.13 1.75 7.62 -52.48 -0.40 1.35 16 39 H 0.13 2.23 8.06 -52.49 -0.42 1.80 16 40 H 0.03 0.89 8.08 -51.93 -0.42 0.47 16 41 H 0.03 0.89 8.09 -51.93 -0.42 0.47 16 42 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 43 H 0.13 2.26 8.06 -52.49 -0.42 1.84 16 44 H 0.13 1.82 7.62 -52.49 -0.40 1.42 16 LS Contribution 380.28 15.07 5.73 5.73 Total: -1.00 -32.08 380.28 -11.37 -43.45 By element: Atomic # 1 Polarization: 9.48 SS G_CDS: -6.84 Total: 2.63 kcal Atomic # 6 Polarization: -31.67 SS G_CDS: -3.35 Total: -35.02 kcal Atomic # 7 Polarization: -36.89 SS G_CDS: 0.67 Total: -36.22 kcal Atomic # 8 Polarization: -30.74 SS G_CDS: -1.95 Total: -32.68 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Atomic # 16 Polarization: 37.08 SS G_CDS: -0.62 Total: 36.46 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -32.08 -11.37 -43.45 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885010946.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.534 kcal (2) G-P(sol) polarization free energy of solvation -32.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds