Wall clock time and date at job start Tue Mar 31 2020 14:36:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52994 * 115.55106 * 2 1 4 4 C 1.52997 * 117.49753 * 214.28946 * 2 1 3 5 5 C 1.53002 * 60.00204 * 252.51055 * 4 2 1 6 6 H 1.08998 * 117.51765 * 252.51840 * 5 4 2 7 7 C 1.53004 * 117.49341 * 107.48586 * 5 4 2 8 8 N 1.46506 * 109.46578 * 116.38212 * 7 5 4 9 9 S 1.65603 * 119.99824 * 164.99485 * 8 7 5 10 10 O 1.42094 * 106.40226 * 311.46394 * 9 8 7 11 11 O 1.42101 * 106.40228 * 178.53696 * 9 8 7 12 12 C 1.76205 * 107.21426 * 64.99878 * 9 8 7 13 13 C 1.38228 * 120.00116 * 270.20933 * 12 9 8 14 14 C 1.38238 * 120.00114 * 180.26456 * 13 12 9 15 15 C 1.38234 * 119.99675 * 359.50218 * 14 13 12 16 16 C 1.50702 * 120.00257 * 180.25732 * 15 14 13 17 17 C 1.50701 * 109.46833 * 89.99861 * 16 15 14 18 18 H 1.08001 * 120.00342 * 0.02562 * 17 16 15 19 19 C 1.37882 * 120.00009 * 179.97438 * 17 16 15 20 20 N 1.31507 * 119.99884 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00069 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47135 * 90.00375 * 21 19 17 23 23 H 1.48494 * 109.47213 * 210.00628 * 21 19 17 24 24 H 1.48507 * 109.47029 * 330.00073 * 21 19 17 25 25 C 1.38235 * 120.00220 * 0.28720 * 15 14 13 26 26 C 1.38234 * 119.99800 * 89.99999 * 12 9 8 27 27 H 1.08999 * 109.47106 * 274.33785 * 1 2 3 28 28 H 1.09003 * 109.46930 * 34.33012 * 1 2 3 29 29 H 1.08991 * 109.47670 * 154.32945 * 1 2 3 30 30 H 1.09004 * 109.46990 * 205.66805 * 3 2 1 31 31 H 1.09001 * 109.47661 * 325.66758 * 3 2 1 32 32 H 1.09006 * 109.47582 * 85.67103 * 3 2 1 33 33 H 1.09000 * 117.50167 * 145.02162 * 4 2 1 34 34 H 1.08999 * 117.50118 * 0.02562 * 4 2 1 35 35 H 1.08997 * 109.47284 * 356.38511 * 7 5 4 36 36 H 1.09000 * 109.46710 * 236.37804 * 7 5 4 37 37 H 0.96998 * 120.00049 * 344.99974 * 8 7 5 38 38 H 1.08004 * 120.00270 * 0.03858 * 13 12 9 39 39 H 1.08002 * 120.00519 * 179.78838 * 14 13 12 40 40 H 1.08993 * 109.47429 * 210.00613 * 16 15 14 41 41 H 1.08998 * 109.46961 * 330.00864 * 16 15 14 42 42 H 0.96998 * 119.99939 * 179.97438 * 20 19 17 43 43 H 1.07996 * 120.00471 * 179.97438 * 25 15 14 44 44 H 1.08001 * 120.00294 * 359.97438 * 26 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1899 1.3803 0.0000 4 6 2.2364 -1.1213 -0.7646 5 6 2.2364 -1.1207 0.7654 6 1 3.1713 -0.8747 1.2689 7 6 1.3587 -2.1557 1.4722 8 7 2.2057 -3.0699 2.2423 9 16 1.5319 -4.0510 3.3938 10 8 0.6986 -3.2205 4.1907 11 8 2.5935 -4.8293 3.9290 12 6 0.4620 -5.1754 2.5597 13 6 -0.8642 -4.8441 2.3541 14 6 -1.7049 -5.7286 1.7046 15 6 -1.2168 -6.9400 1.2516 16 6 -2.1319 -7.9019 0.5384 17 6 -2.0995 -7.6218 -0.9420 18 1 -1.4782 -6.8271 -1.3279 19 6 -2.8624 -8.3808 -1.8041 20 7 -3.6185 -9.3488 -1.3344 21 14 -2.8217 -8.0341 -3.6392 22 1 -1.7492 -8.8430 -4.2721 23 1 -4.1317 -8.3924 -4.2397 24 1 -2.5520 -6.5912 -3.8645 25 6 0.1104 -7.2695 1.4534 26 6 0.9499 -6.3870 2.1072 27 1 -0.3633 0.0777 1.0247 28 1 -0.3633 0.8487 -0.5796 29 1 -0.3634 -0.9261 -0.4451 30 1 3.1823 1.3086 -0.4452 31 1 1.5810 2.0742 -0.5796 32 1 2.2766 1.7417 1.0248 33 1 3.1715 -0.8757 -1.2680 34 1 1.6112 -1.8587 -1.2679 35 1 0.7946 -2.7210 0.7304 36 1 0.6675 -1.6474 2.1445 37 1 3.1611 -3.1005 2.0778 38 1 -1.2445 -3.8958 2.7042 39 1 -2.7419 -5.4713 1.5469 40 1 -1.7997 -8.9235 0.7223 41 1 -3.1493 -7.7782 0.9093 42 1 -4.1555 -9.8825 -1.9408 43 1 0.4917 -8.2160 1.0998 44 1 1.9870 -6.6443 2.2645 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885010946.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:36:39 Heat of formation + Delta-G solvation = -67.302981 kcal Electronic energy + Delta-G solvation = -24841.216489 eV Core-core repulsion = 21270.530539 eV Total energy + Delta-G solvation = -3570.685950 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.24047 -39.77728 -38.33569 -36.97926 -35.69698 -35.57121 -33.31973 -31.96472 -30.26650 -29.24863 -28.54548 -26.79532 -25.59409 -23.74160 -22.49503 -22.17015 -20.67285 -19.70880 -18.94108 -18.55775 -18.23570 -17.51153 -16.85313 -16.52699 -15.99840 -15.76420 -15.53983 -15.19998 -15.13986 -14.77892 -14.61045 -14.47183 -14.45292 -13.87066 -13.52072 -13.42992 -13.41279 -13.24244 -13.22138 -13.14889 -12.98293 -12.79668 -12.67619 -12.61938 -12.24277 -12.13433 -12.04380 -11.91759 -11.67115 -11.48460 -11.02662 -10.65397 -10.50194 -10.28599 -9.96612 -9.95041 -8.26393 -6.39613 -0.62669 -0.06478 0.39507 1.39338 1.39588 1.50921 1.98926 2.34903 2.55808 2.78302 2.84522 3.06446 3.29791 3.67697 3.84692 3.85793 3.92996 3.96958 4.15485 4.16822 4.23146 4.46024 4.46354 4.47383 4.69682 4.76840 4.81318 4.85089 4.90695 4.94754 4.99723 5.10105 5.10460 5.13570 5.14647 5.24171 5.25986 5.32250 5.33298 5.34730 5.50507 5.67200 5.85709 5.92039 6.09431 6.10264 6.72401 7.29599 8.83999 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.010545 B = 0.003745 C = 0.002976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2654.648798 B = 7475.672513 C = 9406.688631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.121 4.121 3 C -0.114 4.114 4 C -0.172 4.172 5 C -0.155 4.155 6 H 0.124 0.876 7 C 0.140 3.860 8 N -1.102 6.102 9 S 2.728 3.272 10 O -0.981 6.981 11 O -0.984 6.984 12 C -0.701 4.701 13 C -0.020 4.020 14 C -0.154 4.154 15 C -0.003 4.003 16 C 0.047 3.953 17 C -0.531 4.531 18 H 0.058 0.942 19 C 0.007 3.993 20 N -0.928 5.928 21 Si 0.966 3.034 22 H -0.272 1.272 23 H -0.280 1.280 24 H -0.264 1.264 25 C -0.156 4.156 26 C -0.019 4.019 27 H 0.064 0.936 28 H 0.069 0.931 29 H 0.054 0.946 30 H 0.062 0.938 31 H 0.066 0.934 32 H 0.063 0.937 33 H 0.105 0.895 34 H 0.089 0.911 35 H 0.067 0.933 36 H 0.085 0.915 37 H 0.429 0.571 38 H 0.156 0.844 39 H 0.130 0.870 40 H 0.010 0.990 41 H 0.012 0.988 42 H 0.267 0.733 43 H 0.129 0.871 44 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.887 19.625 3.291 23.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.122 4.122 3 C -0.172 4.172 4 C -0.209 4.209 5 C -0.175 4.175 6 H 0.142 0.858 7 C 0.014 3.986 8 N -0.865 5.865 9 S 2.818 3.182 10 O -0.971 6.971 11 O -0.974 6.974 12 C -0.788 4.788 13 C -0.039 4.039 14 C -0.173 4.173 15 C -0.003 4.003 16 C 0.010 3.990 17 C -0.569 4.569 18 H 0.076 0.924 19 C -0.191 4.191 20 N -0.567 5.567 21 Si 0.790 3.210 22 H -0.197 1.197 23 H -0.206 1.206 24 H -0.188 1.188 25 C -0.175 4.175 26 C -0.038 4.038 27 H 0.083 0.917 28 H 0.088 0.912 29 H 0.073 0.927 30 H 0.081 0.919 31 H 0.085 0.915 32 H 0.082 0.918 33 H 0.123 0.877 34 H 0.108 0.892 35 H 0.085 0.915 36 H 0.103 0.897 37 H 0.266 0.734 38 H 0.174 0.826 39 H 0.148 0.852 40 H 0.029 0.971 41 H 0.030 0.970 42 H 0.076 0.924 43 H 0.147 0.853 44 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 12.712 19.534 4.178 23.678 hybrid contribution -0.447 -1.000 -1.642 1.974 sum 12.265 18.534 2.536 22.369 Atomic orbital electron populations 1.21466 0.92036 1.02463 1.02469 1.21716 0.95105 0.91792 1.03588 1.21379 1.00195 0.93226 1.02353 1.23432 1.02889 1.01232 0.93382 1.22573 1.01540 0.99129 0.94211 0.85835 1.21003 0.92457 0.90116 0.94978 1.55203 1.19328 1.53902 1.58022 1.00685 0.72383 0.72413 0.72707 1.93535 1.69829 1.67429 1.66333 1.93541 1.55387 1.71261 1.77255 1.30795 1.10642 1.14243 1.23117 1.21042 0.91292 0.99158 0.92371 1.21301 1.01019 0.94269 1.00700 1.20814 0.95106 0.94899 0.89500 1.18273 0.93244 0.92918 0.94563 1.21283 1.26625 1.17353 0.91593 0.92359 1.25911 0.94583 0.94581 1.04073 1.70066 1.28420 1.21190 1.37063 0.85426 0.77718 0.78993 0.78830 1.19711 1.20564 1.18791 1.21303 0.93480 1.01219 1.01489 1.21024 1.00254 0.91113 0.91372 0.91666 0.91209 0.92711 0.91877 0.91522 0.91801 0.87670 0.89224 0.91463 0.89665 0.73358 0.82595 0.85186 0.97132 0.97016 0.92429 0.85332 0.82710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.83 8.86 71.98 0.64 -1.20 16 2 C -0.12 -1.66 2.70 -52.18 -0.14 -1.80 16 3 C -0.11 -1.25 9.85 71.98 0.71 -0.54 16 4 C -0.17 -2.47 9.47 30.59 0.29 -2.18 16 5 C -0.15 -2.20 5.55 -10.79 -0.06 -2.26 16 6 H 0.12 1.46 8.14 -2.39 -0.02 1.44 16 7 C 0.14 2.43 5.58 86.38 0.48 2.91 16 8 N -1.10 -19.72 6.00 -187.47 -1.12 -20.84 16 9 S 2.73 68.05 5.74 -56.49 -0.32 67.73 16 10 O -0.98 -28.67 16.76 -128.00 -2.15 -30.81 16 11 O -0.98 -28.78 17.28 -128.00 -2.21 -31.00 16 12 C -0.70 -20.55 5.95 22.27 0.13 -20.42 16 13 C -0.02 -0.60 9.52 22.27 0.21 -0.39 16 14 C -0.15 -5.67 9.70 22.27 0.22 -5.46 16 15 C 0.00 -0.12 5.07 -19.87 -0.10 -0.22 16 16 C 0.05 2.41 5.10 29.10 0.15 2.56 16 17 C -0.53 -29.00 9.09 25.60 0.23 -28.77 16 18 H 0.06 3.11 7.74 -2.91 -0.02 3.09 16 19 C 0.01 0.40 5.46 84.66 0.46 0.86 16 20 N -0.93 -54.28 13.29 21.45 0.28 -54.00 16 21 Si 0.97 42.61 29.54 68.60 2.03 44.64 16 22 H -0.27 -11.61 7.11 99.48 0.71 -10.91 16 23 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 24 H -0.26 -11.14 7.11 99.48 0.71 -10.43 16 25 C -0.16 -5.82 9.70 22.27 0.22 -5.61 16 26 C -0.02 -0.58 9.52 22.27 0.21 -0.37 16 27 H 0.06 0.91 7.83 -2.39 -0.02 0.89 16 28 H 0.07 0.88 7.92 -2.39 -0.02 0.86 16 29 H 0.05 0.87 7.90 -2.39 -0.02 0.85 16 30 H 0.06 0.61 7.90 -2.39 -0.02 0.59 16 31 H 0.07 0.66 7.92 -2.39 -0.02 0.65 16 32 H 0.06 0.66 8.14 -2.38 -0.02 0.64 16 33 H 0.10 1.27 8.05 -2.39 -0.02 1.25 16 34 H 0.09 1.47 7.94 -2.39 -0.02 1.45 16 35 H 0.07 1.23 7.88 -2.39 -0.02 1.21 16 36 H 0.09 1.48 7.38 -2.39 -0.02 1.46 16 37 H 0.43 5.71 8.65 -96.74 -0.84 4.87 16 38 H 0.16 3.88 7.62 -2.91 -0.02 3.86 16 39 H 0.13 4.61 8.06 -2.91 -0.02 4.59 16 40 H 0.01 0.57 8.08 -2.39 -0.02 0.55 16 41 H 0.01 0.63 8.09 -2.39 -0.02 0.61 16 42 H 0.27 14.65 8.31 -92.71 -0.77 13.88 16 43 H 0.13 4.65 8.06 -2.91 -0.02 4.62 16 44 H 0.16 3.99 7.62 -2.91 -0.02 3.97 16 Total: -1.00 -68.84 380.28 0.31 -68.53 By element: Atomic # 1 Polarization: 18.47 SS G_CDS: 0.15 Total: 18.62 kcal Atomic # 6 Polarization: -66.52 SS G_CDS: 3.65 Total: -62.87 kcal Atomic # 7 Polarization: -74.00 SS G_CDS: -0.84 Total: -74.84 kcal Atomic # 8 Polarization: -57.45 SS G_CDS: -4.36 Total: -61.81 kcal Atomic # 14 Polarization: 42.61 SS G_CDS: 2.03 Total: 44.64 kcal Atomic # 16 Polarization: 68.05 SS G_CDS: -0.32 Total: 67.73 kcal Total: -68.84 0.31 -68.53 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885010946.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.227 kcal (2) G-P(sol) polarization free energy of solvation -68.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.530 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds