Wall clock time and date at job start Tue Mar 31 2020 13:47:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 112.85208 * 2 1 4 4 C 1.53784 * 113.61254 * 131.19608 * 2 1 3 5 5 C 1.53786 * 87.08086 * 89.11239 * 4 2 1 6 6 N 1.46498 * 113.61226 * 139.97733 * 5 4 2 7 7 S 1.65607 * 119.99651 * 146.53187 * 6 5 4 8 8 O 1.42097 * 106.40132 * 311.45977 * 7 6 5 9 9 O 1.42107 * 106.39904 * 178.54249 * 7 6 5 10 10 C 1.76199 * 107.21942 * 65.00149 * 7 6 5 11 11 C 1.38231 * 119.99760 * 269.72967 * 10 7 6 12 12 C 1.38241 * 119.99883 * 179.76667 * 11 10 7 13 13 C 1.38241 * 119.99699 * 0.48083 * 12 11 10 14 14 C 1.50696 * 120.00100 * 179.76722 * 13 12 11 15 15 C 1.50700 * 109.47278 * 270.02483 * 14 13 12 16 16 H 1.07999 * 120.00091 * 359.97438 * 15 14 13 17 17 C 1.37876 * 119.99925 * 179.97438 * 15 14 13 18 18 N 1.31518 * 120.00210 * 179.97438 * 17 15 14 19 19 Si 1.86800 * 119.99997 * 0.02562 * 17 15 14 20 20 H 1.48499 * 109.47454 * 89.99709 * 19 17 15 21 21 H 1.48504 * 109.47211 * 209.99801 * 19 17 15 22 22 H 1.48497 * 109.47344 * 329.99568 * 19 17 15 23 23 C 1.38241 * 119.99845 * 359.79388 * 13 12 11 24 24 C 1.38234 * 119.99670 * 89.99861 * 10 7 6 25 25 C 1.53786 * 87.17054 * 25.39271 * 5 4 2 26 26 H 1.09000 * 109.47179 * 288.80977 * 1 2 3 27 27 H 1.08999 * 109.47158 * 48.80289 * 1 2 3 28 28 H 1.09000 * 109.47535 * 168.80618 * 1 2 3 29 29 H 1.09000 * 109.46910 * 191.19837 * 3 2 1 30 30 H 1.08995 * 109.47054 * 311.19154 * 3 2 1 31 31 H 1.08997 * 109.47001 * 71.19468 * 3 2 1 32 32 H 1.08996 * 113.61579 * 334.56993 * 4 2 1 33 33 H 1.08992 * 113.61284 * 203.66148 * 4 2 1 34 34 H 1.09000 * 113.61958 * 270.80099 * 5 4 2 35 35 H 0.96995 * 120.00383 * 326.53150 * 6 5 4 36 36 H 1.08001 * 120.00603 * 359.97438 * 11 10 7 37 37 H 1.07994 * 120.00551 * 180.24981 * 12 11 10 38 38 H 1.08998 * 109.46918 * 30.02380 * 14 13 12 39 39 H 1.08994 * 109.47290 * 150.02093 * 14 13 12 40 40 H 0.96996 * 120.00021 * 179.97438 * 18 17 15 41 41 H 1.07997 * 119.99768 * 179.97438 * 23 13 12 42 42 H 1.07995 * 120.00639 * 0.02562 * 24 10 7 43 43 H 1.08993 * 113.61376 * 89.15945 * 25 5 4 44 44 H 1.09000 * 113.60786 * 220.05922 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1242 1.4099 0.0000 4 6 2.1460 -0.9281 1.0603 5 6 2.0928 -2.0426 0.0020 6 7 3.2738 -2.9094 0.0028 7 16 3.1227 -4.5150 -0.3736 8 8 2.0392 -5.0087 0.4019 9 8 4.4319 -5.0650 -0.3185 10 6 2.6134 -4.6103 -2.0576 11 6 1.2675 -4.6264 -2.3728 12 6 0.8679 -4.6963 -3.6943 13 6 1.8142 -4.7601 -4.7001 14 6 1.3786 -4.8416 -6.1404 15 6 1.2249 -6.2871 -6.5377 16 1 1.4232 -7.0687 -5.8193 17 6 0.8310 -6.6119 -7.8185 18 7 0.6973 -7.8734 -8.1655 19 14 0.4887 -5.2601 -9.0614 20 1 1.7381 -4.9338 -9.7948 21 1 -0.5438 -5.7222 -10.0237 22 1 -0.0006 -4.0495 -8.3541 23 6 3.1600 -4.7498 -4.3845 24 6 3.5596 -4.6746 -3.0633 25 6 2.1448 -0.9318 -1.0602 26 1 -0.3633 0.3313 0.9728 27 1 -0.3633 0.6769 -0.7733 28 1 -0.3634 -1.0081 -0.1995 29 1 3.1942 1.3532 -0.1996 30 1 1.6416 2.0075 -0.7733 31 1 1.9600 1.8733 0.9728 32 1 1.4945 -1.1068 1.9156 33 1 3.1590 -0.6486 1.3496 34 1 1.1572 -2.6020 0.0034 35 1 4.1443 -2.5429 0.2238 36 1 0.5282 -4.5809 -1.5868 37 1 -0.1835 -4.7047 -3.9408 38 1 0.4247 -4.3282 -6.2611 39 1 2.1285 -4.3684 -6.7741 40 1 0.4199 -8.1018 -9.0664 41 1 3.8993 -4.8001 -5.1702 42 1 4.6110 -4.6669 -2.8168 43 1 3.1575 -0.6534 -1.3517 44 1 1.4923 -1.1135 -1.9142 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885309783.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:47:07 Heat of formation + Delta-G solvation = -47.993592 kcal Electronic energy + Delta-G solvation = -25200.654460 eV Core-core repulsion = 21630.805828 eV Total energy + Delta-G solvation = -3569.848632 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.10289 -38.88571 -37.13702 -35.77816 -34.17630 -33.68546 -31.74567 -30.64691 -29.59863 -27.97644 -27.73389 -26.02723 -23.51180 -22.57418 -22.22491 -20.75504 -19.65616 -18.60140 -17.86578 -17.26468 -16.91962 -16.50894 -15.43289 -15.18368 -15.08717 -14.62162 -14.45497 -14.29962 -13.91118 -13.68834 -13.29534 -13.17954 -13.08261 -12.77786 -12.63944 -12.45769 -12.21441 -12.07133 -11.97465 -11.96988 -11.90058 -11.84701 -11.78153 -11.07305 -10.99818 -10.92820 -10.54968 -10.50998 -10.38748 -10.24743 -10.09231 -9.59409 -9.50678 -8.71310 -8.63846 -8.44875 -6.19389 -4.20986 0.48604 1.26365 1.73130 3.04437 3.19347 3.27876 3.28496 3.73738 4.06539 4.12261 4.21161 4.29680 4.38970 4.45278 4.56067 4.90376 4.91080 5.08597 5.18401 5.18752 5.27583 5.31733 5.33881 5.47050 5.53741 5.57100 5.57842 5.62420 5.72218 5.76014 5.81995 5.85961 5.92666 6.03917 6.15632 6.23436 6.24091 6.43835 6.68878 6.70310 6.80248 6.81596 7.28911 7.29594 7.52829 8.33735 8.84367 9.38828 10.93174 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.014726 B = 0.003428 C = 0.002981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1900.879689 B = 8166.248611 C = 9389.625419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.089 4.089 3 C -0.133 4.133 4 C -0.134 4.134 5 C 0.127 3.873 6 N -1.107 6.107 7 S 2.695 3.305 8 O -0.964 6.964 9 O -0.967 6.967 10 C -0.698 4.698 11 C -0.023 4.023 12 C -0.142 4.142 13 C 0.031 3.969 14 C 0.006 3.994 15 C -0.520 4.520 16 H 0.075 0.925 17 C 0.072 3.928 18 N -0.894 5.894 19 Si 0.879 3.121 20 H -0.275 1.275 21 H -0.285 1.285 22 H -0.265 1.265 23 C -0.143 4.143 24 C -0.020 4.020 25 C -0.146 4.146 26 H 0.059 0.941 27 H 0.060 0.940 28 H 0.060 0.940 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.055 0.945 32 H 0.075 0.925 33 H 0.088 0.912 34 H 0.116 0.884 35 H 0.416 0.584 36 H 0.130 0.870 37 H 0.129 0.871 38 H 0.034 0.966 39 H 0.029 0.971 40 H 0.266 0.734 41 H 0.129 0.871 42 H 0.130 0.870 43 H 0.089 0.911 44 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.890 18.495 17.067 25.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.090 4.090 3 C -0.191 4.191 4 C -0.173 4.173 5 C 0.020 3.980 6 N -0.864 5.864 7 S 2.787 3.213 8 O -0.954 6.954 9 O -0.957 6.957 10 C -0.787 4.787 11 C -0.043 4.043 12 C -0.161 4.161 13 C 0.031 3.969 14 C -0.031 4.031 15 C -0.558 4.558 16 H 0.093 0.907 17 C -0.130 4.130 18 N -0.532 5.532 19 Si 0.706 3.294 20 H -0.200 1.200 21 H -0.211 1.211 22 H -0.189 1.189 23 C -0.162 4.162 24 C -0.040 4.040 25 C -0.186 4.186 26 H 0.078 0.922 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.094 0.906 33 H 0.106 0.894 34 H 0.134 0.866 35 H 0.250 0.750 36 H 0.147 0.853 37 H 0.147 0.853 38 H 0.052 0.948 39 H 0.047 0.953 40 H 0.076 0.924 41 H 0.147 0.853 42 H 0.148 0.852 43 H 0.107 0.893 44 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 2.819 17.559 17.454 24.919 hybrid contribution -0.005 0.845 -1.502 1.723 sum 2.815 18.404 15.953 24.518 Atomic orbital electron populations 1.21654 0.92898 1.02402 1.02052 1.21697 0.95740 0.94586 0.96967 1.21697 1.00465 0.95197 1.01698 1.23450 1.01832 0.94966 0.97069 1.22314 0.88159 0.90090 0.97453 1.55562 1.16008 1.29151 1.85638 1.01665 0.73370 0.72120 0.74115 1.93563 1.56071 1.77742 1.68036 1.93570 1.38825 1.75963 1.87329 1.30345 1.01959 1.23266 1.23160 1.20756 0.93288 0.92994 0.97243 1.21202 1.00227 1.02691 0.91999 1.20688 0.92806 0.85683 0.97760 1.18978 0.97102 0.99166 0.87835 1.20824 1.47321 0.89535 0.98112 0.90667 1.24988 0.94547 0.95428 0.98067 1.69889 1.46821 1.16705 1.19795 0.86790 0.78601 0.82581 0.81440 1.20036 1.21058 1.18944 1.21216 0.96346 1.02673 0.95967 1.20753 0.98157 0.92593 0.92460 1.23689 1.02031 0.95471 0.97386 0.92217 0.92116 0.92060 0.92528 0.92499 0.92577 0.90633 0.89395 0.86586 0.74966 0.85261 0.85296 0.94828 0.95277 0.92361 0.85300 0.85167 0.89283 0.90499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.89 9.07 37.16 0.34 -0.55 16 2 C -0.09 -0.61 1.39 -153.60 -0.21 -0.83 16 3 C -0.13 -0.81 9.20 37.16 0.34 -0.47 16 4 C -0.13 -0.94 7.01 -25.91 -0.18 -1.12 16 5 C 0.13 1.11 4.07 -67.11 -0.27 0.83 16 6 N -1.11 -10.45 5.79 -4.19 -0.02 -10.48 16 7 S 2.69 36.43 5.71 -107.50 -0.61 35.82 16 8 O -0.96 -15.36 16.79 -57.17 -0.96 -16.32 16 9 O -0.97 -15.44 17.28 -57.17 -0.99 -16.43 16 10 C -0.70 -10.62 5.95 -39.59 -0.24 -10.86 16 11 C -0.02 -0.36 9.52 -39.58 -0.38 -0.74 16 12 C -0.14 -2.52 9.70 -39.58 -0.38 -2.91 16 13 C 0.03 0.61 5.07 -104.62 -0.53 0.08 16 14 C 0.01 0.14 4.17 -29.04 -0.12 0.02 16 15 C -0.52 -14.27 9.65 -34.44 -0.33 -14.60 16 16 H 0.08 2.28 7.98 -52.49 -0.42 1.86 16 17 C 0.07 2.02 5.47 -17.82 -0.10 1.93 16 18 N -0.89 -26.80 13.96 55.43 0.77 -26.03 16 19 Si 0.88 20.55 27.47 -169.99 -4.67 15.88 16 20 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 21 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 22 H -0.26 -5.86 6.54 56.52 0.37 -5.49 16 23 C -0.14 -2.56 9.70 -39.58 -0.38 -2.95 16 24 C -0.02 -0.32 9.52 -39.58 -0.38 -0.70 16 25 C -0.15 -1.18 7.01 -25.82 -0.18 -1.36 16 26 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.06 0.42 7.34 -51.93 -0.38 0.04 16 29 H 0.06 0.33 7.96 -51.93 -0.41 -0.08 16 30 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 31 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.07 0.51 8.10 -51.93 -0.42 0.09 16 33 H 0.09 0.53 8.10 -51.93 -0.42 0.11 16 34 H 0.12 1.04 7.28 -51.93 -0.38 0.67 16 35 H 0.42 2.99 8.93 -34.47 -0.31 2.68 16 36 H 0.13 1.71 7.61 -52.49 -0.40 1.31 16 37 H 0.13 2.14 8.06 -52.49 -0.42 1.72 16 38 H 0.03 0.74 7.14 -51.93 -0.37 0.37 16 39 H 0.03 0.63 7.51 -51.93 -0.39 0.24 16 40 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 41 H 0.13 2.17 8.06 -52.49 -0.42 1.75 16 42 H 0.13 1.78 7.62 -52.49 -0.40 1.38 16 43 H 0.09 0.68 7.98 -51.93 -0.41 0.27 16 44 H 0.08 0.68 8.10 -51.93 -0.42 0.26 16 LS Contribution 372.90 15.07 5.62 5.62 Total: -1.00 -33.59 372.90 -10.71 -44.30 By element: Atomic # 1 Polarization: 8.69 SS G_CDS: -6.84 Total: 1.85 kcal Atomic # 6 Polarization: -31.21 SS G_CDS: -3.01 Total: -34.22 kcal Atomic # 7 Polarization: -37.25 SS G_CDS: 0.75 Total: -36.50 kcal Atomic # 8 Polarization: -30.80 SS G_CDS: -1.95 Total: -32.75 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -4.67 Total: 15.88 kcal Atomic # 16 Polarization: 36.43 SS G_CDS: -0.61 Total: 35.82 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -33.59 -10.71 -44.30 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885309783.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.691 kcal (2) G-P(sol) polarization free energy of solvation -33.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds