Wall clock time and date at job start Tue Mar 31 2020 14:29:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 112.90752 * 2 1 4 4 C 1.53780 * 113.61447 * 228.75197 * 2 1 3 5 5 C 1.53781 * 87.08318 * 270.88304 * 4 2 1 6 6 C 1.53776 * 113.61595 * 131.25706 * 2 1 3 7 7 H 1.09002 * 113.68898 * 203.67837 * 6 2 1 8 8 N 1.46501 * 113.61393 * 334.56280 * 6 2 1 9 9 S 1.65599 * 120.00418 * 212.00440 * 8 6 2 10 10 O 1.42100 * 106.40241 * 311.46108 * 9 8 6 11 11 O 1.42096 * 106.40379 * 178.53729 * 9 8 6 12 12 C 1.76199 * 107.21658 * 65.00023 * 9 8 6 13 13 C 1.38238 * 120.00251 * 269.72679 * 12 9 8 14 14 C 1.38238 * 120.00111 * 179.78510 * 13 12 9 15 15 C 1.38229 * 119.99700 * 0.46904 * 14 13 12 16 16 C 1.50706 * 119.99458 * 179.78524 * 15 14 13 17 17 C 1.50696 * 109.47446 * 269.97653 * 16 15 14 18 18 H 1.08006 * 120.00067 * 0.02562 * 17 16 15 19 19 C 1.37871 * 120.00525 * 180.02562 * 17 16 15 20 20 N 1.31514 * 119.99567 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00565 * 179.97438 * 19 17 16 22 22 H 1.48505 * 109.46655 * 0.02562 * 21 19 17 23 23 H 1.48498 * 109.47090 * 119.99687 * 21 19 17 24 24 H 1.48495 * 109.47121 * 240.00318 * 21 19 17 25 25 C 1.38237 * 120.00404 * 359.76549 * 15 14 13 26 26 C 1.38234 * 120.00019 * 90.00010 * 12 9 8 27 27 H 1.09001 * 109.46916 * 288.74472 * 1 2 3 28 28 H 1.08998 * 109.47130 * 48.74307 * 1 2 3 29 29 H 1.08999 * 109.47184 * 168.74587 * 1 2 3 30 30 H 1.09001 * 109.47537 * 191.25062 * 3 2 1 31 31 H 1.09003 * 109.47357 * 311.25072 * 3 2 1 32 32 H 1.09000 * 109.47229 * 71.25334 * 3 2 1 33 33 H 1.09000 * 113.62102 * 156.33317 * 4 2 1 34 34 H 1.09006 * 113.69284 * 25.44198 * 4 2 1 35 35 H 1.08998 * 113.61451 * 220.01660 * 5 4 2 36 36 H 1.09001 * 113.68883 * 89.12203 * 5 4 2 37 37 H 0.97001 * 119.99713 * 32.00646 * 8 6 2 38 38 H 1.08004 * 119.99572 * 0.02562 * 13 12 9 39 39 H 1.07999 * 119.99919 * 180.25463 * 14 13 12 40 40 H 1.08995 * 109.47333 * 29.98183 * 16 15 14 41 41 H 1.09005 * 109.46615 * 149.97652 * 16 15 14 42 42 H 0.97006 * 120.00351 * 180.02562 * 20 19 17 43 43 H 1.07996 * 119.99812 * 180.02562 * 25 15 14 44 44 H 1.07999 * 120.00005 * 359.97438 * 26 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1255 1.4093 0.0000 4 6 2.1460 -0.9290 -1.0594 5 6 2.0930 -2.0426 -0.0001 6 6 2.1461 -0.9291 1.0592 7 1 3.1591 -0.6509 1.3499 8 7 1.2705 -1.1705 2.2087 9 16 1.9241 -1.4191 3.7098 10 8 2.9484 -2.3902 3.5457 11 8 0.8302 -1.5862 4.6011 12 6 2.7273 0.0761 4.1830 13 6 4.0585 0.2752 3.8680 14 6 4.6875 1.4501 4.2353 15 6 3.9879 2.4218 4.9261 16 6 4.6750 3.7006 5.3308 17 6 5.2895 3.5304 6.6961 18 1 5.1927 2.5901 7.2186 19 6 5.9754 4.5750 7.2786 20 7 6.0929 5.7202 6.6427 21 14 6.7366 4.3643 8.9714 22 1 6.4639 2.9921 9.4693 23 1 8.2038 4.5763 8.8843 24 1 6.1476 5.3567 9.9060 25 6 2.6580 2.2207 5.2453 26 6 2.0279 1.0477 4.8741 27 1 -0.3633 0.3302 0.9732 28 1 -0.3633 0.6777 -0.7725 29 1 -0.3633 -1.0079 -0.2006 30 1 3.1954 1.3517 -0.2005 31 1 1.6428 2.0078 -0.7726 32 1 1.9628 1.8726 0.9731 33 1 3.1591 -0.6499 -1.3491 34 1 1.4956 -1.1093 -1.9154 35 1 2.9717 -2.6875 -0.0002 36 1 1.1574 -2.6019 0.0008 37 1 0.3078 -1.1848 2.0905 38 1 4.6061 -0.4856 3.3315 39 1 5.7264 1.6074 3.9856 40 1 5.4555 3.9382 4.6080 41 1 3.9467 4.5112 5.3585 42 1 6.5758 6.4551 7.0522 43 1 2.1114 2.9801 5.7847 44 1 0.9889 0.8905 5.1237 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885188461.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:29:20 Heat of formation + Delta-G solvation = -50.242976 kcal Electronic energy + Delta-G solvation = -25489.975596 eV Core-core repulsion = 21920.029424 eV Total energy + Delta-G solvation = -3569.946173 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.19234 -38.80587 -37.09473 -35.73930 -33.69569 -33.41226 -31.56647 -30.80606 -30.58654 -27.73876 -27.42826 -24.80952 -23.73590 -22.68446 -22.34784 -20.90632 -19.52004 -18.90200 -17.82137 -17.11766 -16.65056 -16.45181 -15.37074 -15.15948 -15.08424 -14.54884 -14.40000 -14.36957 -13.82834 -13.44422 -13.29565 -13.07674 -12.86119 -12.72328 -12.52935 -12.26501 -12.23958 -12.04620 -11.92294 -11.86563 -11.70643 -11.68990 -11.49942 -11.04302 -10.93981 -10.92755 -10.65335 -10.50168 -10.46266 -10.37896 -9.75536 -9.66418 -9.41846 -8.59870 -8.55103 -8.38851 -6.18267 -4.23187 0.52945 1.32542 1.78591 3.08606 3.22560 3.30667 3.36029 3.76108 4.09041 4.15236 4.30383 4.36936 4.42120 4.53402 4.60611 4.92517 4.97999 5.15586 5.22071 5.22769 5.26135 5.34585 5.42568 5.55480 5.61543 5.65189 5.70674 5.71635 5.78951 5.81086 5.85512 5.90380 6.00927 6.14388 6.24012 6.27461 6.32155 6.50012 6.82343 6.84171 6.90179 7.28257 7.42229 7.57909 7.77088 8.12253 8.81910 9.41984 10.91781 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.018578 B = 0.003295 C = 0.003033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1506.787124 B = 8495.678939 C = 9229.792910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.090 4.090 3 C -0.141 4.141 4 C -0.133 4.133 5 C -0.151 4.151 6 C 0.138 3.862 7 H 0.113 0.887 8 N -1.106 6.106 9 S 2.693 3.307 10 O -0.963 6.963 11 O -0.969 6.969 12 C -0.702 4.702 13 C -0.026 4.026 14 C -0.144 4.144 15 C 0.027 3.973 16 C 0.039 3.961 17 C -0.517 4.517 18 H 0.059 0.941 19 C 0.061 3.939 20 N -0.891 5.891 21 Si 0.898 3.102 22 H -0.271 1.271 23 H -0.282 1.282 24 H -0.282 1.282 25 C -0.145 4.145 26 C -0.021 4.021 27 H 0.063 0.937 28 H 0.061 0.939 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.057 0.943 32 H 0.062 0.938 33 H 0.085 0.915 34 H 0.072 0.928 35 H 0.076 0.924 36 H 0.086 0.914 37 H 0.416 0.584 38 H 0.128 0.872 39 H 0.128 0.872 40 H 0.035 0.965 41 H 0.034 0.966 42 H 0.263 0.737 43 H 0.128 0.872 44 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.424 -11.503 -16.004 22.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.092 4.092 3 C -0.198 4.198 4 C -0.171 4.171 5 C -0.191 4.191 6 C 0.030 3.970 7 H 0.131 0.869 8 N -0.864 5.864 9 S 2.786 3.214 10 O -0.953 6.953 11 O -0.959 6.959 12 C -0.792 4.792 13 C -0.046 4.046 14 C -0.163 4.163 15 C 0.026 3.974 16 C 0.002 3.998 17 C -0.555 4.555 18 H 0.078 0.922 19 C -0.141 4.141 20 N -0.530 5.530 21 Si 0.726 3.274 22 H -0.196 1.196 23 H -0.208 1.208 24 H -0.208 1.208 25 C -0.164 4.164 26 C -0.041 4.041 27 H 0.082 0.918 28 H 0.080 0.920 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.076 0.924 32 H 0.081 0.919 33 H 0.103 0.897 34 H 0.091 0.909 35 H 0.094 0.906 36 H 0.105 0.895 37 H 0.251 0.749 38 H 0.146 0.854 39 H 0.146 0.854 40 H 0.053 0.947 41 H 0.053 0.947 42 H 0.073 0.927 43 H 0.146 0.854 44 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -10.213 -12.116 -15.453 22.133 hybrid contribution 0.360 0.829 0.912 1.284 sum -9.853 -11.287 -14.541 20.878 Atomic orbital electron populations 1.21576 0.93006 1.02010 1.02355 1.22228 0.96163 0.95102 0.95748 1.21784 1.00652 0.94977 1.02433 1.22946 1.01437 0.96160 0.96577 1.23396 1.03095 0.97011 0.95587 1.22438 0.93923 0.96382 0.84238 0.86926 1.55605 1.17207 1.89490 1.24054 1.01698 0.73396 0.74220 0.72089 1.93565 1.59041 1.57127 1.85599 1.93562 1.53625 1.86124 1.62579 1.30318 1.06631 1.22780 1.19431 1.20775 0.92060 0.96579 0.95148 1.21231 1.00446 0.93767 1.00897 1.21108 0.92734 0.96968 0.86568 1.18540 0.95707 0.88305 0.97206 1.21011 1.34411 0.99113 1.00965 0.92237 1.25002 0.96004 0.95053 0.98089 1.69956 1.41798 1.03083 1.38135 0.86428 0.78954 0.78400 0.83668 1.19564 1.20792 1.20793 1.21241 0.95475 0.97744 1.01949 1.20754 0.98885 0.91934 0.92484 0.91836 0.91967 0.92225 0.92191 0.92416 0.91917 0.89660 0.90908 0.90573 0.89532 0.74883 0.85375 0.85388 0.94726 0.94738 0.92687 0.85396 0.85333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.90 8.02 37.16 0.30 -0.61 16 2 C -0.09 -0.71 1.37 -153.70 -0.21 -0.92 16 3 C -0.14 -1.22 9.19 37.16 0.34 -0.88 16 4 C -0.13 -0.92 7.19 -25.92 -0.19 -1.11 16 5 C -0.15 -1.20 7.53 -25.92 -0.20 -1.40 16 6 C 0.14 1.28 3.79 -67.12 -0.25 1.02 16 7 H 0.11 1.08 7.71 -51.93 -0.40 0.68 16 8 N -1.11 -11.10 5.60 -4.20 -0.02 -11.12 16 9 S 2.69 37.34 5.69 -107.50 -0.61 36.73 16 10 O -0.96 -15.58 17.04 -57.17 -0.97 -16.56 16 11 O -0.97 -15.71 17.28 -57.17 -0.99 -16.70 16 12 C -0.70 -10.93 5.95 -39.58 -0.24 -11.16 16 13 C -0.03 -0.42 9.21 -39.58 -0.36 -0.78 16 14 C -0.14 -2.63 9.70 -39.58 -0.38 -3.02 16 15 C 0.03 0.54 5.07 -104.62 -0.53 0.01 16 16 C 0.04 0.95 5.10 -29.03 -0.15 0.80 16 17 C -0.52 -13.98 9.09 -34.44 -0.31 -14.30 16 18 H 0.06 1.62 7.74 -52.48 -0.41 1.21 16 19 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 20 N -0.89 -25.43 13.29 55.43 0.74 -24.69 16 21 Si 0.90 21.09 29.54 -169.99 -5.02 16.07 16 22 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 23 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 24 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 25 C -0.15 -2.68 9.70 -39.58 -0.38 -3.06 16 26 C -0.02 -0.34 9.52 -39.58 -0.38 -0.72 16 27 H 0.06 0.44 7.24 -51.93 -0.38 0.07 16 28 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.06 0.36 7.34 -51.93 -0.38 -0.03 16 30 H 0.06 0.50 7.94 -51.93 -0.41 0.09 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 32 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 33 H 0.08 0.56 7.96 -51.93 -0.41 0.14 16 34 H 0.07 0.44 8.10 -51.93 -0.42 0.02 16 35 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.09 0.63 7.66 -51.93 -0.40 0.23 16 37 H 0.42 3.34 7.03 -34.47 -0.24 3.10 16 38 H 0.13 1.75 7.61 -52.48 -0.40 1.35 16 39 H 0.13 2.21 8.06 -52.49 -0.42 1.79 16 40 H 0.03 0.87 8.08 -51.93 -0.42 0.45 16 41 H 0.03 0.87 8.09 -51.93 -0.42 0.45 16 42 H 0.26 7.08 8.31 -40.82 -0.34 6.75 16 43 H 0.13 2.25 8.06 -52.49 -0.42 1.82 16 44 H 0.13 1.81 7.62 -52.49 -0.40 1.41 16 LS Contribution 372.77 15.07 5.62 5.62 Total: -1.00 -32.40 372.77 -11.07 -43.47 By element: Atomic # 1 Polarization: 8.48 SS G_CDS: -6.76 Total: 1.72 kcal Atomic # 6 Polarization: -31.50 SS G_CDS: -3.04 Total: -34.54 kcal Atomic # 7 Polarization: -36.53 SS G_CDS: 0.71 Total: -35.81 kcal Atomic # 8 Polarization: -31.29 SS G_CDS: -1.96 Total: -33.25 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Atomic # 16 Polarization: 37.34 SS G_CDS: -0.61 Total: 36.73 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -32.40 -11.07 -43.47 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885188461.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.777 kcal (2) G-P(sol) polarization free energy of solvation -32.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds