Wall clock time and date at job start Tue Mar 31 2020 13:47:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 112.85208 * 2 1 4 4 C 1.53784 * 113.61254 * 131.19608 * 2 1 3 5 5 C 1.53786 * 87.08086 * 89.11239 * 4 2 1 6 6 N 1.46498 * 113.61226 * 139.97733 * 5 4 2 7 7 S 1.65607 * 119.99651 * 146.53187 * 6 5 4 8 8 O 1.42097 * 106.40132 * 311.45977 * 7 6 5 9 9 O 1.42107 * 106.39904 * 178.54249 * 7 6 5 10 10 C 1.76199 * 107.21942 * 65.00149 * 7 6 5 11 11 C 1.38231 * 119.99760 * 269.72967 * 10 7 6 12 12 C 1.38241 * 119.99883 * 179.76667 * 11 10 7 13 13 C 1.38241 * 119.99699 * 0.48083 * 12 11 10 14 14 C 1.50696 * 120.00100 * 179.76722 * 13 12 11 15 15 C 1.50700 * 109.47278 * 270.02483 * 14 13 12 16 16 H 1.07999 * 120.00091 * 359.97438 * 15 14 13 17 17 C 1.37876 * 119.99925 * 179.97438 * 15 14 13 18 18 N 1.31518 * 120.00210 * 179.97438 * 17 15 14 19 19 Si 1.86800 * 119.99997 * 0.02562 * 17 15 14 20 20 H 1.48499 * 109.47454 * 89.99709 * 19 17 15 21 21 H 1.48504 * 109.47211 * 209.99801 * 19 17 15 22 22 H 1.48497 * 109.47344 * 329.99568 * 19 17 15 23 23 C 1.38241 * 119.99845 * 359.79388 * 13 12 11 24 24 C 1.38234 * 119.99670 * 89.99861 * 10 7 6 25 25 C 1.53786 * 87.17054 * 25.39271 * 5 4 2 26 26 H 1.09000 * 109.47179 * 288.80977 * 1 2 3 27 27 H 1.08999 * 109.47158 * 48.80289 * 1 2 3 28 28 H 1.09000 * 109.47535 * 168.80618 * 1 2 3 29 29 H 1.09000 * 109.46910 * 191.19837 * 3 2 1 30 30 H 1.08995 * 109.47054 * 311.19154 * 3 2 1 31 31 H 1.08997 * 109.47001 * 71.19468 * 3 2 1 32 32 H 1.08996 * 113.61579 * 334.56993 * 4 2 1 33 33 H 1.08992 * 113.61284 * 203.66148 * 4 2 1 34 34 H 1.09000 * 113.61958 * 270.80099 * 5 4 2 35 35 H 0.96995 * 120.00383 * 326.53150 * 6 5 4 36 36 H 1.08001 * 120.00603 * 359.97438 * 11 10 7 37 37 H 1.07994 * 120.00551 * 180.24981 * 12 11 10 38 38 H 1.08998 * 109.46918 * 30.02380 * 14 13 12 39 39 H 1.08994 * 109.47290 * 150.02093 * 14 13 12 40 40 H 0.96996 * 120.00021 * 179.97438 * 18 17 15 41 41 H 1.07997 * 119.99768 * 179.97438 * 23 13 12 42 42 H 1.07995 * 120.00639 * 0.02562 * 24 10 7 43 43 H 1.08993 * 113.61376 * 89.15945 * 25 5 4 44 44 H 1.09000 * 113.60786 * 220.05922 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1242 1.4099 0.0000 4 6 2.1460 -0.9281 1.0603 5 6 2.0928 -2.0426 0.0020 6 7 3.2738 -2.9094 0.0028 7 16 3.1227 -4.5150 -0.3736 8 8 2.0392 -5.0087 0.4019 9 8 4.4319 -5.0650 -0.3185 10 6 2.6134 -4.6103 -2.0576 11 6 1.2675 -4.6264 -2.3728 12 6 0.8679 -4.6963 -3.6943 13 6 1.8142 -4.7601 -4.7001 14 6 1.3786 -4.8416 -6.1404 15 6 1.2249 -6.2871 -6.5377 16 1 1.4232 -7.0687 -5.8193 17 6 0.8310 -6.6119 -7.8185 18 7 0.6973 -7.8734 -8.1655 19 14 0.4887 -5.2601 -9.0614 20 1 1.7381 -4.9338 -9.7948 21 1 -0.5438 -5.7222 -10.0237 22 1 -0.0006 -4.0495 -8.3541 23 6 3.1600 -4.7498 -4.3845 24 6 3.5596 -4.6746 -3.0633 25 6 2.1448 -0.9318 -1.0602 26 1 -0.3633 0.3313 0.9728 27 1 -0.3633 0.6769 -0.7733 28 1 -0.3634 -1.0081 -0.1995 29 1 3.1942 1.3532 -0.1996 30 1 1.6416 2.0075 -0.7733 31 1 1.9600 1.8733 0.9728 32 1 1.4945 -1.1068 1.9156 33 1 3.1590 -0.6486 1.3496 34 1 1.1572 -2.6020 0.0034 35 1 4.1443 -2.5429 0.2238 36 1 0.5282 -4.5809 -1.5868 37 1 -0.1835 -4.7047 -3.9408 38 1 0.4247 -4.3282 -6.2611 39 1 2.1285 -4.3684 -6.7741 40 1 0.4199 -8.1018 -9.0664 41 1 3.8993 -4.8001 -5.1702 42 1 4.6110 -4.6669 -2.8168 43 1 3.1575 -0.6534 -1.3517 44 1 1.4923 -1.1135 -1.9142 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885309783.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:47:07 Heat of formation + Delta-G solvation = -69.931174 kcal Electronic energy + Delta-G solvation = -25201.605745 eV Core-core repulsion = 21630.805828 eV Total energy + Delta-G solvation = -3570.799917 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.71140 -40.24242 -38.33628 -36.98442 -35.54983 -34.92085 -33.55052 -31.97083 -30.20924 -29.71156 -28.21820 -26.60800 -25.28111 -23.79760 -23.00932 -22.31566 -20.68395 -19.34980 -19.03617 -18.88902 -18.32999 -17.38603 -16.76763 -16.51338 -16.00201 -15.85235 -15.69321 -15.35587 -15.10491 -14.63412 -14.47851 -14.36822 -14.15370 -13.87640 -13.66587 -13.61745 -13.44815 -13.26611 -13.23868 -13.16459 -12.91704 -12.58814 -12.55568 -12.50392 -12.39457 -12.07691 -11.93567 -11.72610 -11.62537 -11.55055 -11.07635 -10.97123 -10.83425 -10.33531 -9.96328 -9.92607 -8.34328 -6.41727 -0.62556 -0.07651 0.39370 1.35722 1.37423 1.48887 2.01948 2.32006 2.53495 2.81194 3.00123 3.30413 3.57230 3.61951 3.85070 3.86550 3.90145 3.97420 4.07859 4.22101 4.38851 4.45653 4.46330 4.71961 4.74289 4.78529 4.84546 4.84731 4.95934 4.99386 5.00258 5.04272 5.09412 5.10244 5.16838 5.23803 5.28694 5.31689 5.37151 5.48741 5.52448 5.66144 5.77470 5.93663 6.13210 6.18419 6.65008 7.22309 8.82223 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.014726 B = 0.003428 C = 0.002981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1900.879689 B = 8166.248611 C = 9389.625419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.085 4.085 3 C -0.132 4.132 4 C -0.127 4.127 5 C 0.114 3.886 6 N -1.088 6.088 7 S 2.720 3.280 8 O -0.985 6.985 9 O -0.989 6.989 10 C -0.696 4.696 11 C -0.021 4.021 12 C -0.152 4.152 13 C -0.002 4.002 14 C 0.012 3.988 15 C -0.527 4.527 16 H 0.026 0.974 17 C 0.009 3.991 18 N -0.948 5.948 19 Si 0.954 3.046 20 H -0.264 1.264 21 H -0.284 1.284 22 H -0.241 1.241 23 C -0.154 4.154 24 C -0.021 4.021 25 C -0.148 4.148 26 H 0.067 0.933 27 H 0.060 0.940 28 H 0.055 0.945 29 H 0.059 0.941 30 H 0.055 0.945 31 H 0.063 0.937 32 H 0.080 0.920 33 H 0.101 0.899 34 H 0.113 0.887 35 H 0.429 0.571 36 H 0.154 0.846 37 H 0.134 0.866 38 H 0.041 0.959 39 H 0.039 0.961 40 H 0.269 0.731 41 H 0.133 0.867 42 H 0.154 0.846 43 H 0.095 0.905 44 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.240 21.391 18.235 28.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.086 4.086 3 C -0.189 4.189 4 C -0.166 4.166 5 C 0.007 3.993 6 N -0.850 5.850 7 S 2.811 3.189 8 O -0.975 6.975 9 O -0.979 6.979 10 C -0.783 4.783 11 C -0.041 4.041 12 C -0.171 4.171 13 C -0.002 4.002 14 C -0.025 4.025 15 C -0.564 4.564 16 H 0.044 0.956 17 C -0.188 4.188 18 N -0.588 5.588 19 Si 0.776 3.224 20 H -0.189 1.189 21 H -0.209 1.209 22 H -0.164 1.164 23 C -0.173 4.173 24 C -0.040 4.040 25 C -0.188 4.188 26 H 0.086 0.914 27 H 0.079 0.921 28 H 0.074 0.926 29 H 0.078 0.922 30 H 0.074 0.926 31 H 0.082 0.918 32 H 0.099 0.901 33 H 0.119 0.881 34 H 0.131 0.869 35 H 0.267 0.733 36 H 0.171 0.829 37 H 0.152 0.848 38 H 0.059 0.941 39 H 0.057 0.943 40 H 0.078 0.922 41 H 0.151 0.849 42 H 0.171 0.829 43 H 0.113 0.887 44 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 3.181 20.468 18.624 27.856 hybrid contribution -0.082 -0.077 -1.697 1.701 sum 3.099 20.391 16.927 26.682 Atomic orbital electron populations 1.21691 0.92895 1.02170 1.02577 1.21676 0.95768 0.94905 0.96225 1.21691 1.00592 0.94542 1.02117 1.23469 1.02780 0.93652 0.96739 1.22575 0.87524 0.90252 0.98984 1.55195 1.17266 1.27650 1.84843 1.00885 0.72224 0.72846 0.72984 1.93538 1.56909 1.78982 1.68089 1.93537 1.39725 1.77346 1.87294 1.30763 1.01791 1.21433 1.24314 1.21015 0.94155 0.91932 0.96951 1.21335 1.00280 1.02853 0.92638 1.20575 0.94127 0.88770 0.96730 1.18819 0.97797 0.95799 0.90085 1.21071 1.46705 0.91322 0.97344 0.95570 1.26013 0.94225 0.98098 1.00506 1.70058 1.48633 1.19460 1.20617 0.85612 0.78804 0.79675 0.78318 1.18894 1.20936 1.16435 1.21347 0.95816 1.02928 0.97220 1.21009 0.99550 0.91739 0.91697 1.23721 1.02316 0.95582 0.97150 0.91387 0.92088 0.92572 0.92165 0.92632 0.91839 0.90134 0.88053 0.86943 0.73281 0.82884 0.84816 0.94054 0.94276 0.92201 0.84890 0.82887 0.88699 0.91531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.56 9.07 71.98 0.65 -0.91 16 2 C -0.08 -0.97 1.39 -51.60 -0.07 -1.04 16 3 C -0.13 -1.27 9.20 71.98 0.66 -0.61 16 4 C -0.13 -1.41 7.01 31.12 0.22 -1.19 16 5 C 0.11 1.71 4.07 45.52 0.19 1.90 16 6 N -1.09 -17.89 5.79 -167.18 -0.97 -18.85 16 7 S 2.72 68.65 5.71 -56.49 -0.32 68.33 16 8 O -0.99 -29.75 16.79 -128.00 -2.15 -31.90 16 9 O -0.99 -29.85 17.28 -128.00 -2.21 -32.06 16 10 C -0.70 -20.25 5.95 22.27 0.13 -20.12 16 11 C -0.02 -0.65 9.52 22.27 0.21 -0.43 16 12 C -0.15 -5.37 9.70 22.27 0.22 -5.16 16 13 C 0.00 -0.07 5.07 -19.86 -0.10 -0.17 16 14 C 0.01 0.55 4.17 29.10 0.12 0.67 16 15 C -0.53 -29.84 9.65 25.60 0.25 -29.60 16 16 H 0.03 1.68 7.98 -2.91 -0.02 1.66 16 17 C 0.01 0.52 5.47 84.65 0.46 0.98 16 18 N -0.95 -58.78 13.96 21.45 0.30 -58.48 16 19 Si 0.95 42.30 27.47 68.60 1.88 44.19 16 20 H -0.26 -11.21 7.11 99.48 0.71 -10.50 16 21 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 22 H -0.24 -9.69 6.54 99.48 0.65 -9.04 16 23 C -0.15 -5.50 9.70 22.27 0.22 -5.29 16 24 C -0.02 -0.64 9.52 22.27 0.21 -0.43 16 25 C -0.15 -2.08 7.01 31.18 0.22 -1.86 16 26 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 27 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 28 H 0.06 0.69 7.34 -2.39 -0.02 0.67 16 29 H 0.06 0.54 7.96 -2.39 -0.02 0.52 16 30 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 31 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 32 H 0.08 0.85 8.10 -2.39 -0.02 0.83 16 33 H 0.10 0.87 8.10 -2.39 -0.02 0.85 16 34 H 0.11 1.80 7.28 -2.39 -0.02 1.79 16 35 H 0.43 4.92 8.93 -96.75 -0.86 4.06 16 36 H 0.15 3.81 7.61 -2.91 -0.02 3.79 16 37 H 0.13 4.44 8.06 -2.91 -0.02 4.42 16 38 H 0.04 1.78 7.14 -2.39 -0.02 1.76 16 39 H 0.04 1.67 7.51 -2.39 -0.02 1.65 16 40 H 0.27 15.48 8.31 -92.71 -0.77 14.71 16 41 H 0.13 4.48 8.06 -2.91 -0.02 4.46 16 42 H 0.15 3.91 7.62 -2.91 -0.02 3.89 16 43 H 0.09 1.22 7.98 -2.39 -0.02 1.20 16 44 H 0.07 1.08 8.10 -2.39 -0.02 1.06 16 Total: -1.00 -73.83 372.90 0.19 -73.64 By element: Atomic # 1 Polarization: 18.31 SS G_CDS: 0.07 Total: 18.38 kcal Atomic # 6 Polarization: -66.83 SS G_CDS: 3.58 Total: -63.25 kcal Atomic # 7 Polarization: -76.66 SS G_CDS: -0.67 Total: -77.33 kcal Atomic # 8 Polarization: -59.60 SS G_CDS: -4.36 Total: -63.96 kcal Atomic # 14 Polarization: 42.30 SS G_CDS: 1.88 Total: 44.19 kcal Atomic # 16 Polarization: 68.65 SS G_CDS: -0.32 Total: 68.33 kcal Total: -73.83 0.19 -73.64 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885309783.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.707 kcal (2) G-P(sol) polarization free energy of solvation -73.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.638 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds