Wall clock time and date at job start Tue Mar 31 2020 13:44:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 115.56103 * 2 1 4 4 C 1.53082 * 117.49073 * 214.29087 * 2 1 3 5 5 C 1.53003 * 59.98359 * 252.51482 * 4 2 1 6 6 C 1.52998 * 117.49650 * 107.50453 * 5 4 2 7 7 N 1.46497 * 117.49762 * 252.49861 * 5 4 2 8 8 S 1.65595 * 120.00184 * 279.23202 * 7 5 4 9 9 O 1.42097 * 106.40284 * 308.83139 * 8 7 5 10 10 O 1.42101 * 106.40577 * 175.90688 * 8 7 5 11 11 C 1.76208 * 107.21953 * 62.37026 * 8 7 5 12 12 C 1.38233 * 119.99909 * 89.99432 * 11 8 7 13 13 C 1.38230 * 120.00065 * 179.97438 * 12 11 8 14 14 C 1.38238 * 119.99969 * 359.97438 * 13 12 11 15 15 C 1.50695 * 120.00112 * 179.97438 * 14 13 12 16 16 C 1.50701 * 109.47223 * 89.99930 * 15 14 13 17 17 H 1.07993 * 120.00121 * 359.97438 * 16 15 14 18 18 C 1.37883 * 119.99862 * 179.97438 * 16 15 14 19 19 N 1.31516 * 119.99903 * 179.97438 * 18 16 15 20 20 Si 1.86802 * 120.00079 * 359.97438 * 18 16 15 21 21 H 1.48498 * 109.46996 * 90.00082 * 20 18 16 22 22 H 1.48499 * 109.46777 * 209.99528 * 20 18 16 23 23 H 1.48496 * 109.47088 * 330.00222 * 20 18 16 24 24 C 1.38240 * 119.99821 * 0.26554 * 14 13 12 25 25 C 1.38228 * 119.99741 * 359.54247 * 24 14 13 26 26 H 1.08997 * 109.46989 * 274.31139 * 1 2 3 27 27 H 1.09004 * 109.46991 * 34.30798 * 1 2 3 28 28 H 1.08998 * 109.47257 * 154.30972 * 1 2 3 29 29 H 1.09004 * 109.46912 * 205.68926 * 3 2 1 30 30 H 1.08993 * 109.47428 * 325.68892 * 3 2 1 31 31 H 1.08998 * 109.46875 * 85.69494 * 3 2 1 32 32 H 1.08996 * 117.51029 * 145.03484 * 4 2 1 33 33 H 1.08996 * 117.49313 * 0.02562 * 4 2 1 34 34 H 1.09003 * 109.47007 * 200.00073 * 6 5 4 35 35 H 1.09000 * 109.47098 * 319.99273 * 6 5 4 36 36 H 1.08991 * 109.47571 * 79.99688 * 6 5 4 37 37 H 0.97001 * 119.99722 * 99.23277 * 7 5 4 38 38 H 1.07999 * 120.00310 * 0.02562 * 12 11 8 39 39 H 1.08001 * 120.00309 * 180.02562 * 13 12 11 40 40 H 1.09000 * 109.47471 * 329.99270 * 15 14 13 41 41 H 1.09000 * 109.47457 * 209.99750 * 15 14 13 42 42 H 0.96994 * 120.00305 * 179.97438 * 19 18 16 43 43 H 1.07999 * 119.99821 * 179.73072 * 24 14 13 44 44 H 1.08003 * 120.00133 * 180.22282 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1901 1.3802 0.0000 4 6 2.2366 -1.1219 -0.7651 5 6 2.2364 -1.1211 0.7650 6 6 1.3588 -2.1560 1.4718 7 7 3.4932 -0.7908 1.4413 8 16 4.6658 -1.9463 1.6204 9 8 4.0277 -3.0804 2.1912 10 8 5.7799 -1.2982 2.2186 11 6 5.1777 -2.4248 0.0036 12 6 6.2177 -1.7588 -0.6175 13 6 6.6197 -2.1345 -1.8855 14 6 5.9820 -3.1766 -2.5324 15 6 6.4199 -3.5858 -3.9150 16 6 7.4922 -4.6396 -3.8111 17 1 7.8237 -4.9788 -2.8409 18 6 8.0499 -5.1708 -4.9548 19 7 8.9860 -6.0901 -4.8641 20 14 7.4758 -4.5847 -6.6330 21 1 8.3040 -3.4298 -7.0639 22 1 7.6152 -5.6882 -7.6169 23 1 6.0522 -4.1701 -6.5522 24 6 4.9388 -3.8394 -1.9132 25 6 4.5394 -3.4662 -0.6436 26 1 -0.3633 0.0773 1.0247 27 1 -0.3633 0.8489 -0.5793 28 1 -0.3634 -0.9261 -0.4455 29 1 3.1824 1.3084 -0.4455 30 1 1.5812 2.0742 -0.5792 31 1 2.2773 1.7412 1.0248 32 1 3.1718 -0.8767 -1.2684 33 1 1.6112 -1.8592 -1.2683 34 1 1.1704 -1.8338 2.4960 35 1 0.4115 -2.2522 0.9412 36 1 1.8690 -3.1190 1.4819 37 1 3.6385 0.1049 1.7843 38 1 6.7167 -0.9455 -0.1117 39 1 7.4325 -1.6145 -2.3706 40 1 6.8137 -2.7176 -4.4434 41 1 5.5672 -3.9879 -4.4621 42 1 9.3781 -6.4640 -5.6686 43 1 4.4377 -4.6507 -2.4203 44 1 3.7267 -3.9864 -0.1584 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885308372.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:44:18 Heat of formation + Delta-G solvation = -38.813823 kcal Electronic energy + Delta-G solvation = -25700.548570 eV Core-core repulsion = 22131.098002 eV Total energy + Delta-G solvation = -3569.450567 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.60532 -38.85597 -37.11042 -35.75951 -33.68562 -33.23037 -31.74216 -30.64251 -30.09880 -28.21166 -27.93473 -27.06733 -23.50372 -22.41379 -21.54421 -20.72104 -19.34086 -19.13851 -17.73955 -17.25523 -16.91635 -16.21498 -15.45090 -15.11006 -14.89929 -14.47274 -14.30799 -14.15538 -13.91200 -13.56472 -13.25710 -13.15713 -12.86955 -12.76152 -12.63818 -12.55310 -12.33545 -12.11095 -12.00559 -11.93011 -11.86313 -11.76742 -11.73831 -11.43027 -11.07748 -10.92195 -10.72337 -10.52430 -10.24330 -10.07288 -9.69412 -9.55838 -9.44405 -8.70916 -8.61992 -8.43477 -6.19056 -4.20571 0.48958 1.28019 1.74712 2.97401 3.19488 3.28032 3.28657 3.29082 3.74542 4.07437 4.29938 4.30430 4.38643 4.46818 4.56753 4.75502 4.95387 5.09418 5.20173 5.20893 5.30117 5.33266 5.51920 5.57998 5.58733 5.60119 5.63896 5.68212 5.73429 5.78149 5.83210 5.83602 5.96404 6.03276 6.16711 6.19840 6.26360 6.45591 6.69588 6.71730 6.80705 6.81958 7.29919 7.30493 7.53332 8.34135 8.84819 9.39190 10.93518 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.016971 B = 0.003574 C = 0.003250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1649.456326 B = 7832.946120 C = 8613.738285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.114 4.114 3 C -0.119 4.119 4 C -0.172 4.172 5 C 0.105 3.895 6 C -0.135 4.135 7 N -1.086 6.086 8 S 2.698 3.302 9 O -0.959 6.959 10 O -0.968 6.968 11 C -0.696 4.696 12 C -0.022 4.022 13 C -0.144 4.144 14 C 0.032 3.968 15 C 0.006 3.994 16 C -0.520 4.520 17 H 0.075 0.925 18 C 0.072 3.928 19 N -0.894 5.894 20 Si 0.879 3.121 21 H -0.275 1.275 22 H -0.285 1.285 23 H -0.265 1.265 24 C -0.143 4.143 25 C -0.016 4.016 26 H 0.062 0.938 27 H 0.062 0.938 28 H 0.061 0.939 29 H 0.062 0.938 30 H 0.063 0.937 31 H 0.059 0.941 32 H 0.105 0.895 33 H 0.106 0.894 34 H 0.066 0.934 35 H 0.071 0.929 36 H 0.084 0.916 37 H 0.415 0.585 38 H 0.129 0.871 39 H 0.128 0.872 40 H 0.029 0.971 41 H 0.033 0.967 42 H 0.266 0.734 43 H 0.129 0.871 44 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.716 14.175 9.747 24.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.116 4.116 3 C -0.176 4.176 4 C -0.211 4.211 5 C 0.015 3.985 6 C -0.194 4.194 7 N -0.843 5.843 8 S 2.791 3.209 9 O -0.949 6.949 10 O -0.958 6.958 11 C -0.786 4.786 12 C -0.042 4.042 13 C -0.163 4.163 14 C 0.031 3.969 15 C -0.031 4.031 16 C -0.558 4.558 17 H 0.093 0.907 18 C -0.130 4.130 19 N -0.532 5.532 20 Si 0.706 3.294 21 H -0.201 1.201 22 H -0.211 1.211 23 H -0.189 1.189 24 C -0.162 4.162 25 C -0.035 4.035 26 H 0.081 0.919 27 H 0.081 0.919 28 H 0.080 0.920 29 H 0.081 0.919 30 H 0.082 0.918 31 H 0.078 0.922 32 H 0.124 0.876 33 H 0.125 0.875 34 H 0.085 0.915 35 H 0.090 0.910 36 H 0.102 0.898 37 H 0.251 0.749 38 H 0.147 0.853 39 H 0.146 0.854 40 H 0.047 0.953 41 H 0.052 0.948 42 H 0.076 0.924 43 H 0.146 0.854 44 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -17.287 13.548 10.410 24.305 hybrid contribution 0.159 0.557 -1.612 1.713 sum -17.128 14.105 8.798 23.868 Atomic orbital electron populations 1.21399 0.91512 1.02282 1.02085 1.21871 0.94991 0.91495 1.03216 1.21338 1.00579 0.93781 1.01903 1.23886 1.03238 1.00862 0.93068 1.20617 0.86895 1.00513 0.90468 1.21770 0.98712 0.98444 1.00461 1.55028 1.27985 1.27877 1.73381 1.01607 0.72208 0.73002 0.74101 1.93547 1.75632 1.50217 1.75536 1.93571 1.50764 1.75836 1.75649 1.30290 1.11666 1.11311 1.25296 1.20745 0.92646 0.96562 0.94200 1.21197 1.00965 0.99005 0.95115 1.20676 0.89546 0.89522 0.97142 1.18977 0.97731 0.97566 0.88805 1.20826 1.19201 1.20525 0.95214 0.90670 1.24989 0.94440 0.94486 0.99107 1.69887 1.26365 1.27620 1.29343 0.86792 0.79847 0.78728 0.84061 1.20054 1.21065 1.18944 1.21190 0.98815 1.00929 0.95269 1.20733 0.96350 0.92509 0.93915 0.91936 0.91906 0.91953 0.91904 0.91771 0.92166 0.87643 0.87549 0.91536 0.90977 0.89768 0.74946 0.85303 0.85373 0.95317 0.94839 0.92369 0.85354 0.85232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.72 8.57 37.16 0.32 -0.41 16 2 C -0.11 -0.89 2.70 -154.47 -0.42 -1.31 16 3 C -0.12 -0.84 8.93 37.16 0.33 -0.51 16 4 C -0.17 -1.60 8.44 -26.69 -0.23 -1.82 16 5 C 0.11 0.98 2.67 -131.82 -0.35 0.63 16 6 C -0.14 -1.24 8.94 37.16 0.33 -0.91 16 7 N -1.09 -11.01 5.63 0.54 0.00 -11.01 16 8 S 2.70 37.28 5.73 -107.50 -0.62 36.67 16 9 O -0.96 -15.11 15.03 -57.17 -0.86 -15.97 16 10 O -0.97 -15.78 17.28 -57.17 -0.99 -16.77 16 11 C -0.70 -10.59 5.18 -39.59 -0.21 -10.79 16 12 C -0.02 -0.35 9.52 -39.59 -0.38 -0.73 16 13 C -0.14 -2.56 9.70 -39.58 -0.38 -2.95 16 14 C 0.03 0.62 5.07 -104.62 -0.53 0.09 16 15 C 0.01 0.14 4.17 -29.04 -0.12 0.02 16 16 C -0.52 -14.24 9.65 -34.44 -0.33 -14.57 16 17 H 0.08 2.28 7.98 -52.49 -0.42 1.86 16 18 C 0.07 2.02 5.47 -17.82 -0.10 1.93 16 19 N -0.89 -26.79 13.96 55.43 0.77 -26.02 16 20 Si 0.88 20.55 27.47 -169.99 -4.67 15.88 16 21 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 22 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 23 H -0.26 -5.86 6.54 56.52 0.37 -5.49 16 24 C -0.14 -2.51 9.70 -39.58 -0.38 -2.89 16 25 C -0.02 -0.24 8.94 -39.59 -0.35 -0.60 16 26 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.06 0.35 7.92 -51.93 -0.41 -0.06 16 28 H 0.06 0.37 7.22 -51.93 -0.37 -0.01 16 29 H 0.06 0.48 7.90 -51.93 -0.41 0.07 16 30 H 0.06 0.40 7.92 -51.93 -0.41 -0.01 16 31 H 0.06 0.38 7.86 -51.93 -0.41 -0.03 16 32 H 0.11 1.11 7.79 -51.93 -0.40 0.70 16 33 H 0.11 0.91 8.05 -51.93 -0.42 0.49 16 34 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.07 0.51 6.51 -51.93 -0.34 0.18 16 36 H 0.08 0.90 6.59 -51.93 -0.34 0.56 16 37 H 0.42 3.38 7.98 -34.47 -0.28 3.10 16 38 H 0.13 1.78 7.62 -52.49 -0.40 1.38 16 39 H 0.13 2.16 8.06 -52.49 -0.42 1.73 16 40 H 0.03 0.62 7.52 -51.93 -0.39 0.23 16 41 H 0.03 0.74 7.14 -51.93 -0.37 0.36 16 42 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 43 H 0.13 2.12 8.06 -52.49 -0.42 1.70 16 44 H 0.13 1.74 7.62 -52.48 -0.40 1.34 16 LS Contribution 367.83 15.07 5.54 5.54 Total: -1.00 -33.09 367.83 -10.24 -43.34 By element: Atomic # 1 Polarization: 9.78 SS G_CDS: -6.63 Total: 3.15 kcal Atomic # 6 Polarization: -32.02 SS G_CDS: -2.80 Total: -34.81 kcal Atomic # 7 Polarization: -37.80 SS G_CDS: 0.78 Total: -37.02 kcal Atomic # 8 Polarization: -30.89 SS G_CDS: -1.85 Total: -32.74 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -4.67 Total: 15.88 kcal Atomic # 16 Polarization: 37.28 SS G_CDS: -0.62 Total: 36.67 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -33.09 -10.24 -43.34 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885308372.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.522 kcal (2) G-P(sol) polarization free energy of solvation -33.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.336 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds