Wall clock time and date at job start Tue Mar 31 2020 14:36:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 115.55771 * 2 1 4 4 C 1.53069 * 117.51660 * 214.29263 * 2 1 3 5 5 C 1.53000 * 59.98584 * 252.52266 * 4 2 1 6 6 H 1.09002 * 117.49833 * 107.50105 * 5 4 2 7 7 C 1.52996 * 117.50107 * 252.50051 * 5 4 2 8 8 N 1.46502 * 109.47291 * 243.74790 * 7 5 4 9 9 S 1.65597 * 120.00392 * 164.99643 * 8 7 5 10 10 O 1.42099 * 106.40279 * 178.53787 * 9 8 7 11 11 O 1.42094 * 106.40180 * 311.45934 * 9 8 7 12 12 C 1.76197 * 107.21498 * 65.00122 * 9 8 7 13 13 C 1.38244 * 120.00096 * 269.72629 * 12 9 8 14 14 C 1.38233 * 119.99826 * 179.78990 * 13 12 9 15 15 C 1.38232 * 120.00305 * 0.46433 * 14 13 12 16 16 C 1.50700 * 119.99836 * 179.79222 * 15 14 13 17 17 C 1.50703 * 109.47144 * 269.97271 * 16 15 14 18 18 H 1.08001 * 119.99638 * 0.02562 * 17 16 15 19 19 C 1.37877 * 120.00169 * 180.02562 * 17 16 15 20 20 N 1.31506 * 120.00004 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 119.99797 * 180.02562 * 19 17 16 22 22 H 1.48491 * 109.47132 * 359.97438 * 21 19 17 23 23 H 1.48499 * 109.47121 * 119.99715 * 21 19 17 24 24 H 1.48506 * 109.46517 * 239.99537 * 21 19 17 25 25 C 1.38230 * 120.00080 * 359.76511 * 15 14 13 26 26 C 1.38239 * 120.00143 * 0.02693 * 25 15 14 27 27 H 1.08997 * 109.47537 * 274.31191 * 1 2 3 28 28 H 1.09001 * 109.46849 * 34.31951 * 1 2 3 29 29 H 1.09005 * 109.46784 * 154.31410 * 1 2 3 30 30 H 1.09004 * 109.46980 * 205.68498 * 3 2 1 31 31 H 1.08995 * 109.47123 * 325.68334 * 3 2 1 32 32 H 1.09002 * 109.47547 * 85.68989 * 3 2 1 33 33 H 1.09008 * 117.49334 * 145.03821 * 4 2 1 34 34 H 1.08999 * 117.51639 * 0.02562 * 4 2 1 35 35 H 1.09004 * 109.47091 * 3.74396 * 7 5 4 36 36 H 1.09000 * 109.47261 * 123.74562 * 7 5 4 37 37 H 0.97006 * 119.99493 * 344.99638 * 8 7 5 38 38 H 1.07999 * 119.99398 * 359.97438 * 13 12 9 39 39 H 1.08004 * 119.99556 * 180.25268 * 14 13 12 40 40 H 1.08993 * 109.47540 * 29.97426 * 16 15 14 41 41 H 1.09008 * 109.47018 * 149.97721 * 16 15 14 42 42 H 0.97003 * 120.00426 * 180.02562 * 20 19 17 43 43 H 1.08000 * 120.00579 * 180.02562 * 25 15 14 44 44 H 1.07995 * 120.00247 * 179.97438 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1901 1.3803 0.0000 4 6 2.2372 -1.1216 -0.7649 5 6 2.2365 -1.1209 0.7651 6 1 1.6112 -1.8584 1.2685 7 6 3.5486 -0.7756 1.4721 8 7 4.0093 -1.9349 2.2402 9 16 5.5663 -1.9908 2.8013 10 8 5.6885 -3.2075 3.5252 11 8 6.4013 -1.6532 1.7022 12 6 5.7435 -0.6917 3.9783 13 6 6.1598 0.5610 3.5678 14 6 6.2946 1.5813 4.4906 15 6 6.0224 1.3465 5.8254 16 6 6.1739 2.4577 6.8320 17 6 7.5784 2.4526 7.3783 18 1 8.2902 1.7184 7.0309 19 6 7.9546 3.3852 8.3216 20 7 7.0880 4.2795 8.7442 21 14 9.6958 3.3792 8.9981 22 1 10.4692 2.2813 8.3647 23 1 10.3472 4.6801 8.7001 24 1 9.6549 3.1714 10.4680 25 6 5.6106 0.0927 6.2367 26 6 5.4717 -0.9266 5.3132 27 1 -0.3634 0.0773 1.0247 28 1 -0.3633 0.8488 -0.5794 29 1 -0.3633 -0.9262 -0.4455 30 1 3.1823 1.3085 -0.4454 31 1 1.5811 2.0742 -0.5793 32 1 2.2772 1.7415 1.0247 33 1 3.1725 -0.8756 -1.2678 34 1 1.6125 -1.8593 -1.2685 35 1 4.3016 -0.5087 0.7305 36 1 3.3878 0.0661 2.1458 37 1 3.4022 -2.6698 2.4202 38 1 6.3769 0.7431 2.5256 39 1 6.6160 2.5611 4.1692 40 1 5.9752 3.4147 6.3496 41 1 5.4663 2.3081 7.6476 42 1 7.3528 4.9359 9.4075 43 1 5.3975 -0.0907 7.2794 44 1 5.1504 -1.9063 5.6346 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885010947.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:36:42 Heat of formation + Delta-G solvation = -67.455036 kcal Electronic energy + Delta-G solvation = -24666.692516 eV Core-core repulsion = 21095.999972 eV Total energy + Delta-G solvation = -3570.692544 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.23610 -39.76595 -38.33969 -36.98218 -35.69740 -35.57446 -33.32053 -31.96161 -30.25609 -29.24942 -28.53881 -26.78665 -25.59768 -23.73868 -22.49220 -22.20589 -20.64820 -19.69437 -18.95407 -18.58251 -18.21501 -17.41924 -16.86765 -16.51860 -16.01030 -15.94533 -15.37869 -15.31830 -15.19053 -14.65174 -14.60416 -14.45307 -14.39564 -13.92781 -13.51337 -13.41734 -13.38370 -13.26805 -13.20932 -13.14369 -13.01294 -12.77775 -12.69181 -12.65923 -12.25191 -12.16226 -12.04131 -11.88279 -11.65967 -11.47134 -11.06007 -10.66388 -10.42647 -10.30140 -9.96202 -9.94894 -8.27775 -6.40373 -0.63104 -0.06611 0.39795 1.36795 1.38389 1.51026 2.00102 2.34358 2.56038 2.75536 2.87349 3.04971 3.30862 3.66902 3.83851 3.90289 3.92568 3.97706 4.15909 4.20839 4.23774 4.41376 4.46692 4.47942 4.74462 4.75499 4.81603 4.85208 4.91168 4.95642 5.00764 5.10621 5.10857 5.14233 5.15492 5.24749 5.25947 5.32876 5.33383 5.35862 5.50538 5.66791 5.86191 5.92306 6.09519 6.10576 6.71654 7.28827 8.82503 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.016305 B = 0.002935 C = 0.002643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1716.860653 B = 9538.488288 C =10592.684645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.123 4.123 3 C -0.127 4.127 4 C -0.169 4.169 5 C -0.157 4.157 6 H 0.122 0.878 7 C 0.140 3.860 8 N -1.101 6.101 9 S 2.727 3.273 10 O -0.985 6.985 11 O -0.983 6.983 12 C -0.701 4.701 13 C -0.020 4.020 14 C -0.154 4.154 15 C -0.003 4.003 16 C 0.048 3.952 17 C -0.533 4.533 18 H 0.053 0.947 19 C 0.010 3.990 20 N -0.925 5.925 21 Si 0.964 3.036 22 H -0.268 1.268 23 H -0.275 1.275 24 H -0.275 1.275 25 C -0.156 4.156 26 C -0.019 4.019 27 H 0.059 0.941 28 H 0.065 0.935 29 H 0.063 0.937 30 H 0.060 0.940 31 H 0.068 0.932 32 H 0.059 0.941 33 H 0.095 0.905 34 H 0.105 0.895 35 H 0.080 0.920 36 H 0.074 0.926 37 H 0.429 0.571 38 H 0.156 0.844 39 H 0.131 0.869 40 H 0.014 0.986 41 H 0.013 0.987 42 H 0.267 0.733 43 H 0.129 0.871 44 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.279 -10.646 -18.454 25.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.124 4.124 3 C -0.184 4.184 4 C -0.206 4.206 5 C -0.177 4.177 6 H 0.140 0.860 7 C 0.014 3.986 8 N -0.864 5.864 9 S 2.817 3.183 10 O -0.976 6.976 11 O -0.973 6.973 12 C -0.788 4.788 13 C -0.039 4.039 14 C -0.173 4.173 15 C -0.003 4.003 16 C 0.011 3.989 17 C -0.571 4.571 18 H 0.071 0.929 19 C -0.189 4.189 20 N -0.564 5.564 21 Si 0.788 3.212 22 H -0.192 1.192 23 H -0.200 1.200 24 H -0.201 1.201 25 C -0.175 4.175 26 C -0.038 4.038 27 H 0.078 0.922 28 H 0.084 0.916 29 H 0.082 0.918 30 H 0.079 0.921 31 H 0.087 0.913 32 H 0.078 0.922 33 H 0.114 0.886 34 H 0.124 0.876 35 H 0.099 0.901 36 H 0.092 0.908 37 H 0.266 0.734 38 H 0.174 0.826 39 H 0.149 0.851 40 H 0.033 0.967 41 H 0.031 0.969 42 H 0.076 0.924 43 H 0.147 0.853 44 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -12.528 -10.937 -18.632 24.975 hybrid contribution 0.444 0.771 1.401 1.659 sum -12.084 -10.166 -17.231 23.373 Atomic orbital electron populations 1.21378 0.91104 1.02574 1.02169 1.21723 0.95464 0.91356 1.03820 1.21462 1.00457 0.94202 1.02257 1.23471 1.02747 1.01170 0.93211 1.22575 0.97509 1.03024 0.94598 0.86008 1.21017 0.95979 0.86884 0.94678 1.55197 1.31984 1.30324 1.68886 1.00694 0.72682 0.72282 0.72620 1.93539 1.85923 1.43928 1.74181 1.93532 1.66264 1.85044 1.52454 1.30788 1.20019 1.15987 1.11991 1.21042 0.91832 0.90520 1.00491 1.21304 1.02738 1.00503 0.92720 1.20817 0.88610 0.95775 0.95119 1.18269 0.96553 0.91672 0.92400 1.21317 0.96792 1.15460 1.23497 0.92864 1.25854 1.01795 0.94768 0.96503 1.70055 1.36508 1.18407 1.31476 0.85414 0.79233 0.78294 0.78239 1.19239 1.20003 1.20061 1.21308 1.02783 0.92893 1.00492 1.21027 0.92534 0.99186 0.91046 0.92182 0.91561 0.91789 0.92096 0.91281 0.92220 0.88612 0.87648 0.90141 0.90787 0.73357 0.82622 0.85143 0.96749 0.96874 0.92367 0.85296 0.82706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.19 9.85 71.98 0.71 -0.48 16 2 C -0.12 -1.52 2.70 -52.16 -0.14 -1.66 16 3 C -0.13 -1.65 8.86 71.98 0.64 -1.01 16 4 C -0.17 -2.03 9.47 30.62 0.29 -1.74 16 5 C -0.16 -2.03 5.62 -10.79 -0.06 -2.09 16 6 H 0.12 1.31 7.98 -2.39 -0.02 1.29 16 7 C 0.14 2.25 5.58 86.38 0.48 2.73 16 8 N -1.10 -18.88 6.00 -187.49 -1.12 -20.00 16 9 S 2.73 68.47 5.74 -56.49 -0.32 68.14 16 10 O -0.99 -29.30 17.28 -128.00 -2.21 -31.51 16 11 O -0.98 -29.22 16.75 -128.00 -2.14 -31.36 16 12 C -0.70 -20.57 5.95 22.27 0.13 -20.44 16 13 C -0.02 -0.61 9.52 22.27 0.21 -0.39 16 14 C -0.15 -5.65 9.70 22.27 0.22 -5.44 16 15 C 0.00 -0.12 5.07 -19.87 -0.10 -0.22 16 16 C 0.05 2.45 5.10 29.10 0.15 2.60 16 17 C -0.53 -29.66 9.09 25.60 0.23 -29.43 16 18 H 0.05 2.96 7.74 -2.91 -0.02 2.94 16 19 C 0.01 0.55 5.46 84.66 0.46 1.01 16 20 N -0.93 -54.08 13.29 21.45 0.28 -53.79 16 21 Si 0.96 43.62 29.54 68.60 2.03 45.64 16 22 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 23 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 24 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 25 C -0.16 -5.81 9.70 22.27 0.22 -5.59 16 26 C -0.02 -0.59 9.52 22.27 0.21 -0.37 16 27 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 28 H 0.07 0.63 7.92 -2.39 -0.02 0.61 16 29 H 0.06 0.57 7.90 -2.38 -0.02 0.55 16 30 H 0.06 0.78 7.90 -2.39 -0.02 0.76 16 31 H 0.07 0.79 7.92 -2.39 -0.02 0.77 16 32 H 0.06 0.83 7.83 -2.39 -0.02 0.81 16 33 H 0.10 1.20 7.94 -2.38 -0.02 1.19 16 34 H 0.11 1.04 8.05 -2.39 -0.02 1.02 16 35 H 0.08 1.33 7.48 -2.38 -0.02 1.31 16 36 H 0.07 1.19 7.77 -2.39 -0.02 1.17 16 37 H 0.43 5.34 8.55 -96.74 -0.83 4.51 16 38 H 0.16 3.89 7.61 -2.91 -0.02 3.86 16 39 H 0.13 4.60 8.06 -2.91 -0.02 4.58 16 40 H 0.01 0.77 8.08 -2.39 -0.02 0.75 16 41 H 0.01 0.70 8.09 -2.38 -0.02 0.68 16 42 H 0.27 14.62 8.31 -92.71 -0.77 13.85 16 43 H 0.13 4.64 8.06 -2.91 -0.02 4.62 16 44 H 0.16 3.99 7.62 -2.91 -0.02 3.97 16 Total: -1.00 -69.76 380.08 0.32 -69.44 By element: Atomic # 1 Polarization: 15.81 SS G_CDS: 0.16 Total: 15.98 kcal Atomic # 6 Polarization: -66.18 SS G_CDS: 3.65 Total: -62.53 kcal Atomic # 7 Polarization: -72.96 SS G_CDS: -0.84 Total: -73.80 kcal Atomic # 8 Polarization: -58.52 SS G_CDS: -4.36 Total: -62.88 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 2.03 Total: 45.64 kcal Atomic # 16 Polarization: 68.47 SS G_CDS: -0.32 Total: 68.14 kcal Total: -69.76 0.32 -69.44 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885010947.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.984 kcal (2) G-P(sol) polarization free energy of solvation -69.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds