Wall clock time and date at job start Tue Mar 31 2020 13:44:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 115.55130 * 2 1 4 4 C 1.53006 * 109.46623 * 34.33389 * 3 2 1 5 5 N 1.46500 * 109.46998 * 179.97438 * 4 3 2 6 6 S 1.65598 * 120.00283 * 165.00335 * 5 4 3 7 7 O 1.42095 * 106.40200 * 178.54147 * 6 5 4 8 8 O 1.42102 * 106.39853 * 311.45909 * 6 5 4 9 9 C 1.76194 * 107.21869 * 64.99577 * 6 5 4 10 10 C 1.38238 * 120.00373 * 269.72829 * 9 6 5 11 11 C 1.38229 * 120.00027 * 179.76377 * 10 9 6 12 12 C 1.38235 * 119.99890 * 0.49125 * 11 10 9 13 13 C 1.50699 * 119.99734 * 179.76505 * 12 11 10 14 14 C 1.50707 * 109.47219 * 270.01948 * 13 12 11 15 15 H 1.07996 * 119.99780 * 0.02562 * 14 13 12 16 16 C 1.37874 * 120.00021 * 180.02562 * 14 13 12 17 17 N 1.31522 * 120.00234 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 120.00271 * 180.02562 * 16 14 13 19 19 H 1.48512 * 109.46738 * 359.97438 * 18 16 14 20 20 H 1.48488 * 109.47218 * 119.99826 * 18 16 14 21 21 H 1.48500 * 109.47240 * 240.00296 * 18 16 14 22 22 C 1.38233 * 120.00200 * 359.78784 * 12 11 10 23 23 C 1.38233 * 119.99747 * 359.95488 * 22 12 11 24 24 C 1.53006 * 117.52053 * 145.70840 * 2 1 3 25 25 C 1.53000 * 60.00083 * 107.47806 * 24 2 1 26 26 H 1.09000 * 109.47245 * 85.57870 * 1 2 3 27 27 H 1.09000 * 109.46674 * 205.57878 * 1 2 3 28 28 H 1.09000 * 109.47200 * 325.57529 * 1 2 3 29 29 H 1.09000 * 109.47486 * 274.33560 * 3 2 1 30 30 H 1.09001 * 109.47362 * 154.32838 * 3 2 1 31 31 H 1.08993 * 109.46955 * 300.00075 * 4 3 2 32 32 H 1.09000 * 109.47050 * 59.99904 * 4 3 2 33 33 H 0.97004 * 119.99709 * 345.00122 * 5 4 3 34 34 H 1.07997 * 119.99555 * 0.02562 * 10 9 6 35 35 H 1.08002 * 119.99947 * 180.25422 * 11 10 9 36 36 H 1.09001 * 109.47387 * 30.01968 * 13 12 11 37 37 H 1.09008 * 109.47322 * 150.02298 * 13 12 11 38 38 H 0.96991 * 120.00135 * 179.97438 * 17 16 14 39 39 H 1.08004 * 120.00175 * 179.97438 * 22 12 11 40 40 H 1.08001 * 119.99530 * 180.02562 * 23 22 12 41 41 H 1.08996 * 117.49984 * 214.96885 * 24 2 1 42 42 H 1.09004 * 117.49682 * 359.97438 * 24 2 1 43 43 H 1.08997 * 117.49978 * 252.51236 * 25 24 2 44 44 H 1.09001 * 117.49786 * 107.48741 * 25 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1899 1.3804 0.0000 4 6 1.3351 2.3542 0.8136 5 7 1.9672 3.6758 0.8142 6 16 1.1037 5.0066 1.2892 7 8 1.9941 6.1112 1.2119 8 8 -0.1319 4.9538 0.5893 9 6 0.7182 4.7964 2.9956 10 6 -0.4540 4.1646 3.3667 11 6 -0.7540 3.9954 4.7054 12 6 0.1133 4.4671 5.6731 13 6 -0.2163 4.2873 7.1325 14 6 -1.0057 5.4753 7.6193 15 1 -1.2451 6.2797 6.9396 16 6 -1.4223 5.5351 8.9322 17 7 -1.1303 4.5556 9.7601 18 14 -2.4013 7.0071 9.5355 19 1 -2.5954 7.9645 8.4168 20 1 -3.7241 6.5516 10.0330 21 1 -1.6620 7.6760 10.6360 22 6 1.2827 5.1040 5.3019 23 6 1.5852 5.2684 3.9632 24 6 2.2370 -1.1211 0.7645 25 6 2.2365 -1.1207 -0.7655 26 1 -0.3634 0.0792 -1.0246 27 1 -0.3633 -0.9270 0.4437 28 1 -0.3633 0.8477 0.5810 29 1 2.2766 1.7417 -1.0247 30 1 3.1823 1.3087 0.4452 31 1 0.3428 2.4258 0.3685 32 1 1.2485 1.9928 1.8383 33 1 2.8917 3.7713 0.5364 34 1 -1.1333 3.7995 2.6107 35 1 -1.6678 3.4982 4.9954 36 1 -0.8071 3.3805 7.2626 37 1 0.7069 4.2049 7.7061 38 1 -1.4230 4.5979 10.6838 39 1 1.9601 5.4728 6.0580 40 1 2.4991 5.7656 3.6733 41 1 3.1722 -0.8752 1.2675 42 1 1.6121 -1.8587 1.2680 43 1 1.6112 -1.8582 -1.2687 44 1 3.1713 -0.8745 -1.2691 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885153020.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:44:12 Heat of formation + Delta-G solvation = -45.526192 kcal Electronic energy + Delta-G solvation = -24627.701398 eV Core-core repulsion = 21057.959761 eV Total energy + Delta-G solvation = -3569.741638 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -38.92832 -38.79570 -37.14127 -35.76914 -35.50282 -33.68353 -31.56294 -30.58308 -30.26397 -28.17274 -27.43594 -23.77141 -23.66280 -22.69100 -22.32833 -20.91448 -19.72260 -18.97843 -17.83761 -17.22499 -16.47731 -16.42179 -15.64749 -15.41302 -15.12055 -15.05270 -14.37787 -14.36824 -14.15315 -13.75408 -13.37016 -13.11826 -12.87116 -12.82420 -12.46902 -12.26035 -12.14295 -12.00214 -11.93057 -11.82455 -11.70969 -11.65689 -11.49659 -11.38213 -10.94560 -10.93480 -10.53314 -10.49658 -10.37543 -9.94532 -9.78518 -9.67872 -9.54012 -8.59629 -8.54893 -8.38945 -6.18068 -4.22989 0.51066 1.32467 1.79070 3.06225 3.22655 3.30755 3.36074 3.41462 3.76365 4.10929 4.27226 4.36642 4.39941 4.49496 4.59427 4.66806 4.92301 5.01225 5.15223 5.20999 5.22087 5.24995 5.31827 5.34051 5.49938 5.57426 5.61109 5.71712 5.74181 5.79526 5.80541 5.83396 5.90269 5.91078 6.02528 6.24485 6.32597 6.50183 6.81233 6.83569 6.90394 7.28572 7.42546 7.58184 7.77325 8.12401 8.82137 9.42131 10.92016 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.015265 B = 0.002941 C = 0.002633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1833.873055 B = 9517.086048 C =10633.270447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.127 4.127 3 C -0.087 4.087 4 C 0.115 3.885 5 N -1.121 6.121 6 S 2.699 3.301 7 O -0.967 6.967 8 O -0.965 6.965 9 C -0.704 4.704 10 C -0.025 4.025 11 C -0.145 4.145 12 C 0.027 3.973 13 C 0.039 3.961 14 C -0.517 4.517 15 H 0.059 0.941 16 C 0.060 3.940 17 N -0.891 5.891 18 Si 0.898 3.102 19 H -0.271 1.271 20 H -0.282 1.282 21 H -0.282 1.282 22 C -0.146 4.146 23 C -0.022 4.022 24 C -0.174 4.174 25 C -0.175 4.175 26 H 0.061 0.939 27 H 0.059 0.941 28 H 0.071 0.929 29 H 0.075 0.925 30 H 0.072 0.928 31 H 0.085 0.915 32 H 0.070 0.930 33 H 0.415 0.585 34 H 0.129 0.871 35 H 0.129 0.871 36 H 0.035 0.965 37 H 0.035 0.965 38 H 0.264 0.736 39 H 0.128 0.872 40 H 0.129 0.871 41 H 0.094 0.906 42 H 0.095 0.905 43 H 0.094 0.906 44 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.514 -10.020 -19.567 23.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.127 4.127 3 C -0.126 4.126 4 C -0.011 4.011 5 N -0.880 5.880 6 S 2.792 3.208 7 O -0.957 6.957 8 O -0.955 6.955 9 C -0.793 4.793 10 C -0.044 4.044 11 C -0.164 4.164 12 C 0.026 3.974 13 C 0.002 3.998 14 C -0.555 4.555 15 H 0.078 0.922 16 C -0.142 4.142 17 N -0.530 5.530 18 Si 0.725 3.275 19 H -0.196 1.196 20 H -0.208 1.208 21 H -0.208 1.208 22 C -0.165 4.165 23 C -0.041 4.041 24 C -0.211 4.211 25 C -0.213 4.213 26 H 0.080 0.920 27 H 0.078 0.922 28 H 0.090 0.910 29 H 0.093 0.907 30 H 0.091 0.909 31 H 0.103 0.897 32 H 0.088 0.912 33 H 0.249 0.751 34 H 0.147 0.853 35 H 0.147 0.853 36 H 0.053 0.947 37 H 0.053 0.947 38 H 0.073 0.927 39 H 0.146 0.854 40 H 0.147 0.853 41 H 0.113 0.887 42 H 0.113 0.887 43 H 0.112 0.888 44 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 7.059 -9.391 -19.873 23.085 hybrid contribution -0.107 0.398 1.148 1.220 sum 6.952 -8.992 -18.724 21.904 Atomic orbital electron populations 1.21529 0.91750 1.02762 1.02368 1.21419 0.95116 0.90499 1.05710 1.21277 0.98551 0.91989 1.00777 1.21456 0.97092 0.81530 1.01040 1.55591 1.26419 1.22407 1.83622 1.01513 0.73163 0.72114 0.74054 1.93565 1.65650 1.49261 1.87248 1.93554 1.44254 1.86124 1.71534 1.30310 1.06391 1.19122 1.23516 1.20779 0.93355 0.93198 0.97094 1.21241 1.00502 1.02639 0.92040 1.21115 0.90490 0.86794 0.98965 1.18546 0.98055 0.98369 0.84816 1.21010 1.34643 1.04448 0.95357 0.92231 1.25006 0.96030 0.96468 0.96664 1.69956 1.45979 1.31820 1.05236 0.86428 0.79718 0.82439 0.78865 1.19558 1.20788 1.20800 1.21248 0.98514 1.01343 0.95379 1.20768 0.96893 0.93558 0.92909 1.23200 1.02487 1.01167 0.94253 1.23033 1.02368 1.01243 0.94609 0.91973 0.92224 0.91049 0.90673 0.90931 0.89699 0.91185 0.75097 0.85284 0.85343 0.94705 0.94721 0.92682 0.85357 0.85274 0.88745 0.88695 0.88792 0.88883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.92 9.49 37.16 0.35 -0.57 16 2 C -0.13 -0.92 2.47 -154.50 -0.38 -1.30 16 3 C -0.09 -0.62 5.54 -26.73 -0.15 -0.77 16 4 C 0.11 1.01 5.23 -4.04 -0.02 0.99 16 5 N -1.12 -10.82 6.00 -10.61 -0.06 -10.88 16 6 S 2.70 36.82 5.74 -107.50 -0.62 36.20 16 7 O -0.97 -15.48 17.28 -57.17 -0.99 -16.47 16 8 O -0.96 -15.35 16.75 -57.17 -0.96 -16.31 16 9 C -0.70 -10.96 5.95 -39.58 -0.24 -11.20 16 10 C -0.02 -0.40 9.52 -39.58 -0.38 -0.77 16 11 C -0.15 -2.66 9.70 -39.59 -0.38 -3.05 16 12 C 0.03 0.55 5.07 -104.63 -0.53 0.02 16 13 C 0.04 0.95 5.10 -29.03 -0.15 0.80 16 14 C -0.52 -13.98 9.09 -34.44 -0.31 -14.30 16 15 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 16 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 17 N -0.89 -25.47 13.29 55.43 0.74 -24.74 16 18 Si 0.90 21.11 29.54 -169.99 -5.02 16.08 16 19 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 20 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 21 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 22 C -0.15 -2.71 9.70 -39.59 -0.38 -3.09 16 23 C -0.02 -0.36 9.52 -39.58 -0.38 -0.73 16 24 C -0.17 -1.22 9.82 -26.73 -0.26 -1.48 16 25 C -0.18 -1.14 9.97 -26.73 -0.27 -1.40 16 26 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.06 0.40 7.90 -51.93 -0.41 -0.01 16 28 H 0.07 0.53 5.59 -51.93 -0.29 0.24 16 29 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.07 0.47 7.90 -51.93 -0.41 0.06 16 31 H 0.08 0.77 6.06 -51.93 -0.31 0.45 16 32 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.42 3.07 8.65 -34.47 -0.30 2.77 16 34 H 0.13 1.75 7.61 -52.49 -0.40 1.35 16 35 H 0.13 2.23 8.06 -52.49 -0.42 1.80 16 36 H 0.03 0.88 8.09 -51.93 -0.42 0.46 16 37 H 0.03 0.88 8.09 -51.92 -0.42 0.46 16 38 H 0.26 7.09 8.31 -40.82 -0.34 6.76 16 39 H 0.13 2.26 8.06 -52.48 -0.42 1.84 16 40 H 0.13 1.81 7.62 -52.49 -0.40 1.41 16 41 H 0.09 0.64 8.05 -51.93 -0.42 0.22 16 42 H 0.09 0.64 8.05 -51.93 -0.42 0.23 16 43 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.09 0.55 8.14 -51.93 -0.42 0.12 16 LS Contribution 378.03 15.07 5.70 5.70 Total: -1.00 -32.63 378.03 -11.49 -44.12 By element: Atomic # 1 Polarization: 8.28 SS G_CDS: -6.70 Total: 1.58 kcal Atomic # 6 Polarization: -31.71 SS G_CDS: -3.57 Total: -35.28 kcal Atomic # 7 Polarization: -36.29 SS G_CDS: 0.67 Total: -35.62 kcal Atomic # 8 Polarization: -30.83 SS G_CDS: -1.95 Total: -32.78 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.08 kcal Atomic # 16 Polarization: 36.82 SS G_CDS: -0.62 Total: 36.20 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -32.63 -11.49 -44.12 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885153020.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.406 kcal (2) G-P(sol) polarization free energy of solvation -32.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds