Wall clock time and date at job start Tue Mar 31 2020 13:44:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 115.55130 * 2 1 4 4 C 1.53006 * 109.46623 * 34.33389 * 3 2 1 5 5 N 1.46500 * 109.46998 * 179.97438 * 4 3 2 6 6 S 1.65598 * 120.00283 * 165.00335 * 5 4 3 7 7 O 1.42095 * 106.40200 * 178.54147 * 6 5 4 8 8 O 1.42102 * 106.39853 * 311.45909 * 6 5 4 9 9 C 1.76194 * 107.21869 * 64.99577 * 6 5 4 10 10 C 1.38238 * 120.00373 * 269.72829 * 9 6 5 11 11 C 1.38229 * 120.00027 * 179.76377 * 10 9 6 12 12 C 1.38235 * 119.99890 * 0.49125 * 11 10 9 13 13 C 1.50699 * 119.99734 * 179.76505 * 12 11 10 14 14 C 1.50707 * 109.47219 * 270.01948 * 13 12 11 15 15 H 1.07996 * 119.99780 * 0.02562 * 14 13 12 16 16 C 1.37874 * 120.00021 * 180.02562 * 14 13 12 17 17 N 1.31522 * 120.00234 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 120.00271 * 180.02562 * 16 14 13 19 19 H 1.48512 * 109.46738 * 359.97438 * 18 16 14 20 20 H 1.48488 * 109.47218 * 119.99826 * 18 16 14 21 21 H 1.48500 * 109.47240 * 240.00296 * 18 16 14 22 22 C 1.38233 * 120.00200 * 359.78784 * 12 11 10 23 23 C 1.38233 * 119.99747 * 359.95488 * 22 12 11 24 24 C 1.53006 * 117.52053 * 145.70840 * 2 1 3 25 25 C 1.53000 * 60.00083 * 107.47806 * 24 2 1 26 26 H 1.09000 * 109.47245 * 85.57870 * 1 2 3 27 27 H 1.09000 * 109.46674 * 205.57878 * 1 2 3 28 28 H 1.09000 * 109.47200 * 325.57529 * 1 2 3 29 29 H 1.09000 * 109.47486 * 274.33560 * 3 2 1 30 30 H 1.09001 * 109.47362 * 154.32838 * 3 2 1 31 31 H 1.08993 * 109.46955 * 300.00075 * 4 3 2 32 32 H 1.09000 * 109.47050 * 59.99904 * 4 3 2 33 33 H 0.97004 * 119.99709 * 345.00122 * 5 4 3 34 34 H 1.07997 * 119.99555 * 0.02562 * 10 9 6 35 35 H 1.08002 * 119.99947 * 180.25422 * 11 10 9 36 36 H 1.09001 * 109.47387 * 30.01968 * 13 12 11 37 37 H 1.09008 * 109.47322 * 150.02298 * 13 12 11 38 38 H 0.96991 * 120.00135 * 179.97438 * 17 16 14 39 39 H 1.08004 * 120.00175 * 179.97438 * 22 12 11 40 40 H 1.08001 * 119.99530 * 180.02562 * 23 22 12 41 41 H 1.08996 * 117.49984 * 214.96885 * 24 2 1 42 42 H 1.09004 * 117.49682 * 359.97438 * 24 2 1 43 43 H 1.08997 * 117.49978 * 252.51236 * 25 24 2 44 44 H 1.09001 * 117.49786 * 107.48741 * 25 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1899 1.3804 0.0000 4 6 1.3351 2.3542 0.8136 5 7 1.9672 3.6758 0.8142 6 16 1.1037 5.0066 1.2892 7 8 1.9941 6.1112 1.2119 8 8 -0.1319 4.9538 0.5893 9 6 0.7182 4.7964 2.9956 10 6 -0.4540 4.1646 3.3667 11 6 -0.7540 3.9954 4.7054 12 6 0.1133 4.4671 5.6731 13 6 -0.2163 4.2873 7.1325 14 6 -1.0057 5.4753 7.6193 15 1 -1.2451 6.2797 6.9396 16 6 -1.4223 5.5351 8.9322 17 7 -1.1303 4.5556 9.7601 18 14 -2.4013 7.0071 9.5355 19 1 -2.5954 7.9645 8.4168 20 1 -3.7241 6.5516 10.0330 21 1 -1.6620 7.6760 10.6360 22 6 1.2827 5.1040 5.3019 23 6 1.5852 5.2684 3.9632 24 6 2.2370 -1.1211 0.7645 25 6 2.2365 -1.1207 -0.7655 26 1 -0.3634 0.0792 -1.0246 27 1 -0.3633 -0.9270 0.4437 28 1 -0.3633 0.8477 0.5810 29 1 2.2766 1.7417 -1.0247 30 1 3.1823 1.3087 0.4452 31 1 0.3428 2.4258 0.3685 32 1 1.2485 1.9928 1.8383 33 1 2.8917 3.7713 0.5364 34 1 -1.1333 3.7995 2.6107 35 1 -1.6678 3.4982 4.9954 36 1 -0.8071 3.3805 7.2626 37 1 0.7069 4.2049 7.7061 38 1 -1.4230 4.5979 10.6838 39 1 1.9601 5.4728 6.0580 40 1 2.4991 5.7656 3.6733 41 1 3.1722 -0.8752 1.2675 42 1 1.6121 -1.8587 1.2680 43 1 1.6112 -1.8582 -1.2687 44 1 3.1713 -0.8745 -1.2691 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885153020.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:44:11 Heat of formation + Delta-G solvation = -65.388553 kcal Electronic energy + Delta-G solvation = -24628.562695 eV Core-core repulsion = 21057.959761 eV Total energy + Delta-G solvation = -3570.602934 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.22957 -39.46966 -38.33194 -36.96888 -36.27134 -35.59521 -33.31677 -31.95643 -30.91373 -29.24667 -28.74132 -25.59700 -24.39333 -23.69195 -23.18813 -22.47442 -20.68487 -19.71947 -18.97146 -18.58801 -18.28029 -17.37570 -16.86441 -16.42835 -16.20483 -16.02309 -15.89285 -15.54402 -15.25117 -14.70069 -14.63986 -14.44742 -13.99356 -13.88639 -13.63467 -13.41448 -13.39537 -13.23747 -13.15357 -13.00767 -12.83875 -12.69096 -12.66596 -12.52508 -12.21135 -12.11121 -12.03641 -11.94673 -11.65476 -11.43369 -10.92688 -10.66293 -10.54631 -10.35313 -9.95708 -9.94569 -8.27731 -6.40353 -0.61284 -0.05833 0.40371 1.36841 1.38398 1.51032 2.02468 2.34484 2.57001 2.83245 2.89500 3.04961 3.32505 3.75192 3.83049 3.89689 3.98189 4.05302 4.10437 4.16341 4.30844 4.40853 4.46514 4.48372 4.62706 4.66151 4.82165 4.85703 4.91584 4.93341 5.01362 5.10169 5.11296 5.17966 5.22266 5.24974 5.25998 5.30062 5.33405 5.33868 5.48348 5.66867 5.86544 5.92815 6.09663 6.12296 6.71720 7.28850 8.82563 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.015265 B = 0.002941 C = 0.002633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1833.873055 B = 9517.086048 C =10633.270447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.134 4.134 3 C -0.083 4.083 4 C 0.107 3.893 5 N -1.104 6.104 6 S 2.727 3.273 7 O -0.986 6.986 8 O -0.982 6.982 9 C -0.701 4.701 10 C -0.019 4.019 11 C -0.154 4.154 12 C -0.003 4.003 13 C 0.048 3.952 14 C -0.532 4.532 15 H 0.053 0.947 16 C 0.009 3.991 17 N -0.925 5.925 18 Si 0.964 3.036 19 H -0.268 1.268 20 H -0.275 1.275 21 H -0.275 1.275 22 C -0.156 4.156 23 C -0.019 4.019 24 C -0.181 4.181 25 C -0.169 4.169 26 H 0.065 0.935 27 H 0.059 0.941 28 H 0.067 0.933 29 H 0.083 0.917 30 H 0.082 0.918 31 H 0.085 0.915 32 H 0.070 0.930 33 H 0.429 0.571 34 H 0.157 0.843 35 H 0.130 0.870 36 H 0.014 0.986 37 H 0.013 0.987 38 H 0.267 0.733 39 H 0.129 0.871 40 H 0.155 0.845 41 H 0.096 0.904 42 H 0.093 0.907 43 H 0.097 0.903 44 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.927 -9.736 -21.655 25.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.135 4.135 3 C -0.121 4.121 4 C -0.019 4.019 5 N -0.867 5.867 6 S 2.817 3.183 7 O -0.977 6.977 8 O -0.972 6.972 9 C -0.788 4.788 10 C -0.038 4.038 11 C -0.173 4.173 12 C -0.004 4.004 13 C 0.011 3.989 14 C -0.570 4.570 15 H 0.071 0.929 16 C -0.190 4.190 17 N -0.565 5.565 18 Si 0.788 3.212 19 H -0.192 1.192 20 H -0.200 1.200 21 H -0.201 1.201 22 C -0.175 4.175 23 C -0.038 4.038 24 C -0.218 4.218 25 C -0.206 4.206 26 H 0.084 0.916 27 H 0.078 0.922 28 H 0.086 0.914 29 H 0.101 0.899 30 H 0.100 0.900 31 H 0.103 0.897 32 H 0.088 0.912 33 H 0.266 0.734 34 H 0.174 0.826 35 H 0.148 0.852 36 H 0.032 0.968 37 H 0.031 0.969 38 H 0.076 0.924 39 H 0.147 0.853 40 H 0.173 0.827 41 H 0.114 0.886 42 H 0.111 0.889 43 H 0.116 0.884 44 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 7.480 -9.106 -21.944 24.908 hybrid contribution -0.182 0.229 1.673 1.698 sum 7.298 -8.877 -20.271 23.302 Atomic orbital electron populations 1.21562 0.91991 1.02664 1.02565 1.21457 0.95071 0.90701 1.06309 1.21256 0.98567 0.91348 1.00974 1.21647 0.97551 0.81123 1.01565 1.55217 1.27044 1.21759 1.82667 1.00702 0.72613 0.72190 0.72795 1.93538 1.65988 1.51003 1.87120 1.93535 1.45687 1.86662 1.71348 1.30799 1.05733 1.17274 1.24962 1.21044 0.93857 0.92443 0.96506 1.21305 1.00333 1.02835 0.92829 1.20817 0.92576 0.89903 0.97073 1.18269 0.96275 0.96719 0.87631 1.21316 1.34952 1.05102 0.95656 0.92857 1.25861 0.97016 0.99213 0.96862 1.70059 1.47104 1.33654 1.05660 0.85411 0.78406 0.79010 0.78329 1.19227 1.20001 1.20064 1.21306 0.97980 1.01487 0.96743 1.21023 0.97886 0.93045 0.91868 1.23252 1.02578 1.01204 0.94803 1.23093 1.02581 1.00720 0.94246 0.91594 0.92164 0.91420 0.89855 0.89988 0.89669 0.91158 0.73392 0.82561 0.85177 0.96780 0.96896 0.92373 0.85332 0.82713 0.88554 0.88887 0.88415 0.88092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.70 9.49 71.98 0.68 -1.01 16 2 C -0.13 -1.68 2.47 -52.18 -0.13 -1.81 16 3 C -0.08 -0.96 5.54 30.60 0.17 -0.79 16 4 C 0.11 1.62 5.23 86.38 0.45 2.07 16 5 N -1.10 -18.10 6.00 -187.49 -1.12 -19.22 16 6 S 2.73 67.41 5.74 -56.49 -0.32 67.08 16 7 O -0.99 -29.01 17.28 -128.00 -2.21 -31.22 16 8 O -0.98 -28.76 16.75 -128.00 -2.14 -30.90 16 9 C -0.70 -20.46 5.95 22.27 0.13 -20.32 16 10 C -0.02 -0.59 9.52 22.27 0.21 -0.38 16 11 C -0.15 -5.67 9.70 22.27 0.22 -5.45 16 12 C 0.00 -0.14 5.07 -19.87 -0.10 -0.24 16 13 C 0.05 2.45 5.10 29.10 0.15 2.60 16 14 C -0.53 -29.66 9.09 25.60 0.23 -29.43 16 15 H 0.05 2.96 7.74 -2.91 -0.02 2.94 16 16 C 0.01 0.53 5.46 84.65 0.46 0.99 16 17 N -0.93 -54.15 13.29 21.45 0.28 -53.87 16 18 Si 0.96 43.64 29.54 68.60 2.03 45.67 16 19 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 20 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 21 H -0.28 -12.08 7.11 99.48 0.71 -11.38 16 22 C -0.16 -5.82 9.70 22.27 0.22 -5.61 16 23 C -0.02 -0.59 9.52 22.27 0.21 -0.38 16 24 C -0.18 -2.25 9.82 30.60 0.30 -1.95 16 25 C -0.17 -1.84 9.97 30.60 0.31 -1.54 16 26 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 27 H 0.06 0.75 7.90 -2.39 -0.02 0.73 16 28 H 0.07 0.91 5.59 -2.39 -0.01 0.90 16 29 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.08 0.81 7.90 -2.39 -0.02 0.80 16 31 H 0.09 1.33 6.06 -2.39 -0.01 1.31 16 32 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.43 4.93 8.65 -96.74 -0.84 4.10 16 34 H 0.16 3.87 7.61 -2.91 -0.02 3.85 16 35 H 0.13 4.60 8.06 -2.91 -0.02 4.58 16 36 H 0.01 0.75 8.09 -2.39 -0.02 0.73 16 37 H 0.01 0.69 8.09 -2.38 -0.02 0.67 16 38 H 0.27 14.63 8.31 -92.71 -0.77 13.86 16 39 H 0.13 4.64 8.06 -2.91 -0.02 4.61 16 40 H 0.16 3.97 7.62 -2.91 -0.02 3.95 16 41 H 0.10 1.14 8.05 -2.39 -0.02 1.12 16 42 H 0.09 1.17 8.05 -2.39 -0.02 1.15 16 43 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 44 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 Total: -1.00 -69.92 378.03 0.18 -69.74 By element: Atomic # 1 Polarization: 15.82 SS G_CDS: 0.16 Total: 15.98 kcal Atomic # 6 Polarization: -66.78 SS G_CDS: 3.51 Total: -63.26 kcal Atomic # 7 Polarization: -72.25 SS G_CDS: -0.84 Total: -73.09 kcal Atomic # 8 Polarization: -57.77 SS G_CDS: -4.36 Total: -62.12 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 2.03 Total: 45.67 kcal Atomic # 16 Polarization: 67.41 SS G_CDS: -0.32 Total: 67.08 kcal Total: -69.92 0.18 -69.74 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885153020.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.356 kcal (2) G-P(sol) polarization free energy of solvation -69.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.745 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds