Wall clock time and date at job start Tue Mar 31 2020 13:46:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53782 * 113.61808 * 2 1 4 4 C 1.53781 * 87.08126 * 219.94019 * 3 2 1 5 5 C 1.52994 * 113.61635 * 139.98135 * 4 3 2 6 6 N 1.46506 * 109.47138 * 176.52470 * 5 4 3 7 7 S 1.65596 * 119.99651 * 164.99981 * 6 5 4 8 8 O 1.42102 * 106.40754 * 311.46052 * 7 6 5 9 9 O 1.42109 * 106.39910 * 178.54094 * 7 6 5 10 10 C 1.76199 * 107.22174 * 65.00135 * 7 6 5 11 11 C 1.38238 * 119.99900 * 89.99763 * 10 7 6 12 12 C 1.38235 * 120.00108 * 180.02562 * 11 10 7 13 13 C 1.38243 * 119.99617 * 0.02562 * 12 11 10 14 14 C 1.50706 * 119.99586 * 179.97438 * 13 12 11 15 15 C 1.50703 * 109.47001 * 89.99822 * 14 13 12 16 16 H 1.08005 * 119.99817 * 359.97438 * 15 14 13 17 17 C 1.37871 * 120.00081 * 179.97438 * 15 14 13 18 18 N 1.31510 * 120.00254 * 180.02562 * 17 15 14 19 19 Si 1.86811 * 119.99850 * 0.02562 * 17 15 14 20 20 H 1.48503 * 109.46778 * 89.99559 * 19 17 15 21 21 H 1.48493 * 109.46886 * 209.99446 * 19 17 15 22 22 H 1.48492 * 109.47026 * 329.99859 * 19 17 15 23 23 C 1.38233 * 120.00248 * 0.25361 * 13 12 11 24 24 C 1.38234 * 120.00018 * 269.97659 * 10 7 6 25 25 C 1.53777 * 87.17477 * 25.38581 * 4 3 2 26 26 H 1.09003 * 109.47359 * 59.99708 * 1 2 3 27 27 H 1.08999 * 109.47386 * 180.02562 * 1 2 3 28 28 H 1.09010 * 109.47057 * 300.00058 * 1 2 3 29 29 H 1.09000 * 112.85107 * 131.20066 * 2 1 3 30 30 H 1.08991 * 113.61424 * 105.38827 * 3 2 1 31 31 H 1.09003 * 113.61212 * 334.48675 * 3 2 1 32 32 H 1.09001 * 113.61097 * 270.80008 * 4 3 2 33 33 H 1.09006 * 109.47220 * 56.52949 * 5 4 3 34 34 H 1.08995 * 109.47303 * 296.52823 * 5 4 3 35 35 H 0.96996 * 120.00109 * 345.00148 * 6 5 4 36 36 H 1.08000 * 120.00578 * 359.97438 * 11 10 7 37 37 H 1.07999 * 120.00165 * 179.97438 * 12 11 10 38 38 H 1.09000 * 109.46646 * 209.99280 * 14 13 12 39 39 H 1.09000 * 109.47248 * 329.99998 * 14 13 12 40 40 H 0.97008 * 120.00053 * 180.02562 * 18 17 15 41 41 H 1.08004 * 119.99934 * 179.72684 * 23 13 12 42 42 H 1.07999 * 120.00024 * 0.02562 * 24 10 7 43 43 H 1.08998 * 113.61196 * 89.16253 * 25 4 3 44 44 H 1.09003 * 113.61527 * 220.06168 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.1460 1.4090 0.0000 4 6 3.1936 0.8655 -0.9860 5 6 3.5488 1.8463 -2.1052 6 7 4.6084 1.2730 -2.9388 7 16 4.9378 1.9263 -4.4244 8 8 3.6887 2.0662 -5.0872 9 8 6.0223 1.1800 -4.9594 10 6 5.5429 3.5589 -4.1537 11 6 6.8980 3.7748 -3.9863 12 6 7.3727 5.0555 -3.7735 13 6 6.4922 6.1203 -3.7275 14 6 7.0097 7.5164 -3.4949 15 6 7.3267 8.1618 -4.8193 16 1 7.1696 7.6154 -5.7376 17 6 7.8173 9.4497 -4.8587 18 7 8.0935 10.0131 -6.0145 19 14 8.0897 10.3944 -3.2703 20 1 9.4693 10.1488 -2.7787 21 1 7.9044 11.8464 -3.5201 22 1 7.1121 9.9389 -2.2496 23 6 5.1366 5.9036 -3.8891 24 6 4.6626 4.6238 -4.1092 25 6 2.1498 -0.1864 -1.3969 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8901 29 1 1.9532 -0.6616 0.7558 30 1 2.5638 1.7029 0.9628 31 1 1.4951 2.1702 -0.4302 32 1 4.0723 0.4418 -0.4997 33 1 3.8958 2.7837 -1.6703 34 1 2.6667 2.0343 -2.7171 35 1 5.1170 0.5108 -2.6206 36 1 7.5858 2.9429 -4.0210 37 1 8.4314 5.2242 -3.6423 38 1 6.2512 8.1034 -2.9770 39 1 7.9132 7.4724 -2.8867 40 1 8.4390 10.9191 -6.0422 41 1 4.4482 6.7349 -3.8488 42 1 3.6039 4.4550 -4.2399 43 1 1.4999 0.1378 -2.2097 44 1 2.5706 -1.1786 -1.5600 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885316508.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:46:49 Heat of formation + Delta-G solvation = -49.519585 kcal Electronic energy + Delta-G solvation = -24565.018971 eV Core-core repulsion = 20995.104167 eV Total energy + Delta-G solvation = -3569.914804 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.69044 -38.89305 -37.14777 -35.77329 -35.08957 -33.68759 -31.74657 -30.64945 -30.36667 -27.97563 -26.39056 -25.94450 -23.51631 -22.44824 -21.57589 -20.75043 -20.01366 -19.22322 -17.82201 -17.27261 -16.91807 -16.45844 -15.95683 -15.25091 -15.09245 -14.69039 -14.38309 -14.29557 -14.10467 -13.87634 -13.63980 -13.18244 -12.99274 -12.78967 -12.74149 -12.62740 -12.30339 -12.03943 -11.94742 -11.90063 -11.79746 -11.77757 -11.41898 -10.98385 -10.94541 -10.92699 -10.54333 -10.53432 -10.47045 -10.25213 -10.10664 -9.60320 -9.52173 -8.71288 -8.64331 -8.45629 -6.19216 -4.20815 0.48791 1.25767 1.72582 3.05420 3.19466 3.27969 3.28657 3.73686 4.04725 4.17678 4.24872 4.29766 4.30856 4.39896 4.53045 4.86178 5.01535 5.07948 5.12814 5.17853 5.18962 5.24828 5.34234 5.38744 5.45812 5.48058 5.52855 5.56818 5.67294 5.73685 5.78349 5.81538 5.82602 6.01380 6.15301 6.19981 6.23825 6.43453 6.68628 6.69940 6.80195 6.81884 7.28537 7.29313 7.52811 8.33795 8.84422 9.38945 10.93253 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.017494 B = 0.002798 C = 0.002544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1600.186134 B =10003.829154 C =11005.764109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.117 4.117 3 C -0.130 4.130 4 C -0.117 4.117 5 C 0.126 3.874 6 N -1.118 6.118 7 S 2.698 3.302 8 O -0.964 6.964 9 O -0.966 6.966 10 C -0.701 4.701 11 C -0.021 4.021 12 C -0.144 4.144 13 C 0.031 3.969 14 C 0.006 3.994 15 C -0.520 4.520 16 H 0.075 0.925 17 C 0.072 3.928 18 N -0.894 5.894 19 Si 0.879 3.121 20 H -0.275 1.275 21 H -0.285 1.285 22 H -0.265 1.265 23 C -0.143 4.143 24 C -0.024 4.024 25 C -0.134 4.134 26 H 0.057 0.943 27 H 0.053 0.947 28 H 0.055 0.945 29 H 0.087 0.913 30 H 0.069 0.931 31 H 0.086 0.914 32 H 0.096 0.904 33 H 0.068 0.932 34 H 0.081 0.919 35 H 0.416 0.584 36 H 0.131 0.869 37 H 0.130 0.870 38 H 0.034 0.966 39 H 0.029 0.971 40 H 0.266 0.734 41 H 0.130 0.870 42 H 0.131 0.869 43 H 0.086 0.914 44 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.610 -19.697 13.938 26.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.135 4.135 3 C -0.168 4.168 4 C -0.137 4.137 5 C -0.001 4.001 6 N -0.877 5.877 7 S 2.790 3.210 8 O -0.954 6.954 9 O -0.956 6.956 10 C -0.790 4.790 11 C -0.040 4.040 12 C -0.163 4.163 13 C 0.030 3.970 14 C -0.031 4.031 15 C -0.558 4.558 16 H 0.093 0.907 17 C -0.131 4.131 18 N -0.532 5.532 19 Si 0.706 3.294 20 H -0.200 1.200 21 H -0.211 1.211 22 H -0.189 1.189 23 C -0.162 4.162 24 C -0.043 4.043 25 C -0.171 4.171 26 H 0.076 0.924 27 H 0.072 0.928 28 H 0.074 0.926 29 H 0.106 0.894 30 H 0.088 0.912 31 H 0.105 0.895 32 H 0.115 0.885 33 H 0.086 0.914 34 H 0.099 0.901 35 H 0.250 0.750 36 H 0.149 0.851 37 H 0.147 0.853 38 H 0.052 0.948 39 H 0.047 0.953 40 H 0.076 0.924 41 H 0.148 0.852 42 H 0.149 0.851 43 H 0.105 0.895 44 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -11.779 -19.783 12.964 26.423 hybrid contribution 0.782 1.024 1.182 1.749 sum -10.997 -18.759 14.147 25.942 Atomic orbital electron populations 1.21728 0.94787 1.01644 1.01897 1.22489 0.95693 0.97477 0.97873 1.23017 0.97541 0.96974 0.99270 1.22709 0.97823 0.96983 0.96153 1.21346 0.90025 0.96353 0.92326 1.55541 1.47915 1.45480 1.38806 1.01569 0.73426 0.73660 0.72304 1.93558 1.43428 1.86882 1.71501 1.93571 1.55266 1.70541 1.76252 1.30383 1.03091 1.21899 1.23631 1.20771 0.92894 0.97966 0.92386 1.21227 1.00361 0.91955 1.02716 1.20702 0.92881 0.96889 0.86485 1.18985 0.96695 0.88565 0.98844 1.20818 1.44401 0.99159 0.91390 0.90671 1.24989 0.94591 0.97236 0.96244 1.69889 1.43980 1.14721 1.24576 0.86786 0.79175 0.79363 0.84067 1.20047 1.21067 1.18940 1.21216 0.95933 0.96539 1.02506 1.20784 0.98549 0.92241 0.92756 1.23182 0.97755 0.99143 0.97008 0.92412 0.92768 0.92587 0.89447 0.91193 0.89536 0.88544 0.91353 0.90098 0.75016 0.85111 0.85255 0.94813 0.95259 0.92368 0.85248 0.85132 0.89545 0.91460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.81 9.71 37.15 0.36 -0.45 16 2 C -0.12 -0.69 4.35 -89.72 -0.39 -1.08 16 3 C -0.13 -0.79 7.21 -25.92 -0.19 -0.98 16 4 C -0.12 -0.77 3.78 -89.81 -0.34 -1.11 16 5 C 0.13 1.04 6.05 -4.04 -0.02 1.02 16 6 N -1.12 -10.40 6.00 -10.61 -0.06 -10.46 16 7 S 2.70 36.27 5.74 -107.50 -0.62 35.65 16 8 O -0.96 -15.25 16.75 -57.17 -0.96 -16.21 16 9 O -0.97 -15.38 17.28 -57.17 -0.99 -16.37 16 10 C -0.70 -10.72 5.95 -39.58 -0.24 -10.96 16 11 C -0.02 -0.33 9.52 -39.58 -0.38 -0.71 16 12 C -0.14 -2.59 9.70 -39.58 -0.38 -2.97 16 13 C 0.03 0.61 5.07 -104.62 -0.53 0.08 16 14 C 0.01 0.14 4.17 -29.03 -0.12 0.02 16 15 C -0.52 -14.27 9.65 -34.44 -0.33 -14.61 16 16 H 0.08 2.28 7.98 -52.48 -0.42 1.87 16 17 C 0.07 2.02 5.47 -17.82 -0.10 1.92 16 18 N -0.89 -26.78 13.96 55.43 0.77 -26.01 16 19 Si 0.88 20.57 27.47 -169.99 -4.67 15.90 16 20 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 21 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 22 H -0.26 -5.86 6.54 56.52 0.37 -5.49 16 23 C -0.14 -2.55 9.70 -39.58 -0.38 -2.94 16 24 C -0.02 -0.37 9.52 -39.58 -0.38 -0.75 16 25 C -0.13 -0.88 7.20 -25.83 -0.19 -1.07 16 26 H 0.06 0.34 7.96 -51.93 -0.41 -0.08 16 27 H 0.05 0.29 8.14 -51.93 -0.42 -0.14 16 28 H 0.06 0.30 8.14 -51.92 -0.42 -0.13 16 29 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.09 0.53 8.06 -51.93 -0.42 0.11 16 32 H 0.10 0.57 8.14 -51.93 -0.42 0.14 16 33 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.08 0.70 7.48 -51.93 -0.39 0.31 16 35 H 0.42 2.98 8.65 -34.47 -0.30 2.68 16 36 H 0.13 1.79 7.62 -52.49 -0.40 1.39 16 37 H 0.13 2.18 8.06 -52.49 -0.42 1.76 16 38 H 0.03 0.74 7.14 -51.93 -0.37 0.37 16 39 H 0.03 0.64 7.51 -51.93 -0.39 0.25 16 40 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 41 H 0.13 2.15 8.06 -52.48 -0.42 1.73 16 42 H 0.13 1.74 7.62 -52.49 -0.40 1.34 16 43 H 0.09 0.62 7.75 -51.93 -0.40 0.22 16 44 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 LS Contribution 374.20 15.07 5.64 5.64 Total: -1.00 -33.64 374.20 -11.36 -45.00 By element: Atomic # 1 Polarization: 8.31 SS G_CDS: -6.87 Total: 1.43 kcal Atomic # 6 Polarization: -30.98 SS G_CDS: -3.60 Total: -34.58 kcal Atomic # 7 Polarization: -37.18 SS G_CDS: 0.71 Total: -36.47 kcal Atomic # 8 Polarization: -30.63 SS G_CDS: -1.95 Total: -32.58 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -4.67 Total: 15.90 kcal Atomic # 16 Polarization: 36.27 SS G_CDS: -0.62 Total: 35.65 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -33.64 -11.36 -45.00 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885316508.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.518 kcal (2) G-P(sol) polarization free energy of solvation -33.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.002 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds