Wall clock time and date at job start Tue Mar 31 2020 14:36:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 115.55771 * 2 1 4 4 C 1.53069 * 117.51660 * 214.29263 * 2 1 3 5 5 C 1.53000 * 59.98584 * 252.52266 * 4 2 1 6 6 H 1.09002 * 117.49833 * 107.50105 * 5 4 2 7 7 C 1.52996 * 117.50107 * 252.50051 * 5 4 2 8 8 N 1.46502 * 109.47291 * 243.74790 * 7 5 4 9 9 S 1.65597 * 120.00392 * 164.99643 * 8 7 5 10 10 O 1.42099 * 106.40279 * 178.53787 * 9 8 7 11 11 O 1.42094 * 106.40180 * 311.45934 * 9 8 7 12 12 C 1.76197 * 107.21498 * 65.00122 * 9 8 7 13 13 C 1.38244 * 120.00096 * 269.72629 * 12 9 8 14 14 C 1.38233 * 119.99826 * 179.78990 * 13 12 9 15 15 C 1.38232 * 120.00305 * 0.46433 * 14 13 12 16 16 C 1.50700 * 119.99836 * 179.79222 * 15 14 13 17 17 C 1.50703 * 109.47144 * 269.97271 * 16 15 14 18 18 H 1.08001 * 119.99638 * 0.02562 * 17 16 15 19 19 C 1.37877 * 120.00169 * 180.02562 * 17 16 15 20 20 N 1.31506 * 120.00004 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 119.99797 * 180.02562 * 19 17 16 22 22 H 1.48491 * 109.47132 * 359.97438 * 21 19 17 23 23 H 1.48499 * 109.47121 * 119.99715 * 21 19 17 24 24 H 1.48506 * 109.46517 * 239.99537 * 21 19 17 25 25 C 1.38230 * 120.00080 * 359.76511 * 15 14 13 26 26 C 1.38239 * 120.00143 * 0.02693 * 25 15 14 27 27 H 1.08997 * 109.47537 * 274.31191 * 1 2 3 28 28 H 1.09001 * 109.46849 * 34.31951 * 1 2 3 29 29 H 1.09005 * 109.46784 * 154.31410 * 1 2 3 30 30 H 1.09004 * 109.46980 * 205.68498 * 3 2 1 31 31 H 1.08995 * 109.47123 * 325.68334 * 3 2 1 32 32 H 1.09002 * 109.47547 * 85.68989 * 3 2 1 33 33 H 1.09008 * 117.49334 * 145.03821 * 4 2 1 34 34 H 1.08999 * 117.51639 * 0.02562 * 4 2 1 35 35 H 1.09004 * 109.47091 * 3.74396 * 7 5 4 36 36 H 1.09000 * 109.47261 * 123.74562 * 7 5 4 37 37 H 0.97006 * 119.99493 * 344.99638 * 8 7 5 38 38 H 1.07999 * 119.99398 * 359.97438 * 13 12 9 39 39 H 1.08004 * 119.99556 * 180.25268 * 14 13 12 40 40 H 1.08993 * 109.47540 * 29.97426 * 16 15 14 41 41 H 1.09008 * 109.47018 * 149.97721 * 16 15 14 42 42 H 0.97003 * 120.00426 * 180.02562 * 20 19 17 43 43 H 1.08000 * 120.00579 * 180.02562 * 25 15 14 44 44 H 1.07995 * 120.00247 * 179.97438 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1901 1.3803 0.0000 4 6 2.2372 -1.1216 -0.7649 5 6 2.2365 -1.1209 0.7651 6 1 1.6112 -1.8584 1.2685 7 6 3.5486 -0.7756 1.4721 8 7 4.0093 -1.9349 2.2402 9 16 5.5663 -1.9908 2.8013 10 8 5.6885 -3.2075 3.5252 11 8 6.4013 -1.6532 1.7022 12 6 5.7435 -0.6917 3.9783 13 6 6.1598 0.5610 3.5678 14 6 6.2946 1.5813 4.4906 15 6 6.0224 1.3465 5.8254 16 6 6.1739 2.4577 6.8320 17 6 7.5784 2.4526 7.3783 18 1 8.2902 1.7184 7.0309 19 6 7.9546 3.3852 8.3216 20 7 7.0880 4.2795 8.7442 21 14 9.6958 3.3792 8.9981 22 1 10.4692 2.2813 8.3647 23 1 10.3472 4.6801 8.7001 24 1 9.6549 3.1714 10.4680 25 6 5.6106 0.0927 6.2367 26 6 5.4717 -0.9266 5.3132 27 1 -0.3634 0.0773 1.0247 28 1 -0.3633 0.8488 -0.5794 29 1 -0.3633 -0.9262 -0.4455 30 1 3.1823 1.3085 -0.4454 31 1 1.5811 2.0742 -0.5793 32 1 2.2772 1.7415 1.0247 33 1 3.1725 -0.8756 -1.2678 34 1 1.6125 -1.8593 -1.2685 35 1 4.3016 -0.5087 0.7305 36 1 3.3878 0.0661 2.1458 37 1 3.4022 -2.6698 2.4202 38 1 6.3769 0.7431 2.5256 39 1 6.6160 2.5611 4.1692 40 1 5.9752 3.4147 6.3496 41 1 5.4663 2.3081 7.6476 42 1 7.3528 4.9359 9.4075 43 1 5.3975 -0.0907 7.2794 44 1 5.1504 -1.9063 5.6346 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885010947.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:36:43 Heat of formation + Delta-G solvation = -47.652944 kcal Electronic energy + Delta-G solvation = -24665.833833 eV Core-core repulsion = 21095.999972 eV Total energy + Delta-G solvation = -3569.833860 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.19161 -38.80473 -37.13103 -35.76408 -34.86388 -33.68504 -31.56560 -30.58438 -29.68865 -28.00196 -27.43779 -26.09758 -23.73639 -22.36960 -21.60694 -20.90878 -19.68128 -18.91960 -17.78914 -17.18641 -16.51798 -16.43173 -15.53309 -15.09506 -14.93991 -14.65404 -14.37613 -14.30403 -14.06430 -13.85746 -13.66187 -13.11660 -12.88345 -12.84697 -12.61221 -12.35200 -12.25000 -12.09486 -12.01133 -11.92444 -11.70739 -11.66821 -11.49855 -11.32359 -10.97199 -10.93621 -10.59552 -10.49892 -10.37968 -9.86873 -9.76824 -9.66237 -9.48535 -8.59918 -8.55111 -8.39204 -6.18206 -4.23116 0.50591 1.32134 1.78717 3.03064 3.22577 3.30663 3.35976 3.38497 3.76525 4.11239 4.21045 4.36602 4.39422 4.49502 4.53754 4.75363 4.86745 5.07664 5.15229 5.21485 5.23457 5.32832 5.33712 5.46309 5.51433 5.56320 5.60767 5.65962 5.71024 5.71575 5.82724 5.86253 5.90375 5.93158 6.03130 6.24163 6.32326 6.49938 6.81912 6.83506 6.90180 7.28351 7.42275 7.57967 7.77151 8.12283 8.81980 9.42015 10.91872 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.016305 B = 0.002935 C = 0.002643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1716.860653 B = 9538.488288 C =10592.684645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.121 4.121 3 C -0.123 4.123 4 C -0.170 4.170 5 C -0.153 4.153 6 H 0.111 0.889 7 C 0.148 3.852 8 N -1.118 6.118 9 S 2.699 3.301 10 O -0.966 6.966 11 O -0.965 6.965 12 C -0.704 4.704 13 C -0.025 4.025 14 C -0.145 4.145 15 C 0.027 3.973 16 C 0.039 3.961 17 C -0.517 4.517 18 H 0.059 0.941 19 C 0.061 3.939 20 N -0.891 5.891 21 Si 0.898 3.102 22 H -0.271 1.271 23 H -0.282 1.282 24 H -0.282 1.282 25 C -0.146 4.146 26 C -0.021 4.021 27 H 0.061 0.939 28 H 0.061 0.939 29 H 0.056 0.944 30 H 0.061 0.939 31 H 0.062 0.938 32 H 0.065 0.935 33 H 0.098 0.902 34 H 0.094 0.906 35 H 0.081 0.919 36 H 0.072 0.928 37 H 0.416 0.584 38 H 0.129 0.871 39 H 0.129 0.871 40 H 0.035 0.965 41 H 0.035 0.965 42 H 0.264 0.736 43 H 0.129 0.871 44 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.060 -9.165 -16.995 23.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.122 4.122 3 C -0.180 4.180 4 C -0.207 4.207 5 C -0.173 4.173 6 H 0.129 0.871 7 C 0.022 3.978 8 N -0.877 5.877 9 S 2.792 3.208 10 O -0.957 6.957 11 O -0.955 6.955 12 C -0.794 4.794 13 C -0.045 4.045 14 C -0.164 4.164 15 C 0.026 3.974 16 C 0.002 3.998 17 C -0.555 4.555 18 H 0.078 0.922 19 C -0.142 4.142 20 N -0.530 5.530 21 Si 0.725 3.275 22 H -0.196 1.196 23 H -0.208 1.208 24 H -0.208 1.208 25 C -0.165 4.165 26 C -0.041 4.041 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.075 0.925 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.084 0.916 33 H 0.116 0.884 34 H 0.113 0.887 35 H 0.099 0.901 36 H 0.091 0.909 37 H 0.250 0.750 38 H 0.147 0.853 39 H 0.147 0.853 40 H 0.053 0.947 41 H 0.053 0.947 42 H 0.073 0.927 43 H 0.147 0.853 44 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -12.305 -9.459 -17.190 23.160 hybrid contribution 0.467 0.361 1.059 1.213 sum -11.838 -9.098 -16.130 21.980 Atomic orbital electron populations 1.21366 0.91857 1.01966 1.02078 1.21642 0.94876 0.91559 1.04092 1.21424 1.00253 0.93820 1.02497 1.23406 1.02664 1.01040 0.93585 1.22578 0.98112 1.02319 0.94275 0.87111 1.20851 0.95084 0.87291 0.94594 1.55559 1.33047 1.29506 1.69591 1.01514 0.72179 0.73565 0.73586 1.93566 1.85126 1.43298 1.73676 1.93552 1.64772 1.84972 1.52189 1.30319 1.21908 1.15564 1.11569 1.20783 0.92962 0.91059 0.99662 1.21241 1.02498 0.99506 0.93179 1.21114 0.85266 0.96031 0.94943 1.18545 0.98164 0.90904 0.92169 1.21011 0.95580 1.15644 1.23250 0.92233 1.25003 0.97767 0.95172 0.96214 1.69952 1.34537 1.17686 1.30801 0.86428 0.84109 0.78110 0.78808 1.19560 1.20786 1.20795 1.21250 1.02466 0.92986 0.99769 1.20773 0.93370 0.98792 0.91163 0.92045 0.91960 0.92519 0.92029 0.91916 0.91648 0.88355 0.88720 0.90077 0.90946 0.74988 0.85299 0.85343 0.94705 0.94719 0.92679 0.85348 0.85258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.71 9.85 37.16 0.37 -0.35 16 2 C -0.12 -0.87 2.70 -154.47 -0.42 -1.29 16 3 C -0.12 -0.88 8.86 37.16 0.33 -0.55 16 4 C -0.17 -1.22 9.47 -26.70 -0.25 -1.47 16 5 C -0.15 -1.17 5.62 -90.62 -0.51 -1.68 16 6 H 0.11 0.75 7.98 -51.93 -0.41 0.34 16 7 C 0.15 1.36 5.58 -4.04 -0.02 1.33 16 8 N -1.12 -11.08 6.00 -10.61 -0.06 -11.15 16 9 S 2.70 37.15 5.74 -107.50 -0.62 36.53 16 10 O -0.97 -15.57 17.28 -57.17 -0.99 -16.56 16 11 O -0.96 -15.50 16.75 -57.17 -0.96 -16.46 16 12 C -0.70 -10.99 5.95 -39.58 -0.24 -11.23 16 13 C -0.03 -0.40 9.52 -39.58 -0.38 -0.78 16 14 C -0.15 -2.66 9.70 -39.59 -0.38 -3.05 16 15 C 0.03 0.55 5.07 -104.63 -0.53 0.02 16 16 C 0.04 0.95 5.10 -29.03 -0.15 0.80 16 17 C -0.52 -13.99 9.09 -34.44 -0.31 -14.30 16 18 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 19 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 20 N -0.89 -25.46 13.29 55.43 0.74 -24.72 16 21 Si 0.90 21.10 29.54 -169.99 -5.02 16.08 16 22 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 23 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 24 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 25 C -0.15 -2.70 9.70 -39.58 -0.38 -3.09 16 26 C -0.02 -0.35 9.52 -39.58 -0.38 -0.73 16 27 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.06 0.35 7.92 -51.93 -0.41 -0.06 16 29 H 0.06 0.32 7.90 -51.93 -0.41 -0.09 16 30 H 0.06 0.43 7.90 -51.93 -0.41 0.02 16 31 H 0.06 0.40 7.92 -51.93 -0.41 -0.01 16 32 H 0.06 0.49 7.83 -51.93 -0.41 0.08 16 33 H 0.10 0.72 7.94 -51.92 -0.41 0.30 16 34 H 0.09 0.59 8.05 -51.93 -0.42 0.17 16 35 H 0.08 0.76 7.48 -51.93 -0.39 0.37 16 36 H 0.07 0.66 7.77 -51.93 -0.40 0.25 16 37 H 0.42 3.22 8.55 -34.47 -0.29 2.92 16 38 H 0.13 1.76 7.61 -52.49 -0.40 1.36 16 39 H 0.13 2.22 8.06 -52.48 -0.42 1.80 16 40 H 0.03 0.88 8.08 -51.93 -0.42 0.46 16 41 H 0.03 0.88 8.09 -51.92 -0.42 0.46 16 42 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 43 H 0.13 2.26 8.06 -52.49 -0.42 1.84 16 44 H 0.13 1.82 7.62 -52.49 -0.40 1.42 16 LS Contribution 380.08 15.07 5.73 5.73 Total: -1.00 -32.62 380.08 -11.37 -43.98 By element: Atomic # 1 Polarization: 8.18 SS G_CDS: -6.83 Total: 1.35 kcal Atomic # 6 Polarization: -31.44 SS G_CDS: -3.35 Total: -34.79 kcal Atomic # 7 Polarization: -36.54 SS G_CDS: 0.67 Total: -35.87 kcal Atomic # 8 Polarization: -31.07 SS G_CDS: -1.95 Total: -33.01 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Atomic # 16 Polarization: 37.15 SS G_CDS: -0.62 Total: 36.53 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -32.62 -11.37 -43.98 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885010947.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.670 kcal (2) G-P(sol) polarization free energy of solvation -32.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds