Wall clock time and date at job start Tue Mar 31 2020 14:29:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 112.90752 * 2 1 4 4 C 1.53780 * 113.61447 * 228.75197 * 2 1 3 5 5 C 1.53781 * 87.08318 * 270.88304 * 4 2 1 6 6 C 1.53776 * 113.61595 * 131.25706 * 2 1 3 7 7 H 1.09002 * 113.68898 * 203.67837 * 6 2 1 8 8 N 1.46501 * 113.61393 * 334.56280 * 6 2 1 9 9 S 1.65599 * 120.00418 * 212.00440 * 8 6 2 10 10 O 1.42100 * 106.40241 * 311.46108 * 9 8 6 11 11 O 1.42096 * 106.40379 * 178.53729 * 9 8 6 12 12 C 1.76199 * 107.21658 * 65.00023 * 9 8 6 13 13 C 1.38238 * 120.00251 * 269.72679 * 12 9 8 14 14 C 1.38238 * 120.00111 * 179.78510 * 13 12 9 15 15 C 1.38229 * 119.99700 * 0.46904 * 14 13 12 16 16 C 1.50706 * 119.99458 * 179.78524 * 15 14 13 17 17 C 1.50696 * 109.47446 * 269.97653 * 16 15 14 18 18 H 1.08006 * 120.00067 * 0.02562 * 17 16 15 19 19 C 1.37871 * 120.00525 * 180.02562 * 17 16 15 20 20 N 1.31514 * 119.99567 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00565 * 179.97438 * 19 17 16 22 22 H 1.48505 * 109.46655 * 0.02562 * 21 19 17 23 23 H 1.48498 * 109.47090 * 119.99687 * 21 19 17 24 24 H 1.48495 * 109.47121 * 240.00318 * 21 19 17 25 25 C 1.38237 * 120.00404 * 359.76549 * 15 14 13 26 26 C 1.38234 * 120.00019 * 90.00010 * 12 9 8 27 27 H 1.09001 * 109.46916 * 288.74472 * 1 2 3 28 28 H 1.08998 * 109.47130 * 48.74307 * 1 2 3 29 29 H 1.08999 * 109.47184 * 168.74587 * 1 2 3 30 30 H 1.09001 * 109.47537 * 191.25062 * 3 2 1 31 31 H 1.09003 * 109.47357 * 311.25072 * 3 2 1 32 32 H 1.09000 * 109.47229 * 71.25334 * 3 2 1 33 33 H 1.09000 * 113.62102 * 156.33317 * 4 2 1 34 34 H 1.09006 * 113.69284 * 25.44198 * 4 2 1 35 35 H 1.08998 * 113.61451 * 220.01660 * 5 4 2 36 36 H 1.09001 * 113.68883 * 89.12203 * 5 4 2 37 37 H 0.97001 * 119.99713 * 32.00646 * 8 6 2 38 38 H 1.08004 * 119.99572 * 0.02562 * 13 12 9 39 39 H 1.07999 * 119.99919 * 180.25463 * 14 13 12 40 40 H 1.08995 * 109.47333 * 29.98183 * 16 15 14 41 41 H 1.09005 * 109.46615 * 149.97652 * 16 15 14 42 42 H 0.97006 * 120.00351 * 180.02562 * 20 19 17 43 43 H 1.07996 * 119.99812 * 180.02562 * 25 15 14 44 44 H 1.07999 * 120.00005 * 359.97438 * 26 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1255 1.4093 0.0000 4 6 2.1460 -0.9290 -1.0594 5 6 2.0930 -2.0426 -0.0001 6 6 2.1461 -0.9291 1.0592 7 1 3.1591 -0.6509 1.3499 8 7 1.2705 -1.1705 2.2087 9 16 1.9241 -1.4191 3.7098 10 8 2.9484 -2.3902 3.5457 11 8 0.8302 -1.5862 4.6011 12 6 2.7273 0.0761 4.1830 13 6 4.0585 0.2752 3.8680 14 6 4.6875 1.4501 4.2353 15 6 3.9879 2.4218 4.9261 16 6 4.6750 3.7006 5.3308 17 6 5.2895 3.5304 6.6961 18 1 5.1927 2.5901 7.2186 19 6 5.9754 4.5750 7.2786 20 7 6.0929 5.7202 6.6427 21 14 6.7366 4.3643 8.9714 22 1 6.4639 2.9921 9.4693 23 1 8.2038 4.5763 8.8843 24 1 6.1476 5.3567 9.9060 25 6 2.6580 2.2207 5.2453 26 6 2.0279 1.0477 4.8741 27 1 -0.3633 0.3302 0.9732 28 1 -0.3633 0.6777 -0.7725 29 1 -0.3633 -1.0079 -0.2006 30 1 3.1954 1.3517 -0.2005 31 1 1.6428 2.0078 -0.7726 32 1 1.9628 1.8726 0.9731 33 1 3.1591 -0.6499 -1.3491 34 1 1.4956 -1.1093 -1.9154 35 1 2.9717 -2.6875 -0.0002 36 1 1.1574 -2.6019 0.0008 37 1 0.3078 -1.1848 2.0905 38 1 4.6061 -0.4856 3.3315 39 1 5.7264 1.6074 3.9856 40 1 5.4555 3.9382 4.6080 41 1 3.9467 4.5112 5.3585 42 1 6.5758 6.4551 7.0522 43 1 2.1114 2.9801 5.7847 44 1 0.9889 0.8905 5.1237 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885188461.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:29:19 Heat of formation + Delta-G solvation = -70.036674 kcal Electronic energy + Delta-G solvation = -25490.833915 eV Core-core repulsion = 21920.029424 eV Total energy + Delta-G solvation = -3570.804492 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.84333 -40.23081 -38.31612 -36.96705 -35.60582 -34.25621 -33.32315 -31.97025 -31.41617 -29.25546 -28.31460 -25.60078 -25.49648 -23.74123 -23.28938 -22.47728 -20.59288 -19.66486 -18.99660 -18.58897 -18.19532 -17.45311 -16.85983 -16.57416 -15.99430 -15.78674 -15.72344 -15.30065 -15.14200 -14.63944 -14.47409 -14.09268 -13.97951 -13.87280 -13.60390 -13.41815 -13.40107 -13.24484 -13.15622 -13.06317 -12.94251 -12.69434 -12.68175 -12.65194 -12.29382 -12.15327 -12.04899 -11.67663 -11.60060 -11.46153 -11.19372 -11.03958 -10.66512 -10.23720 -9.96632 -9.94359 -8.27952 -6.40607 -0.61474 -0.06626 0.39249 1.36683 1.38254 1.50879 2.02116 2.34240 2.55813 2.82582 3.04783 3.32670 3.49255 3.68418 3.84110 3.86704 3.96552 3.98318 4.14872 4.19737 4.37152 4.46227 4.47308 4.65821 4.77507 4.80898 4.82689 4.90203 4.98739 4.99855 5.06656 5.10089 5.13845 5.21087 5.24156 5.25565 5.27503 5.32873 5.37182 5.51734 5.66493 5.66551 5.85767 5.91833 6.09236 6.09913 6.71377 7.28642 8.82289 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.018578 B = 0.003295 C = 0.003033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1506.787124 B = 8495.678939 C = 9229.792910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.087 4.087 3 C -0.143 4.143 4 C -0.125 4.125 5 C -0.149 4.149 6 C 0.120 3.880 7 H 0.108 0.892 8 N -1.089 6.089 9 S 2.719 3.281 10 O -0.982 6.982 11 O -0.988 6.988 12 C -0.699 4.699 13 C -0.020 4.020 14 C -0.152 4.152 15 C -0.003 4.003 16 C 0.048 3.952 17 C -0.533 4.533 18 H 0.053 0.947 19 C 0.010 3.990 20 N -0.925 5.925 21 Si 0.964 3.036 22 H -0.268 1.268 23 H -0.275 1.275 24 H -0.275 1.275 25 C -0.155 4.155 26 C -0.018 4.018 27 H 0.060 0.940 28 H 0.068 0.932 29 H 0.071 0.929 30 H 0.058 0.942 31 H 0.065 0.935 32 H 0.044 0.956 33 H 0.088 0.912 34 H 0.086 0.914 35 H 0.074 0.926 36 H 0.097 0.903 37 H 0.428 0.572 38 H 0.155 0.845 39 H 0.130 0.870 40 H 0.014 0.986 41 H 0.013 0.987 42 H 0.267 0.733 43 H 0.128 0.872 44 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.350 -13.398 -16.856 24.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.089 4.089 3 C -0.201 4.201 4 C -0.163 4.163 5 C -0.189 4.189 6 C 0.012 3.988 7 H 0.126 0.874 8 N -0.851 5.851 9 S 2.810 3.190 10 O -0.971 6.971 11 O -0.979 6.979 12 C -0.786 4.786 13 C -0.039 4.039 14 C -0.171 4.171 15 C -0.003 4.003 16 C 0.012 3.988 17 C -0.571 4.571 18 H 0.071 0.929 19 C -0.189 4.189 20 N -0.564 5.564 21 Si 0.788 3.212 22 H -0.193 1.193 23 H -0.200 1.200 24 H -0.200 1.200 25 C -0.173 4.173 26 C -0.037 4.037 27 H 0.079 0.921 28 H 0.087 0.913 29 H 0.090 0.910 30 H 0.077 0.923 31 H 0.084 0.916 32 H 0.063 0.937 33 H 0.106 0.894 34 H 0.105 0.895 35 H 0.093 0.907 36 H 0.115 0.885 37 H 0.266 0.734 38 H 0.172 0.828 39 H 0.148 0.852 40 H 0.032 0.968 41 H 0.031 0.969 42 H 0.076 0.924 43 H 0.146 0.854 44 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -11.141 -13.995 -16.301 24.201 hybrid contribution 0.583 1.360 1.060 1.820 sum -10.557 -12.634 -15.241 22.436 Atomic orbital electron populations 1.21626 0.92074 1.03018 1.02520 1.22247 0.96892 0.94321 0.95452 1.21805 1.00893 0.95711 1.01660 1.22925 1.01877 0.95000 0.96524 1.23425 1.03626 0.96878 0.94977 1.22761 0.93780 0.98052 0.84163 0.87389 1.55268 1.18033 1.89091 1.22677 1.00933 0.72535 0.73123 0.72419 1.93543 1.60014 1.57445 1.86146 1.93532 1.54013 1.86147 1.64171 1.30775 1.06611 1.23174 1.17999 1.21020 0.92356 0.96090 0.94473 1.21286 1.00675 0.94242 1.00928 1.20807 0.93869 0.96212 0.89408 1.18262 0.94714 0.89984 0.95887 1.21317 1.34663 0.98890 1.02250 0.92875 1.25852 0.96436 0.94708 1.01894 1.70060 1.42632 1.03863 1.39867 0.85410 0.78268 0.78413 0.79061 1.19267 1.19999 1.20046 1.21290 0.94845 0.98883 1.02328 1.20992 0.99992 0.90999 0.91752 0.92119 0.91304 0.90961 0.92262 0.91590 0.93723 0.89356 0.89504 0.90711 0.88499 0.73388 0.82776 0.85211 0.96775 0.96896 0.92373 0.85364 0.82882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.49 8.02 71.98 0.58 -0.91 16 2 C -0.09 -1.17 1.37 -51.66 -0.07 -1.24 16 3 C -0.14 -2.30 9.19 71.98 0.66 -1.64 16 4 C -0.13 -1.38 7.19 31.12 0.22 -1.16 16 5 C -0.15 -1.96 7.53 31.12 0.23 -1.72 16 6 C 0.12 1.95 3.79 45.51 0.17 2.12 16 7 H 0.11 1.87 7.71 -2.39 -0.02 1.85 16 8 N -1.09 -19.25 5.60 -167.20 -0.94 -20.19 16 9 S 2.72 69.74 5.69 -56.49 -0.32 69.42 16 10 O -0.98 -29.63 17.04 -128.00 -2.18 -31.81 16 11 O -0.99 -29.91 17.28 -128.00 -2.21 -32.12 16 12 C -0.70 -20.74 5.95 22.27 0.13 -20.60 16 13 C -0.02 -0.63 9.21 22.27 0.21 -0.42 16 14 C -0.15 -5.62 9.70 22.27 0.22 -5.41 16 15 C 0.00 -0.11 5.07 -19.86 -0.10 -0.21 16 16 C 0.05 2.48 5.10 29.10 0.15 2.63 16 17 C -0.53 -29.74 9.09 25.60 0.23 -29.51 16 18 H 0.05 2.96 7.74 -2.91 -0.02 2.94 16 19 C 0.01 0.56 5.46 84.65 0.46 1.03 16 20 N -0.92 -54.08 13.29 21.44 0.28 -53.80 16 21 Si 0.96 43.67 29.54 68.60 2.03 45.69 16 22 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 23 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 24 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 25 C -0.15 -5.78 9.70 22.27 0.22 -5.56 16 26 C -0.02 -0.57 9.52 22.27 0.21 -0.36 16 27 H 0.06 0.70 7.24 -2.39 -0.02 0.68 16 28 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 29 H 0.07 0.62 7.34 -2.39 -0.02 0.60 16 30 H 0.06 0.93 7.94 -2.39 -0.02 0.92 16 31 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.09 0.94 7.96 -2.39 -0.02 0.92 16 34 H 0.09 0.75 8.10 -2.38 -0.02 0.74 16 35 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 36 H 0.10 1.08 7.66 -2.39 -0.02 1.06 16 37 H 0.43 5.71 7.03 -96.74 -0.68 5.03 16 38 H 0.15 3.91 7.61 -2.91 -0.02 3.89 16 39 H 0.13 4.61 8.06 -2.91 -0.02 4.59 16 40 H 0.01 0.75 8.08 -2.39 -0.02 0.73 16 41 H 0.01 0.69 8.09 -2.38 -0.02 0.67 16 42 H 0.27 14.62 8.31 -92.70 -0.77 13.85 16 43 H 0.13 4.65 8.06 -2.91 -0.02 4.62 16 44 H 0.15 4.02 7.62 -2.91 -0.02 4.00 16 Total: -1.00 -69.69 372.77 0.50 -69.19 By element: Atomic # 1 Polarization: 16.28 SS G_CDS: 0.31 Total: 16.59 kcal Atomic # 6 Polarization: -66.50 SS G_CDS: 3.52 Total: -62.98 kcal Atomic # 7 Polarization: -73.33 SS G_CDS: -0.65 Total: -73.98 kcal Atomic # 8 Polarization: -59.54 SS G_CDS: -4.39 Total: -63.93 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 2.03 Total: 45.69 kcal Atomic # 16 Polarization: 69.74 SS G_CDS: -0.32 Total: 69.42 kcal Total: -69.69 0.50 -69.19 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885188461.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.848 kcal (2) G-P(sol) polarization free energy of solvation -69.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.189 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds