Wall clock time and date at job start Tue Mar 31 2020 13:44:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 115.56103 * 2 1 4 4 C 1.53082 * 117.49073 * 214.29087 * 2 1 3 5 5 C 1.53003 * 59.98359 * 252.51482 * 4 2 1 6 6 C 1.52998 * 117.49650 * 107.50453 * 5 4 2 7 7 N 1.46497 * 117.49762 * 252.49861 * 5 4 2 8 8 S 1.65595 * 120.00184 * 279.23202 * 7 5 4 9 9 O 1.42097 * 106.40284 * 308.83139 * 8 7 5 10 10 O 1.42101 * 106.40577 * 175.90688 * 8 7 5 11 11 C 1.76208 * 107.21953 * 62.37026 * 8 7 5 12 12 C 1.38233 * 119.99909 * 89.99432 * 11 8 7 13 13 C 1.38230 * 120.00065 * 179.97438 * 12 11 8 14 14 C 1.38238 * 119.99969 * 359.97438 * 13 12 11 15 15 C 1.50695 * 120.00112 * 179.97438 * 14 13 12 16 16 C 1.50701 * 109.47223 * 89.99930 * 15 14 13 17 17 H 1.07993 * 120.00121 * 359.97438 * 16 15 14 18 18 C 1.37883 * 119.99862 * 179.97438 * 16 15 14 19 19 N 1.31516 * 119.99903 * 179.97438 * 18 16 15 20 20 Si 1.86802 * 120.00079 * 359.97438 * 18 16 15 21 21 H 1.48498 * 109.46996 * 90.00082 * 20 18 16 22 22 H 1.48499 * 109.46777 * 209.99528 * 20 18 16 23 23 H 1.48496 * 109.47088 * 330.00222 * 20 18 16 24 24 C 1.38240 * 119.99821 * 0.26554 * 14 13 12 25 25 C 1.38228 * 119.99741 * 359.54247 * 24 14 13 26 26 H 1.08997 * 109.46989 * 274.31139 * 1 2 3 27 27 H 1.09004 * 109.46991 * 34.30798 * 1 2 3 28 28 H 1.08998 * 109.47257 * 154.30972 * 1 2 3 29 29 H 1.09004 * 109.46912 * 205.68926 * 3 2 1 30 30 H 1.08993 * 109.47428 * 325.68892 * 3 2 1 31 31 H 1.08998 * 109.46875 * 85.69494 * 3 2 1 32 32 H 1.08996 * 117.51029 * 145.03484 * 4 2 1 33 33 H 1.08996 * 117.49313 * 0.02562 * 4 2 1 34 34 H 1.09003 * 109.47007 * 200.00073 * 6 5 4 35 35 H 1.09000 * 109.47098 * 319.99273 * 6 5 4 36 36 H 1.08991 * 109.47571 * 79.99688 * 6 5 4 37 37 H 0.97001 * 119.99722 * 99.23277 * 7 5 4 38 38 H 1.07999 * 120.00310 * 0.02562 * 12 11 8 39 39 H 1.08001 * 120.00309 * 180.02562 * 13 12 11 40 40 H 1.09000 * 109.47471 * 329.99270 * 15 14 13 41 41 H 1.09000 * 109.47457 * 209.99750 * 15 14 13 42 42 H 0.96994 * 120.00305 * 179.97438 * 19 18 16 43 43 H 1.07999 * 119.99821 * 179.73072 * 24 14 13 44 44 H 1.08003 * 120.00133 * 180.22282 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1901 1.3802 0.0000 4 6 2.2366 -1.1219 -0.7651 5 6 2.2364 -1.1211 0.7650 6 6 1.3588 -2.1560 1.4718 7 7 3.4932 -0.7908 1.4413 8 16 4.6658 -1.9463 1.6204 9 8 4.0277 -3.0804 2.1912 10 8 5.7799 -1.2982 2.2186 11 6 5.1777 -2.4248 0.0036 12 6 6.2177 -1.7588 -0.6175 13 6 6.6197 -2.1345 -1.8855 14 6 5.9820 -3.1766 -2.5324 15 6 6.4199 -3.5858 -3.9150 16 6 7.4922 -4.6396 -3.8111 17 1 7.8237 -4.9788 -2.8409 18 6 8.0499 -5.1708 -4.9548 19 7 8.9860 -6.0901 -4.8641 20 14 7.4758 -4.5847 -6.6330 21 1 8.3040 -3.4298 -7.0639 22 1 7.6152 -5.6882 -7.6169 23 1 6.0522 -4.1701 -6.5522 24 6 4.9388 -3.8394 -1.9132 25 6 4.5394 -3.4662 -0.6436 26 1 -0.3633 0.0773 1.0247 27 1 -0.3633 0.8489 -0.5793 28 1 -0.3634 -0.9261 -0.4455 29 1 3.1824 1.3084 -0.4455 30 1 1.5812 2.0742 -0.5792 31 1 2.2773 1.7412 1.0248 32 1 3.1718 -0.8767 -1.2684 33 1 1.6112 -1.8592 -1.2683 34 1 1.1704 -1.8338 2.4960 35 1 0.4115 -2.2522 0.9412 36 1 1.8690 -3.1190 1.4819 37 1 3.6385 0.1049 1.7843 38 1 6.7167 -0.9455 -0.1117 39 1 7.4325 -1.6145 -2.3706 40 1 6.8137 -2.7176 -4.4434 41 1 5.5672 -3.9879 -4.4621 42 1 9.3781 -6.4640 -5.6686 43 1 4.4377 -4.6507 -2.4203 44 1 3.7267 -3.9864 -0.1584 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885308372.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:44:17 Heat of formation + Delta-G solvation = -60.213972 kcal Electronic energy + Delta-G solvation = -25701.476550 eV Core-core repulsion = 22131.098002 eV Total energy + Delta-G solvation = -3570.378547 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.40400 -40.11413 -38.32212 -36.98021 -35.54132 -34.02970 -33.54663 -31.96412 -30.77325 -29.71188 -28.74404 -27.65865 -25.27543 -23.74444 -22.39566 -22.21910 -20.32191 -19.98165 -19.03032 -18.86610 -18.34001 -17.09719 -16.75615 -16.53485 -15.99322 -15.82453 -15.50923 -15.34170 -14.79708 -14.61571 -14.48972 -14.19737 -14.14526 -13.97894 -13.63321 -13.57831 -13.43512 -13.30211 -13.20090 -13.08696 -12.90845 -12.69152 -12.57642 -12.53788 -12.50823 -12.06918 -12.00680 -11.92770 -11.73413 -11.65229 -11.37362 -10.82957 -10.37675 -10.24565 -9.93956 -9.90817 -8.33801 -6.41097 -0.64377 -0.06341 0.41073 1.35990 1.37677 1.49158 1.93994 2.32385 2.52208 2.62335 2.80448 3.00687 3.33175 3.62027 3.74944 3.84433 3.90585 3.98057 4.08832 4.19244 4.21002 4.47093 4.48508 4.71865 4.79146 4.84055 4.85505 4.90607 4.96430 5.00084 5.02752 5.09451 5.10963 5.11686 5.12532 5.17987 5.22902 5.29804 5.32845 5.44211 5.49401 5.56403 5.78656 5.94512 6.06314 6.19075 6.65693 7.22878 8.82748 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.016971 B = 0.003574 C = 0.003250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1649.456326 B = 7832.946120 C = 8613.738285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.095 4.095 3 C -0.124 4.124 4 C -0.183 4.183 5 C 0.090 3.910 6 C -0.138 4.138 7 N -1.071 6.071 8 S 2.719 3.281 9 O -0.976 6.976 10 O -0.991 6.991 11 C -0.693 4.693 12 C -0.022 4.022 13 C -0.154 4.154 14 C 0.000 4.000 15 C 0.012 3.988 16 C -0.526 4.526 17 H 0.026 0.974 18 C 0.009 3.991 19 N -0.948 5.948 20 Si 0.953 3.047 21 H -0.265 1.265 22 H -0.284 1.284 23 H -0.241 1.241 24 C -0.151 4.151 25 C -0.011 4.011 26 H 0.070 0.930 27 H 0.072 0.928 28 H 0.066 0.934 29 H 0.054 0.946 30 H 0.075 0.925 31 H 0.070 0.930 32 H 0.091 0.909 33 H 0.113 0.887 34 H 0.069 0.931 35 H 0.092 0.908 36 H 0.066 0.934 37 H 0.427 0.573 38 H 0.150 0.850 39 H 0.132 0.868 40 H 0.038 0.962 41 H 0.042 0.958 42 H 0.269 0.731 43 H 0.134 0.866 44 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.321 16.261 9.615 27.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.097 4.097 3 C -0.181 4.181 4 C -0.222 4.222 5 C 0.001 3.999 6 C -0.196 4.196 7 N -0.831 5.831 8 S 2.811 3.189 9 O -0.966 6.966 10 O -0.982 6.982 11 C -0.781 4.781 12 C -0.042 4.042 13 C -0.173 4.173 14 C 0.000 4.000 15 C -0.025 4.025 16 C -0.564 4.564 17 H 0.044 0.956 18 C -0.188 4.188 19 N -0.588 5.588 20 Si 0.776 3.224 21 H -0.190 1.190 22 H -0.210 1.210 23 H -0.164 1.164 24 C -0.169 4.169 25 C -0.030 4.030 26 H 0.089 0.911 27 H 0.091 0.909 28 H 0.085 0.915 29 H 0.073 0.927 30 H 0.094 0.906 31 H 0.089 0.911 32 H 0.110 0.890 33 H 0.132 0.868 34 H 0.088 0.912 35 H 0.111 0.889 36 H 0.084 0.916 37 H 0.265 0.735 38 H 0.167 0.833 39 H 0.150 0.850 40 H 0.057 0.943 41 H 0.060 0.940 42 H 0.078 0.922 43 H 0.152 0.848 44 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -19.893 15.649 10.284 27.320 hybrid contribution 0.928 -0.065 -1.407 1.687 sum -18.965 15.585 8.877 26.103 Atomic orbital electron populations 1.21458 0.90037 1.03025 1.02896 1.21996 0.95959 0.91152 1.00624 1.21417 1.00337 0.93606 1.02763 1.23919 1.03245 1.02251 0.92808 1.20817 0.86580 1.02067 0.90460 1.21805 0.99415 0.97356 1.01053 1.54651 1.27392 1.27788 1.73279 1.00934 0.71992 0.72880 0.73102 1.93531 1.75867 1.51611 1.75614 1.93537 1.52441 1.76225 1.75970 1.30654 1.10967 1.10664 1.25777 1.20966 0.92667 0.96998 0.93527 1.21307 1.01085 0.98895 0.95995 1.20556 0.91505 0.91451 0.96519 1.18818 0.96285 0.96235 0.91140 1.21074 1.20445 1.21664 0.93228 0.95577 1.26011 0.94387 0.94461 1.03968 1.70057 1.28335 1.29619 1.30765 0.85615 0.80657 0.78315 0.77839 1.18958 1.20959 1.16389 1.21307 0.98552 1.00940 0.96136 1.20943 0.96602 0.92343 0.93130 0.91103 0.90943 0.91492 0.92702 0.90646 0.91113 0.89030 0.86846 0.91217 0.88898 0.91559 0.73525 0.83264 0.85030 0.94349 0.94012 0.92220 0.84817 0.83083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.08 8.57 71.98 0.62 -0.46 16 2 C -0.10 -1.23 2.70 -52.15 -0.14 -1.37 16 3 C -0.12 -1.42 8.93 71.98 0.64 -0.78 16 4 C -0.18 -3.05 8.44 30.62 0.26 -2.79 16 5 C 0.09 1.49 2.67 3.61 0.01 1.50 16 6 C -0.14 -2.22 8.94 71.98 0.64 -1.57 16 7 N -1.07 -19.63 5.63 -152.21 -0.86 -20.49 16 8 S 2.72 71.58 5.73 -56.49 -0.32 71.26 16 9 O -0.98 -29.56 15.03 -128.00 -1.92 -31.48 16 10 O -0.99 -31.11 17.28 -128.00 -2.21 -33.32 16 11 C -0.69 -20.40 5.18 22.27 0.12 -20.29 16 12 C -0.02 -0.69 9.52 22.27 0.21 -0.48 16 13 C -0.15 -5.49 9.70 22.27 0.22 -5.27 16 14 C 0.00 0.00 5.07 -19.87 -0.10 -0.10 16 15 C 0.01 0.55 4.17 29.10 0.12 0.68 16 16 C -0.53 -29.77 9.65 25.60 0.25 -29.52 16 17 H 0.03 1.67 7.98 -2.91 -0.02 1.65 16 18 C 0.01 0.53 5.47 84.66 0.46 0.99 16 19 N -0.95 -58.75 13.96 21.45 0.30 -58.45 16 20 Si 0.95 42.26 27.47 68.60 1.88 44.14 16 21 H -0.26 -11.24 7.11 99.48 0.71 -10.54 16 22 H -0.28 -12.45 7.11 99.48 0.71 -11.75 16 23 H -0.24 -9.65 6.54 99.48 0.65 -9.00 16 24 C -0.15 -5.26 9.70 22.27 0.22 -5.04 16 25 C -0.01 -0.33 8.94 22.27 0.20 -0.13 16 26 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 27 H 0.07 0.56 7.92 -2.39 -0.02 0.54 16 28 H 0.07 0.57 7.22 -2.39 -0.02 0.56 16 29 H 0.05 0.72 7.90 -2.39 -0.02 0.71 16 30 H 0.07 0.71 7.92 -2.39 -0.02 0.69 16 31 H 0.07 0.67 7.86 -2.39 -0.02 0.65 16 32 H 0.09 1.80 7.79 -2.39 -0.02 1.78 16 33 H 0.11 1.70 8.05 -2.39 -0.02 1.68 16 34 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 35 H 0.09 1.07 6.51 -2.39 -0.02 1.05 16 36 H 0.07 1.32 6.59 -2.39 -0.02 1.30 16 37 H 0.43 5.99 7.98 -96.75 -0.77 5.21 16 38 H 0.15 3.94 7.62 -2.91 -0.02 3.91 16 39 H 0.13 4.46 8.06 -2.91 -0.02 4.43 16 40 H 0.04 1.63 7.52 -2.39 -0.02 1.61 16 41 H 0.04 1.79 7.14 -2.39 -0.02 1.77 16 42 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16 43 H 0.13 4.40 8.06 -2.91 -0.02 4.37 16 44 H 0.15 3.84 7.62 -2.91 -0.02 3.82 16 Total: -1.00 -72.98 367.83 0.76 -72.22 By element: Atomic # 1 Polarization: 20.59 SS G_CDS: 0.17 Total: 20.76 kcal Atomic # 6 Polarization: -68.36 SS G_CDS: 3.72 Total: -64.64 kcal Atomic # 7 Polarization: -78.38 SS G_CDS: -0.56 Total: -78.94 kcal Atomic # 8 Polarization: -60.67 SS G_CDS: -4.14 Total: -64.80 kcal Atomic # 14 Polarization: 42.26 SS G_CDS: 1.88 Total: 44.14 kcal Atomic # 16 Polarization: 71.58 SS G_CDS: -0.32 Total: 71.26 kcal Total: -72.98 0.76 -72.22 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885308372.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.003 kcal (2) G-P(sol) polarization free energy of solvation -72.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.217 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds