Wall clock time and date at job start Tue Mar 31 2020 14:29:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 112.84581 * 2 1 4 4 C 1.53780 * 113.61448 * 228.80710 * 2 1 3 5 5 C 1.53948 * 87.01697 * 220.04552 * 4 2 1 6 6 C 1.53780 * 87.11633 * 25.36271 * 5 4 2 7 7 H 1.08997 * 113.61428 * 89.18288 * 6 5 4 8 8 N 1.46494 * 113.69336 * 220.08438 * 6 5 4 9 9 S 1.65606 * 119.99997 * 242.53080 * 8 6 5 10 10 O 1.42095 * 106.40305 * 178.53953 * 9 8 6 11 11 O 1.42103 * 106.39869 * 311.46283 * 9 8 6 12 12 C 1.76207 * 107.21774 * 64.99657 * 9 8 6 13 13 C 1.38232 * 119.99959 * 269.73156 * 12 9 8 14 14 C 1.38237 * 119.99947 * 179.80751 * 13 12 9 15 15 C 1.38232 * 119.99740 * 0.39838 * 14 13 12 16 16 C 1.50705 * 120.00115 * 179.83048 * 15 14 13 17 17 C 1.50700 * 109.47032 * 270.02482 * 16 15 14 18 18 H 1.07996 * 120.00160 * 359.97438 * 17 16 15 19 19 C 1.37879 * 119.99592 * 179.97438 * 17 16 15 20 20 N 1.31513 * 119.99978 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 119.99853 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.47001 * 0.02562 * 21 19 17 23 23 H 1.48503 * 109.46843 * 119.99870 * 21 19 17 24 24 H 1.48492 * 109.47560 * 240.00069 * 21 19 17 25 25 C 1.38239 * 120.00028 * 359.85524 * 15 14 13 26 26 C 1.38231 * 120.00098 * 359.95570 * 25 15 14 27 27 H 1.08995 * 109.47299 * 50.33656 * 1 2 3 28 28 H 1.09004 * 109.46791 * 170.33147 * 1 2 3 29 29 H 1.08991 * 109.46960 * 290.33001 * 1 2 3 30 30 H 1.08993 * 109.47603 * 69.66751 * 3 2 1 31 31 H 1.09000 * 109.46814 * 189.67190 * 3 2 1 32 32 H 1.09002 * 109.47143 * 309.66639 * 3 2 1 33 33 H 1.09000 * 113.61461 * 334.56153 * 4 2 1 34 34 H 1.08995 * 113.61894 * 105.46890 * 4 2 1 35 35 H 1.09005 * 113.54029 * 270.80899 * 5 4 2 36 36 H 1.09006 * 113.66851 * 139.93263 * 5 4 2 37 37 H 0.96999 * 120.00738 * 62.52863 * 8 6 5 38 38 H 1.08001 * 120.00041 * 359.97438 * 13 12 9 39 39 H 1.07997 * 119.99965 * 180.22916 * 14 13 12 40 40 H 1.08998 * 109.46634 * 30.02093 * 16 15 14 41 41 H 1.08998 * 109.47253 * 150.02032 * 16 15 14 42 42 H 0.97000 * 120.00042 * 179.97438 * 20 19 17 43 43 H 1.08005 * 119.99445 * 179.97438 * 25 15 14 44 44 H 1.08000 * 120.00121 * 180.02562 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.1241 1.4100 0.0000 4 6 2.1461 -0.9280 -1.0603 5 6 3.1924 -1.3135 0.0012 6 6 2.1461 -0.9280 1.0602 7 1 1.4946 -1.7522 1.3506 8 7 2.7075 -0.2143 2.2098 9 16 2.6149 -0.8799 3.7234 10 8 3.2699 0.0258 4.6008 11 8 1.2667 -1.2935 3.8980 12 6 3.5879 -2.3489 3.7076 13 6 3.0087 -3.5579 3.3702 14 6 3.7729 -4.7097 3.3539 15 6 5.1143 -4.6538 3.6830 16 6 5.9466 -5.9101 3.6690 17 6 5.8986 -6.5597 5.0279 18 1 5.3233 -6.1078 5.8224 19 6 6.5891 -7.7309 5.2569 20 7 7.2892 -8.2814 4.2892 21 14 6.5302 -8.5358 6.9416 22 1 5.6790 -7.7243 7.8483 23 1 5.9597 -9.9013 6.8181 24 1 7.9045 -8.6219 7.4974 25 6 5.6923 -3.4457 4.0254 26 6 4.9290 -2.2932 4.0379 27 1 -0.3633 0.6559 -0.7911 28 1 -0.3633 -1.0131 -0.1726 29 1 -0.3633 0.3570 0.9636 30 1 1.9361 1.8835 0.9635 31 1 3.1987 1.3514 -0.1727 32 1 1.6606 1.9995 -0.7911 33 1 1.4946 -1.7522 -1.3507 34 1 2.5651 -0.3970 -1.9150 35 1 4.0712 -0.6685 0.0006 36 1 3.4445 -2.3740 0.0022 37 1 3.1334 0.6481 2.0846 38 1 1.9598 -3.6021 3.1168 39 1 3.3213 -5.6537 3.0868 40 1 5.5515 -6.5993 2.9227 41 1 6.9783 -5.6597 3.4221 42 1 7.7753 -9.1052 4.4504 43 1 6.7403 -3.4022 4.2829 44 1 5.3806 -1.3493 4.3051 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885188462.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:29:23 Heat of formation + Delta-G solvation = -50.760106 kcal Electronic energy + Delta-G solvation = -25329.401479 eV Core-core repulsion = 21759.432882 eV Total energy + Delta-G solvation = -3569.968597 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.18440 -38.79508 -37.10294 -35.74765 -33.69130 -33.41883 -31.56110 -30.81893 -30.57238 -27.78157 -27.42577 -24.80729 -23.72844 -22.67580 -22.34034 -20.89972 -19.52064 -18.91336 -17.83199 -17.15685 -16.57755 -16.44253 -15.42592 -15.14247 -15.08377 -14.60012 -14.37467 -14.37007 -13.80067 -13.47946 -13.27791 -13.08113 -12.90506 -12.69176 -12.54163 -12.32487 -12.22272 -12.00647 -11.99607 -11.90825 -11.72920 -11.69555 -11.49445 -11.00173 -10.94220 -10.93277 -10.63577 -10.50352 -10.48614 -10.39539 -9.74987 -9.66258 -9.41325 -8.58997 -8.54733 -8.37884 -6.18001 -4.22876 0.52792 1.33642 1.79758 3.08777 3.22692 3.30802 3.36186 3.77628 4.09016 4.13292 4.27227 4.37175 4.43969 4.51192 4.62939 4.91368 4.98652 5.16173 5.23117 5.23584 5.25646 5.32547 5.37272 5.53628 5.58971 5.61686 5.71449 5.72295 5.77355 5.81529 5.84353 5.91291 5.96326 6.08933 6.24916 6.27565 6.33144 6.50944 6.83012 6.84747 6.90950 7.28912 7.43054 7.58580 7.77422 8.12651 8.82270 9.42231 10.92068 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.021290 B = 0.003068 C = 0.002884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1314.886148 B = 9122.907760 C = 9707.813397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.090 4.090 3 C -0.132 4.132 4 C -0.132 4.132 5 C -0.154 4.154 6 C 0.136 3.864 7 H 0.117 0.883 8 N -1.106 6.106 9 S 2.694 3.306 10 O -0.968 6.968 11 O -0.965 6.965 12 C -0.701 4.701 13 C -0.024 4.024 14 C -0.145 4.145 15 C 0.027 3.973 16 C 0.039 3.961 17 C -0.517 4.517 18 H 0.059 0.941 19 C 0.060 3.940 20 N -0.891 5.891 21 Si 0.898 3.102 22 H -0.271 1.271 23 H -0.282 1.282 24 H -0.282 1.282 25 C -0.145 4.145 26 C -0.021 4.021 27 H 0.056 0.944 28 H 0.059 0.941 29 H 0.060 0.940 30 H 0.061 0.939 31 H 0.060 0.940 32 H 0.061 0.939 33 H 0.085 0.915 34 H 0.073 0.927 35 H 0.087 0.913 36 H 0.077 0.923 37 H 0.416 0.584 38 H 0.128 0.872 39 H 0.128 0.872 40 H 0.035 0.965 41 H 0.034 0.966 42 H 0.263 0.737 43 H 0.128 0.872 44 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.976 17.239 -11.480 22.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.092 4.092 3 C -0.189 4.189 4 C -0.171 4.171 5 C -0.194 4.194 6 C 0.028 3.972 7 H 0.134 0.866 8 N -0.863 5.863 9 S 2.787 3.213 10 O -0.959 6.959 11 O -0.955 6.955 12 C -0.790 4.790 13 C -0.044 4.044 14 C -0.164 4.164 15 C 0.026 3.974 16 C 0.002 3.998 17 C -0.555 4.555 18 H 0.078 0.922 19 C -0.142 4.142 20 N -0.530 5.530 21 Si 0.725 3.275 22 H -0.196 1.196 23 H -0.208 1.208 24 H -0.208 1.208 25 C -0.164 4.164 26 C -0.041 4.041 27 H 0.075 0.925 28 H 0.078 0.922 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.103 0.897 34 H 0.091 0.909 35 H 0.106 0.894 36 H 0.095 0.905 37 H 0.251 0.749 38 H 0.146 0.854 39 H 0.146 0.854 40 H 0.053 0.947 41 H 0.053 0.947 42 H 0.073 0.927 43 H 0.146 0.854 44 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -10.436 17.269 -10.757 22.865 hybrid contribution 0.779 -0.825 0.598 1.282 sum -9.657 16.444 -10.159 21.607 Atomic orbital electron populations 1.21775 0.93741 1.02106 1.02096 1.22219 0.95772 0.95374 0.95853 1.21572 1.00763 0.94432 1.02170 1.22957 0.98302 0.99221 0.96573 1.23459 0.97724 1.02631 0.95536 1.22471 0.95503 0.95057 0.84173 0.86568 1.55563 1.73941 1.32018 1.24801 1.01661 0.73913 0.73656 0.72102 1.93562 1.76765 1.63234 1.62318 1.93559 1.34031 1.83348 1.84553 1.30295 1.08997 1.17736 1.22019 1.20757 0.98825 0.91471 0.93346 1.21229 0.94272 0.98033 1.02858 1.21106 0.94239 0.96614 0.85425 1.18539 0.94471 0.88365 0.98376 1.21014 1.30809 1.07851 0.95811 0.92235 1.25005 0.94979 0.96888 0.97291 1.69955 1.31181 1.19795 1.32050 0.86428 0.77973 0.79264 0.83787 1.19559 1.20797 1.20797 1.21240 1.00626 0.92131 1.02442 1.20751 0.91461 0.99042 0.92836 0.92489 0.92197 0.92116 0.91984 0.92081 0.92040 0.89677 0.90877 0.89401 0.90464 0.74902 0.85415 0.85400 0.94728 0.94747 0.92686 0.85403 0.85343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.04 9.18 37.16 0.34 -0.70 16 2 C -0.09 -0.68 1.36 -153.69 -0.21 -0.89 16 3 C -0.13 -0.86 7.94 37.16 0.30 -0.57 16 4 C -0.13 -0.93 7.22 -25.83 -0.19 -1.12 16 5 C -0.15 -1.29 7.54 -25.83 -0.19 -1.49 16 6 C 0.14 1.25 3.88 -67.12 -0.26 0.99 16 7 H 0.12 1.11 7.73 -51.93 -0.40 0.71 16 8 N -1.11 -11.04 5.55 -4.20 -0.02 -11.06 16 9 S 2.69 37.25 5.71 -107.50 -0.61 36.64 16 10 O -0.97 -15.69 17.28 -57.17 -0.99 -16.68 16 11 O -0.96 -15.51 16.80 -57.17 -0.96 -16.47 16 12 C -0.70 -10.94 5.95 -39.59 -0.24 -11.17 16 13 C -0.02 -0.39 9.52 -39.58 -0.38 -0.77 16 14 C -0.14 -2.65 9.70 -39.58 -0.38 -3.04 16 15 C 0.03 0.54 5.07 -104.62 -0.53 0.01 16 16 C 0.04 0.96 5.10 -29.03 -0.15 0.81 16 17 C -0.52 -14.00 9.09 -34.44 -0.31 -14.32 16 18 H 0.06 1.62 7.74 -52.49 -0.41 1.22 16 19 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 20 N -0.89 -25.48 13.29 55.43 0.74 -24.74 16 21 Si 0.90 21.12 29.54 -169.99 -5.02 16.10 16 22 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 23 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 24 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 25 C -0.15 -2.69 9.70 -39.58 -0.38 -3.08 16 26 C -0.02 -0.35 9.52 -39.59 -0.38 -0.73 16 27 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.06 0.42 7.98 -51.93 -0.41 0.01 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.06 0.41 7.39 -51.93 -0.38 0.02 16 31 H 0.06 0.37 7.34 -51.93 -0.38 -0.02 16 32 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.08 0.56 7.99 -51.93 -0.41 0.15 16 34 H 0.07 0.46 8.10 -51.93 -0.42 0.04 16 35 H 0.09 0.70 7.64 -51.93 -0.40 0.30 16 36 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.42 3.33 7.18 -34.47 -0.25 3.08 16 38 H 0.13 1.75 7.61 -52.49 -0.40 1.35 16 39 H 0.13 2.22 8.06 -52.49 -0.42 1.80 16 40 H 0.03 0.88 8.09 -51.93 -0.42 0.46 16 41 H 0.03 0.87 8.09 -51.93 -0.42 0.45 16 42 H 0.26 7.09 8.31 -40.82 -0.34 6.76 16 43 H 0.13 2.25 8.06 -52.48 -0.42 1.83 16 44 H 0.13 1.81 7.62 -52.49 -0.40 1.41 16 LS Contribution 373.20 15.07 5.62 5.62 Total: -1.00 -32.43 373.20 -11.08 -43.52 By element: Atomic # 1 Polarization: 8.33 SS G_CDS: -6.78 Total: 1.55 kcal Atomic # 6 Polarization: -31.42 SS G_CDS: -3.06 Total: -34.48 kcal Atomic # 7 Polarization: -36.51 SS G_CDS: 0.71 Total: -35.80 kcal Atomic # 8 Polarization: -31.20 SS G_CDS: -1.95 Total: -33.15 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Atomic # 16 Polarization: 37.25 SS G_CDS: -0.61 Total: 36.64 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -32.43 -11.08 -43.52 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885188462.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.243 kcal (2) G-P(sol) polarization free energy of solvation -32.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds