Wall clock time and date at job start Tue Mar 31 2020 13:44:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 115.55710 * 2 1 4 4 C 1.53000 * 117.49695 * 214.31406 * 2 1 3 5 5 C 1.52992 * 117.49960 * 145.68929 * 2 1 3 6 6 C 1.52995 * 117.52038 * 214.97307 * 5 2 1 7 7 N 1.46508 * 117.50092 * 359.97438 * 5 2 1 8 8 S 1.65604 * 120.00039 * 124.71972 * 7 5 2 9 9 O 1.42094 * 106.40026 * 180.88637 * 8 7 5 10 10 O 1.42104 * 106.39855 * 47.97019 * 8 7 5 11 11 C 1.76198 * 107.21956 * 294.43184 * 8 7 5 12 12 C 1.38238 * 120.00208 * 99.77694 * 11 8 7 13 13 C 1.38230 * 119.99943 * 180.02562 * 12 11 8 14 14 C 1.38238 * 120.00069 * 0.26118 * 13 12 11 15 15 C 1.50700 * 120.00014 * 179.72509 * 14 13 12 16 16 C 1.50696 * 109.47368 * 89.99803 * 15 14 13 17 17 H 1.08004 * 120.00063 * 359.97438 * 16 15 14 18 18 C 1.37876 * 120.00406 * 180.02562 * 16 15 14 19 19 N 1.31513 * 119.99725 * 359.97438 * 18 16 15 20 20 Si 1.86796 * 120.00140 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.47221 * 359.97438 * 20 18 16 22 22 H 1.48504 * 109.47396 * 119.99754 * 20 18 16 23 23 H 1.48501 * 109.46962 * 239.99528 * 20 18 16 24 24 C 1.38241 * 119.99963 * 359.46194 * 14 13 12 25 25 C 1.38236 * 119.99887 * 0.55748 * 24 14 13 26 26 H 1.08998 * 109.47309 * 274.30976 * 1 2 3 27 27 H 1.08997 * 109.47222 * 34.31460 * 1 2 3 28 28 H 1.09006 * 109.47091 * 154.30968 * 1 2 3 29 29 H 1.09002 * 109.46478 * 205.68748 * 3 2 1 30 30 H 1.09001 * 109.47266 * 325.68611 * 3 2 1 31 31 H 1.09000 * 109.47185 * 85.68966 * 3 2 1 32 32 H 1.08999 * 117.49722 * 145.02636 * 4 2 1 33 33 H 1.08991 * 117.51920 * 359.97438 * 4 2 1 34 34 H 1.09005 * 109.47616 * 202.93655 * 6 5 2 35 35 H 1.09001 * 109.46866 * 322.93836 * 6 5 2 36 36 H 1.08999 * 109.47327 * 82.93315 * 6 5 2 37 37 H 0.96998 * 119.99869 * 304.72780 * 7 5 2 38 38 H 1.08001 * 119.99938 * 0.02562 * 12 11 8 39 39 H 1.07997 * 120.00030 * 179.97438 * 13 12 11 40 40 H 1.08996 * 109.47260 * 209.99755 * 15 14 13 41 41 H 1.08994 * 109.47182 * 329.99552 * 15 14 13 42 42 H 0.97000 * 120.00339 * 180.02562 * 19 18 16 43 43 H 1.08001 * 120.00083 * 180.27882 * 24 14 13 44 44 H 1.07995 * 120.00098 * 179.72215 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.1901 1.3803 0.0000 4 6 2.2365 -1.1210 -0.7651 5 6 2.2365 -1.1209 0.7649 6 6 3.5491 -0.7764 1.4714 7 7 1.3962 -2.1119 1.4419 8 16 1.5899 -3.7237 1.1149 9 8 0.6279 -4.4114 1.9028 10 8 2.9850 -3.9835 1.1900 11 6 1.1269 -3.9742 -0.5666 12 6 2.0993 -4.0686 -1.5446 13 6 1.7360 -4.2646 -2.8638 14 6 0.4001 -4.3606 -3.2059 15 6 0.0038 -4.5681 -4.6450 16 6 -0.0752 -6.0444 -4.9365 17 1 0.1404 -6.7610 -4.1577 18 6 -0.4218 -6.4806 -6.1977 19 7 -0.6838 -5.6081 -7.1462 20 14 -0.5204 -8.3107 -6.5588 21 1 -0.1823 -9.0762 -5.3321 22 1 -1.8976 -8.6558 -6.9944 23 1 0.4407 -8.6549 -7.6373 24 6 -0.5721 -4.2719 -2.2271 25 6 -0.2089 -4.0756 -0.9079 26 1 -0.3634 0.0772 1.0247 27 1 -0.3633 0.8488 -0.5793 28 1 -0.3633 -0.9261 -0.4455 29 1 3.1823 1.3084 -0.4455 30 1 1.5811 2.0743 -0.5793 31 1 2.2772 1.7414 1.0247 32 1 3.1716 -0.8751 -1.2683 33 1 1.6116 -1.8588 -1.2681 34 1 4.1342 -1.6850 1.6143 35 1 4.1153 -0.0716 0.8625 36 1 3.3330 -0.3272 2.4408 37 1 0.7263 -1.8239 2.0816 38 1 3.1429 -3.9893 -1.2779 39 1 2.4957 -4.3380 -3.6279 40 1 -0.9689 -4.1099 -4.8236 41 1 0.7470 -4.1084 -5.2964 42 1 -0.9280 -5.9148 -8.0335 43 1 -1.6157 -4.3515 -2.4938 44 1 -0.9685 -4.0017 -0.1439 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885308371.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:44:15 Heat of formation + Delta-G solvation = -41.730768 kcal Electronic energy + Delta-G solvation = -25833.255264 eV Core-core repulsion = 22263.678209 eV Total energy + Delta-G solvation = -3569.577056 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.61713 -38.78175 -37.07231 -35.74161 -33.70979 -33.18057 -31.59969 -30.63273 -30.01259 -28.12410 -27.42322 -27.00465 -23.73514 -22.37463 -21.52136 -20.89434 -19.28673 -19.09874 -17.72112 -17.17063 -16.46037 -16.17782 -15.37809 -15.11953 -14.92880 -14.42033 -14.37367 -14.15580 -13.86011 -13.40147 -13.30559 -13.11773 -12.87586 -12.72039 -12.50470 -12.35395 -12.22375 -12.02853 -11.99279 -11.87644 -11.83882 -11.61344 -11.50265 -11.27794 -11.00050 -10.94043 -10.65366 -10.50519 -10.40525 -9.83231 -9.74883 -9.61098 -9.39384 -8.59209 -8.55152 -8.37186 -6.18492 -4.23411 0.51251 1.30996 1.77469 2.99644 3.22351 3.30535 3.32990 3.35819 3.77857 4.08977 4.33875 4.36641 4.43410 4.51388 4.61398 4.86361 5.04169 5.15821 5.21257 5.25496 5.37050 5.42013 5.56143 5.63000 5.69766 5.70104 5.72121 5.74154 5.77928 5.84425 5.89621 5.91042 5.99278 6.11019 6.18550 6.22282 6.31540 6.49475 6.81992 6.85614 6.89815 7.27521 7.41187 7.57457 7.76872 8.11915 8.81722 9.41790 10.91556 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.018168 B = 0.003531 C = 0.003231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1540.832629 B = 7926.810424 C = 8663.715141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.115 4.115 3 C -0.114 4.114 4 C -0.184 4.184 5 C 0.106 3.894 6 C -0.128 4.128 7 N -1.086 6.086 8 S 2.698 3.302 9 O -0.968 6.968 10 O -0.960 6.960 11 C -0.703 4.703 12 C -0.020 4.020 13 C -0.146 4.146 14 C 0.028 3.972 15 C 0.039 3.961 16 C -0.517 4.517 17 H 0.059 0.941 18 C 0.061 3.939 19 N -0.891 5.891 20 Si 0.898 3.102 21 H -0.271 1.271 22 H -0.282 1.282 23 H -0.282 1.282 24 C -0.145 4.145 25 C -0.022 4.022 26 H 0.059 0.941 27 H 0.062 0.938 28 H 0.062 0.938 29 H 0.060 0.940 30 H 0.062 0.938 31 H 0.060 0.940 32 H 0.109 0.891 33 H 0.118 0.882 34 H 0.076 0.924 35 H 0.070 0.930 36 H 0.062 0.938 37 H 0.416 0.584 38 H 0.133 0.867 39 H 0.129 0.871 40 H 0.034 0.966 41 H 0.035 0.965 42 H 0.263 0.737 43 H 0.128 0.872 44 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.933 14.039 15.449 21.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.117 4.117 3 C -0.172 4.172 4 C -0.222 4.222 5 C 0.016 3.984 6 C -0.187 4.187 7 N -0.842 5.842 8 S 2.791 3.209 9 O -0.958 6.958 10 O -0.950 6.950 11 C -0.793 4.793 12 C -0.040 4.040 13 C -0.165 4.165 14 C 0.027 3.973 15 C 0.002 3.998 16 C -0.555 4.555 17 H 0.078 0.922 18 C -0.141 4.141 19 N -0.530 5.530 20 Si 0.725 3.275 21 H -0.196 1.196 22 H -0.208 1.208 23 H -0.208 1.208 24 C -0.164 4.164 25 C -0.042 4.042 26 H 0.077 0.923 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.079 0.921 30 H 0.081 0.919 31 H 0.079 0.921 32 H 0.127 0.873 33 H 0.136 0.864 34 H 0.095 0.905 35 H 0.089 0.911 36 H 0.081 0.919 37 H 0.251 0.749 38 H 0.150 0.850 39 H 0.147 0.853 40 H 0.052 0.948 41 H 0.053 0.947 42 H 0.073 0.927 43 H 0.146 0.854 44 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 5.310 13.343 15.763 21.324 hybrid contribution -0.758 -0.795 -0.823 1.372 sum 4.553 12.548 14.940 20.035 Atomic orbital electron populations 1.21319 0.91624 1.02644 1.01786 1.21893 0.95382 0.91278 1.03140 1.21386 1.00163 0.93686 1.01934 1.24173 1.03805 1.02021 0.92204 1.20543 0.92884 0.94192 0.90753 1.21630 0.94077 1.02684 1.00280 1.54982 1.49473 1.24018 1.55735 1.01612 0.73659 0.71673 0.73993 1.93574 1.62946 1.70773 1.68517 1.93540 1.31690 1.83239 1.86567 1.30311 1.01677 1.23836 1.23465 1.20801 0.98071 0.92585 0.92513 1.21245 0.96704 1.02751 0.95751 1.21111 0.92571 0.84664 0.98918 1.18538 0.97975 0.97928 0.85322 1.21011 1.47682 0.90463 0.96348 0.92234 1.24998 0.94905 0.98146 0.96068 1.69953 1.46353 1.33749 1.02908 0.86434 0.77808 0.84776 0.78467 1.19566 1.20799 1.20792 1.21222 1.00281 1.02762 0.92165 1.20703 0.93350 0.93164 0.96948 0.92253 0.91871 0.91869 0.92082 0.91887 0.92055 0.87318 0.86416 0.90530 0.91080 0.91906 0.74923 0.84962 0.85340 0.94752 0.94707 0.92686 0.85427 0.85673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.02 9.29 37.16 0.35 -0.68 16 2 C -0.11 -1.03 2.70 -154.51 -0.42 -1.44 16 3 C -0.11 -0.81 8.69 37.16 0.32 -0.49 16 4 C -0.18 -1.95 8.29 -26.73 -0.22 -2.17 16 5 C 0.11 1.05 2.60 -131.82 -0.34 0.71 16 6 C -0.13 -1.13 9.42 37.16 0.35 -0.78 16 7 N -1.09 -11.40 5.30 0.54 0.00 -11.40 16 8 S 2.70 38.15 5.67 -107.50 -0.61 37.54 16 9 O -0.97 -16.06 17.57 -57.17 -1.00 -17.06 16 10 O -0.96 -15.50 16.34 -57.17 -0.93 -16.43 16 11 C -0.70 -10.84 4.09 -39.58 -0.16 -11.00 16 12 C -0.02 -0.32 7.44 -39.58 -0.29 -0.62 16 13 C -0.15 -2.62 9.70 -39.58 -0.38 -3.00 16 14 C 0.03 0.56 5.07 -104.62 -0.53 0.03 16 15 C 0.04 0.94 5.10 -29.04 -0.15 0.80 16 16 C -0.52 -13.92 9.09 -34.44 -0.31 -14.23 16 17 H 0.06 1.61 7.74 -52.48 -0.41 1.21 16 18 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 19 N -0.89 -25.37 13.29 55.43 0.74 -24.63 16 20 Si 0.90 21.05 29.54 -169.99 -5.02 16.03 16 21 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 22 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 23 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 24 C -0.15 -2.63 9.70 -39.58 -0.38 -3.01 16 25 C -0.02 -0.35 9.53 -39.58 -0.38 -0.73 16 26 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.06 0.51 7.92 -51.93 -0.41 0.10 16 28 H 0.06 0.63 7.90 -51.93 -0.41 0.22 16 29 H 0.06 0.40 7.25 -51.93 -0.38 0.03 16 30 H 0.06 0.42 7.92 -51.93 -0.41 0.01 16 31 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.11 1.02 8.05 -51.93 -0.42 0.61 16 33 H 0.12 1.45 4.56 -51.93 -0.24 1.21 16 34 H 0.08 0.79 7.65 -51.93 -0.40 0.39 16 35 H 0.07 0.51 6.84 -51.93 -0.36 0.16 16 36 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.42 3.45 8.94 -34.47 -0.31 3.15 16 38 H 0.13 1.87 7.44 -52.49 -0.39 1.48 16 39 H 0.13 2.21 8.06 -52.49 -0.42 1.78 16 40 H 0.03 0.86 8.09 -51.93 -0.42 0.44 16 41 H 0.03 0.87 8.09 -51.93 -0.42 0.45 16 42 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 43 H 0.13 2.21 8.06 -52.49 -0.42 1.78 16 44 H 0.13 1.69 7.86 -52.49 -0.41 1.28 16 LS Contribution 370.30 15.07 5.58 5.58 Total: -1.00 -32.01 370.30 -10.53 -42.53 By element: Atomic # 1 Polarization: 9.51 SS G_CDS: -6.62 Total: 2.89 kcal Atomic # 6 Polarization: -32.39 SS G_CDS: -2.65 Total: -35.05 kcal Atomic # 7 Polarization: -36.77 SS G_CDS: 0.74 Total: -36.03 kcal Atomic # 8 Polarization: -31.55 SS G_CDS: -1.94 Total: -33.49 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Atomic # 16 Polarization: 38.15 SS G_CDS: -0.61 Total: 37.54 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -32.01 -10.53 -42.53 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885308371.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.803 kcal (2) G-P(sol) polarization free energy of solvation -32.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.533 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds