Wall clock time and date at job start Tue Mar 31 2020 13:44:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 115.55710 * 2 1 4 4 C 1.53000 * 117.49695 * 214.31406 * 2 1 3 5 5 C 1.52992 * 117.49960 * 145.68929 * 2 1 3 6 6 C 1.52995 * 117.52038 * 214.97307 * 5 2 1 7 7 N 1.46508 * 117.50092 * 359.97438 * 5 2 1 8 8 S 1.65604 * 120.00039 * 124.71972 * 7 5 2 9 9 O 1.42094 * 106.40026 * 180.88637 * 8 7 5 10 10 O 1.42104 * 106.39855 * 47.97019 * 8 7 5 11 11 C 1.76198 * 107.21956 * 294.43184 * 8 7 5 12 12 C 1.38238 * 120.00208 * 99.77694 * 11 8 7 13 13 C 1.38230 * 119.99943 * 180.02562 * 12 11 8 14 14 C 1.38238 * 120.00069 * 0.26118 * 13 12 11 15 15 C 1.50700 * 120.00014 * 179.72509 * 14 13 12 16 16 C 1.50696 * 109.47368 * 89.99803 * 15 14 13 17 17 H 1.08004 * 120.00063 * 359.97438 * 16 15 14 18 18 C 1.37876 * 120.00406 * 180.02562 * 16 15 14 19 19 N 1.31513 * 119.99725 * 359.97438 * 18 16 15 20 20 Si 1.86796 * 120.00140 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.47221 * 359.97438 * 20 18 16 22 22 H 1.48504 * 109.47396 * 119.99754 * 20 18 16 23 23 H 1.48501 * 109.46962 * 239.99528 * 20 18 16 24 24 C 1.38241 * 119.99963 * 359.46194 * 14 13 12 25 25 C 1.38236 * 119.99887 * 0.55748 * 24 14 13 26 26 H 1.08998 * 109.47309 * 274.30976 * 1 2 3 27 27 H 1.08997 * 109.47222 * 34.31460 * 1 2 3 28 28 H 1.09006 * 109.47091 * 154.30968 * 1 2 3 29 29 H 1.09002 * 109.46478 * 205.68748 * 3 2 1 30 30 H 1.09001 * 109.47266 * 325.68611 * 3 2 1 31 31 H 1.09000 * 109.47185 * 85.68966 * 3 2 1 32 32 H 1.08999 * 117.49722 * 145.02636 * 4 2 1 33 33 H 1.08991 * 117.51920 * 359.97438 * 4 2 1 34 34 H 1.09005 * 109.47616 * 202.93655 * 6 5 2 35 35 H 1.09001 * 109.46866 * 322.93836 * 6 5 2 36 36 H 1.08999 * 109.47327 * 82.93315 * 6 5 2 37 37 H 0.96998 * 119.99869 * 304.72780 * 7 5 2 38 38 H 1.08001 * 119.99938 * 0.02562 * 12 11 8 39 39 H 1.07997 * 120.00030 * 179.97438 * 13 12 11 40 40 H 1.08996 * 109.47260 * 209.99755 * 15 14 13 41 41 H 1.08994 * 109.47182 * 329.99552 * 15 14 13 42 42 H 0.97000 * 120.00339 * 180.02562 * 19 18 16 43 43 H 1.08001 * 120.00083 * 180.27882 * 24 14 13 44 44 H 1.07995 * 120.00098 * 179.72215 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.1901 1.3803 0.0000 4 6 2.2365 -1.1210 -0.7651 5 6 2.2365 -1.1209 0.7649 6 6 3.5491 -0.7764 1.4714 7 7 1.3962 -2.1119 1.4419 8 16 1.5899 -3.7237 1.1149 9 8 0.6279 -4.4114 1.9028 10 8 2.9850 -3.9835 1.1900 11 6 1.1269 -3.9742 -0.5666 12 6 2.0993 -4.0686 -1.5446 13 6 1.7360 -4.2646 -2.8638 14 6 0.4001 -4.3606 -3.2059 15 6 0.0038 -4.5681 -4.6450 16 6 -0.0752 -6.0444 -4.9365 17 1 0.1404 -6.7610 -4.1577 18 6 -0.4218 -6.4806 -6.1977 19 7 -0.6838 -5.6081 -7.1462 20 14 -0.5204 -8.3107 -6.5588 21 1 -0.1823 -9.0762 -5.3321 22 1 -1.8976 -8.6558 -6.9944 23 1 0.4407 -8.6549 -7.6373 24 6 -0.5721 -4.2719 -2.2271 25 6 -0.2089 -4.0756 -0.9079 26 1 -0.3634 0.0772 1.0247 27 1 -0.3633 0.8488 -0.5793 28 1 -0.3633 -0.9261 -0.4455 29 1 3.1823 1.3084 -0.4455 30 1 1.5811 2.0743 -0.5793 31 1 2.2772 1.7414 1.0247 32 1 3.1716 -0.8751 -1.2683 33 1 1.6116 -1.8588 -1.2681 34 1 4.1342 -1.6850 1.6143 35 1 4.1153 -0.0716 0.8625 36 1 3.3330 -0.3272 2.4408 37 1 0.7263 -1.8239 2.0816 38 1 3.1429 -3.9893 -1.2779 39 1 2.4957 -4.3380 -3.6279 40 1 -0.9689 -4.1099 -4.8236 41 1 0.7470 -4.1084 -5.2964 42 1 -0.9280 -5.9148 -8.0335 43 1 -1.6157 -4.3515 -2.4938 44 1 -0.9685 -4.0017 -0.1439 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885308371.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:44:14 Heat of formation + Delta-G solvation = -61.526112 kcal Electronic energy + Delta-G solvation = -25834.113655 eV Core-core repulsion = 22263.678209 eV Total energy + Delta-G solvation = -3570.435446 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.54732 -40.02741 -38.30871 -36.98635 -35.61269 -34.02859 -33.34956 -31.99216 -30.74107 -29.31268 -28.67375 -27.68673 -25.59142 -23.74339 -22.51552 -22.31031 -20.32484 -19.98715 -18.90295 -18.57842 -18.27560 -17.11049 -16.85950 -16.49502 -15.99721 -15.83770 -15.58404 -15.28923 -14.91431 -14.58419 -14.45949 -14.17332 -14.05615 -13.84329 -13.52846 -13.42629 -13.37436 -13.27143 -13.18092 -13.10447 -12.89852 -12.81519 -12.69371 -12.68339 -12.51233 -12.18847 -12.04696 -11.97410 -11.65309 -11.50939 -11.25834 -10.66166 -10.58316 -10.19894 -9.95579 -9.87084 -8.27627 -6.40144 -0.64893 -0.07008 0.40014 1.36607 1.38356 1.50813 1.92793 2.34085 2.52908 2.60326 2.80738 3.05206 3.33001 3.57347 3.72551 3.82139 3.90450 3.97056 4.15760 4.21872 4.28057 4.47603 4.50107 4.70070 4.80547 4.84929 4.90832 4.91892 4.93944 4.99056 5.09579 5.10929 5.11934 5.13036 5.21443 5.24909 5.26412 5.31194 5.33703 5.41624 5.55464 5.67054 5.86615 5.91593 6.09069 6.09611 6.71952 7.29096 8.82588 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.018168 B = 0.003531 C = 0.003231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1540.832629 B = 7926.810424 C = 8663.715141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.100 4.100 3 C -0.115 4.115 4 C -0.205 4.205 5 C 0.100 3.900 6 C -0.129 4.129 7 N -1.071 6.071 8 S 2.721 3.279 9 O -0.989 6.989 10 O -0.977 6.977 11 C -0.698 4.698 12 C -0.012 4.012 13 C -0.152 4.152 14 C 0.000 4.000 15 C 0.049 3.951 16 C -0.533 4.533 17 H 0.053 0.947 18 C 0.011 3.989 19 N -0.925 5.925 20 Si 0.963 3.037 21 H -0.268 1.268 22 H -0.275 1.275 23 H -0.275 1.275 24 C -0.153 4.153 25 C -0.016 4.016 26 H 0.074 0.926 27 H 0.069 0.931 28 H 0.046 0.954 29 H 0.066 0.934 30 H 0.067 0.933 31 H 0.074 0.926 32 H 0.117 0.883 33 H 0.098 0.902 34 H 0.060 0.940 35 H 0.088 0.912 36 H 0.077 0.923 37 H 0.429 0.571 38 H 0.152 0.848 39 H 0.129 0.871 40 H 0.013 0.987 41 H 0.014 0.986 42 H 0.267 0.733 43 H 0.128 0.872 44 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.464 14.790 17.457 23.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.102 4.102 3 C -0.172 4.172 4 C -0.243 4.243 5 C 0.011 3.989 6 C -0.187 4.187 7 N -0.831 5.831 8 S 2.812 3.188 9 O -0.979 6.979 10 O -0.967 6.967 11 C -0.786 4.786 12 C -0.031 4.031 13 C -0.171 4.171 14 C 0.000 4.000 15 C 0.012 3.988 16 C -0.571 4.571 17 H 0.071 0.929 18 C -0.188 4.188 19 N -0.564 5.564 20 Si 0.788 3.212 21 H -0.193 1.193 22 H -0.201 1.201 23 H -0.200 1.200 24 C -0.172 4.172 25 C -0.036 4.036 26 H 0.093 0.907 27 H 0.088 0.912 28 H 0.066 0.934 29 H 0.085 0.915 30 H 0.086 0.914 31 H 0.093 0.907 32 H 0.136 0.864 33 H 0.116 0.884 34 H 0.079 0.921 35 H 0.106 0.894 36 H 0.096 0.904 37 H 0.267 0.733 38 H 0.170 0.830 39 H 0.147 0.853 40 H 0.031 0.969 41 H 0.032 0.968 42 H 0.076 0.924 43 H 0.146 0.854 44 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 5.829 14.092 17.766 23.414 hybrid contribution -0.901 -0.915 -1.360 1.871 sum 4.928 13.176 16.406 21.612 Atomic orbital electron populations 1.21390 0.91635 1.02150 1.02767 1.21999 0.95434 0.91764 1.01044 1.21433 1.00355 0.92373 1.03009 1.24216 1.04417 1.03000 0.92693 1.20772 0.93567 0.94296 0.90314 1.21672 0.93248 1.02470 1.01335 1.54621 1.50020 1.22756 1.55752 1.00917 0.72798 0.72275 0.72844 1.93545 1.63489 1.72226 1.68663 1.93522 1.32608 1.84105 1.86444 1.30696 1.01450 1.21972 1.24434 1.20951 0.99222 0.91403 0.91538 1.21258 0.95821 1.03083 0.96931 1.20789 0.94123 0.88022 0.97077 1.18256 0.96189 0.96383 0.88003 1.21322 1.47469 0.91878 0.96419 0.92869 1.25838 0.94485 1.02595 0.95906 1.70056 1.47209 1.35783 1.03372 0.85426 0.78094 0.79410 0.78314 1.19278 1.20058 1.20042 1.21256 0.99971 1.03138 0.92859 1.20932 0.94277 0.91923 0.96427 0.90710 0.91211 0.93438 0.91493 0.91427 0.90674 0.86439 0.88400 0.92145 0.89365 0.90407 0.73307 0.83015 0.85304 0.96877 0.96808 0.92389 0.85382 0.83061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.89 9.29 71.98 0.67 -1.23 16 2 C -0.10 -1.55 2.70 -52.18 -0.14 -1.69 16 3 C -0.11 -1.27 8.69 71.98 0.63 -0.65 16 4 C -0.21 -4.03 8.29 30.59 0.25 -3.77 16 5 C 0.10 1.74 2.60 3.60 0.01 1.75 16 6 C -0.13 -1.92 9.42 71.98 0.68 -1.24 16 7 N -1.07 -20.01 5.30 -152.21 -0.81 -20.82 16 8 S 2.72 72.01 5.67 -56.49 -0.32 71.69 16 9 O -0.99 -30.89 17.57 -128.00 -2.25 -33.14 16 10 O -0.98 -29.80 16.34 -128.00 -2.09 -31.89 16 11 C -0.70 -20.72 4.09 22.27 0.09 -20.63 16 12 C -0.01 -0.37 7.44 22.27 0.17 -0.21 16 13 C -0.15 -5.57 9.70 22.27 0.22 -5.36 16 14 C 0.00 0.01 5.07 -19.86 -0.10 -0.09 16 15 C 0.05 2.47 5.10 29.10 0.15 2.62 16 16 C -0.53 -29.60 9.09 25.60 0.23 -29.37 16 17 H 0.05 2.95 7.74 -2.91 -0.02 2.93 16 18 C 0.01 0.60 5.46 84.65 0.46 1.06 16 19 N -0.92 -53.97 13.29 21.45 0.28 -53.68 16 20 Si 0.96 43.60 29.54 68.60 2.03 45.63 16 21 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 22 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 23 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 24 C -0.15 -5.63 9.70 22.27 0.22 -5.41 16 25 C -0.02 -0.51 9.53 22.27 0.21 -0.30 16 26 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 27 H 0.07 0.99 7.92 -2.39 -0.02 0.97 16 28 H 0.05 0.89 7.90 -2.38 -0.02 0.87 16 29 H 0.07 0.68 7.25 -2.39 -0.02 0.67 16 30 H 0.07 0.71 7.92 -2.39 -0.02 0.69 16 31 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 32 H 0.12 2.04 8.05 -2.39 -0.02 2.02 16 33 H 0.10 2.34 4.56 -2.39 -0.01 2.33 16 34 H 0.06 1.12 7.65 -2.38 -0.02 1.10 16 35 H 0.09 1.00 6.84 -2.39 -0.02 0.99 16 36 H 0.08 0.92 8.14 -2.39 -0.02 0.91 16 37 H 0.43 5.93 8.94 -96.74 -0.86 5.07 16 38 H 0.15 4.10 7.44 -2.91 -0.02 4.07 16 39 H 0.13 4.58 8.06 -2.91 -0.02 4.56 16 40 H 0.01 0.70 8.09 -2.39 -0.02 0.68 16 41 H 0.01 0.73 8.09 -2.39 -0.02 0.71 16 42 H 0.27 14.59 8.31 -92.71 -0.77 13.82 16 43 H 0.13 4.56 8.06 -2.91 -0.02 4.54 16 44 H 0.15 3.81 7.86 -2.91 -0.02 3.79 16 Total: -1.00 -69.13 370.30 0.72 -68.42 By element: Atomic # 1 Polarization: 18.17 SS G_CDS: 0.14 Total: 18.30 kcal Atomic # 6 Polarization: -68.24 SS G_CDS: 3.74 Total: -64.50 kcal Atomic # 7 Polarization: -73.98 SS G_CDS: -0.52 Total: -74.50 kcal Atomic # 8 Polarization: -60.69 SS G_CDS: -4.34 Total: -65.03 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.63 kcal Atomic # 16 Polarization: 72.01 SS G_CDS: -0.32 Total: 71.69 kcal Total: -69.13 0.72 -68.42 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885308371.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.891 kcal (2) G-P(sol) polarization free energy of solvation -69.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds