Wall clock time and date at job start Tue Mar 31 2020 14:18:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38288 * 119.92754 * 2 1 4 4 C 1.38104 * 120.07806 * 179.97438 * 3 2 1 5 5 C 1.38913 * 119.92449 * 0.02562 * 4 3 2 6 6 N 1.39673 * 120.07582 * 179.97438 * 5 4 3 7 7 C 1.46490 * 120.00337 * 85.27475 * 6 5 4 8 8 C 1.53781 * 113.61484 * 325.49129 * 7 6 5 9 9 C 1.53953 * 87.02058 * 89.22712 * 8 7 6 10 10 C 1.53782 * 87.11160 * 25.36578 * 9 8 7 11 11 S 1.65604 * 119.99521 * 265.27934 * 6 5 4 12 12 O 1.42090 * 104.27998 * 20.56898 * 11 6 5 13 13 O 1.42099 * 104.27565 * 148.42775 * 11 6 5 14 14 C 1.81402 * 104.44851 * 264.49735 * 11 6 5 15 15 C 1.52996 * 109.47081 * 180.02562 * 14 11 6 16 16 C 1.50706 * 109.46892 * 180.02562 * 15 14 11 17 17 H 1.08000 * 120.00114 * 359.97438 * 16 15 14 18 18 C 1.37877 * 119.99654 * 179.97438 * 16 15 14 19 19 N 1.31519 * 119.99467 * 179.97438 * 18 16 15 20 20 Si 1.86797 * 120.00267 * 359.97438 * 18 16 15 21 21 H 1.48497 * 109.47480 * 90.00145 * 20 18 16 22 22 H 1.48507 * 109.46980 * 210.00251 * 20 18 16 23 23 H 1.48502 * 109.47074 * 329.99740 * 20 18 16 24 24 C 1.38910 * 119.84765 * 0.25041 * 5 4 3 25 25 C 1.38102 * 119.92791 * 359.48982 * 24 5 4 26 26 H 1.09005 * 109.46947 * 89.99755 * 1 2 3 27 27 H 1.08998 * 109.47471 * 210.00081 * 1 2 3 28 28 H 1.09002 * 109.47517 * 330.00171 * 1 2 3 29 29 H 1.08004 * 119.96293 * 359.95642 * 3 2 1 30 30 H 1.08001 * 120.03860 * 180.02562 * 4 3 2 31 31 H 1.08996 * 112.85397 * 194.29043 * 7 6 5 32 32 H 1.09008 * 113.61553 * 203.74541 * 8 7 6 33 33 H 1.09002 * 113.61547 * 334.64585 * 8 7 6 34 34 H 1.09004 * 113.53704 * 270.81077 * 9 8 7 35 35 H 1.09006 * 113.66505 * 139.93244 * 9 8 7 36 36 H 1.08999 * 113.61077 * 220.09451 * 10 9 8 37 37 H 1.08995 * 113.69219 * 89.19866 * 10 9 8 38 38 H 1.09008 * 109.46771 * 300.00476 * 14 11 6 39 39 H 1.08997 * 109.47301 * 59.99931 * 14 11 6 40 40 H 1.08995 * 109.46923 * 299.99584 * 15 14 11 41 41 H 1.08995 * 109.47519 * 60.00055 * 15 14 11 42 42 H 0.96999 * 119.99256 * 179.97438 * 19 18 16 43 43 H 1.08006 * 120.03379 * 179.73183 * 24 5 4 44 44 H 1.08000 * 119.96523 * 180.25180 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1969 1.1985 0.0000 4 6 3.5779 1.2021 0.0005 5 6 4.2740 0.0000 0.0005 6 7 5.6708 0.0000 0.0005 7 6 6.4033 0.1045 1.2648 8 6 5.7058 0.9918 2.3094 9 6 4.9725 -0.2774 2.7800 10 6 6.1592 -1.0776 2.2178 11 16 6.4987 -0.1181 -1.4288 12 8 5.5573 0.2861 -2.4135 13 8 7.6900 0.6238 -1.2061 14 6 6.8708 -1.8860 -1.5917 15 6 7.6444 -2.1269 -2.8895 16 6 7.9530 -3.5958 -3.0250 17 1 7.6300 -4.2882 -2.2617 18 6 8.6476 -4.0557 -4.1236 19 7 8.9174 -5.3375 -4.2416 20 14 9.2056 -2.8583 -5.4443 21 1 10.5605 -2.3499 -5.1112 22 1 9.2462 -3.5524 -6.7566 23 1 8.2536 -1.7208 -5.5153 24 6 3.5779 -1.2020 -0.0053 25 6 2.1969 -1.1985 -0.0004 26 1 -0.3633 0.0000 -1.0277 27 1 -0.3634 -0.8899 0.5138 28 1 -0.3634 0.8900 0.5138 29 1 1.6550 2.1328 -0.0007 30 1 4.1161 2.1385 0.0010 31 1 7.4579 0.3416 1.1247 32 1 6.3853 1.4052 3.0548 33 1 5.0461 1.7424 1.8741 34 1 4.0351 -0.4587 2.2541 35 1 4.8720 -0.3484 3.8631 36 1 5.8648 -1.9953 1.7085 37 1 6.9635 -1.2319 2.9370 38 1 7.4744 -2.2098 -0.7437 39 1 5.9400 -2.4528 -1.6125 40 1 7.0411 -1.8031 -3.7375 41 1 8.5752 -1.5602 -2.8682 42 1 9.4057 -5.6611 -5.0147 43 1 4.1161 -2.1384 -0.0097 44 1 1.6550 -2.1327 -0.0008 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885517392.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:18:58 Heat of formation + Delta-G solvation = -24.976945 kcal Electronic energy + Delta-G solvation = -26145.671032 eV Core-core repulsion = 22576.820477 eV Total energy + Delta-G solvation = -3568.850555 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.50207 -38.40792 -36.75284 -35.62250 -34.44864 -33.96729 -31.52038 -31.40602 -31.06596 -26.82959 -26.07294 -25.68316 -24.45483 -22.73963 -21.71555 -21.08399 -19.99476 -18.92454 -17.93107 -16.99145 -16.51014 -15.92782 -15.68487 -15.41909 -15.19018 -14.96073 -14.54971 -14.29825 -13.83724 -13.77560 -13.55116 -13.49590 -13.02542 -12.82259 -12.48816 -12.37744 -12.20792 -12.03927 -11.91833 -11.75895 -11.68495 -11.48655 -11.36191 -11.26343 -11.20136 -10.85660 -10.60565 -10.45889 -10.34844 -10.15572 -9.76524 -9.45806 -9.05396 -8.99163 -8.67210 -8.51040 -6.17630 -4.18899 0.49888 1.18924 1.32993 2.76460 3.25796 3.33171 3.37636 3.58177 4.11128 4.32271 4.35061 4.53981 4.57172 4.73416 4.75489 4.80924 4.84276 4.89047 5.03851 5.13969 5.20038 5.30563 5.38788 5.43221 5.52188 5.54838 5.59363 5.60501 5.65132 5.76464 5.82079 5.90411 5.91282 5.97449 6.00967 6.18680 6.25697 6.40323 6.45126 6.48756 6.62891 6.79065 6.91401 7.08224 7.53101 8.35364 8.83241 9.42048 10.94715 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.015114 B = 0.004153 C = 0.003814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1852.144780 B = 6740.767099 C = 7339.402592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.086 4.086 3 C -0.113 4.113 4 C -0.101 4.101 5 C 0.153 3.847 6 N -0.943 5.943 7 C 0.120 3.880 8 C -0.145 4.145 9 C -0.143 4.143 10 C -0.157 4.157 11 S 2.580 3.420 12 O -0.951 6.951 13 O -0.959 6.959 14 C -0.579 4.579 15 C -0.006 4.006 16 C -0.518 4.518 17 H 0.078 0.922 18 C 0.073 3.927 19 N -0.895 5.895 20 Si 0.868 3.132 21 H -0.271 1.271 22 H -0.281 1.281 23 H -0.262 1.262 24 C -0.116 4.116 25 C -0.111 4.111 26 H 0.071 0.929 27 H 0.066 0.934 28 H 0.065 0.935 29 H 0.124 0.876 30 H 0.124 0.876 31 H 0.116 0.884 32 H 0.090 0.910 33 H 0.075 0.925 34 H 0.087 0.913 35 H 0.064 0.936 36 H 0.075 0.925 37 H 0.092 0.908 38 H 0.127 0.873 39 H 0.126 0.874 40 H 0.032 0.968 41 H 0.028 0.972 42 H 0.266 0.734 43 H 0.129 0.871 44 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.865 11.653 14.752 23.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.086 4.086 3 C -0.132 4.132 4 C -0.121 4.121 5 C 0.060 3.940 6 N -0.772 5.772 7 C 0.014 3.986 8 C -0.184 4.184 9 C -0.181 4.181 10 C -0.196 4.196 11 S 2.681 3.319 12 O -0.942 6.942 13 O -0.949 6.949 14 C -0.713 4.713 15 C -0.046 4.046 16 C -0.557 4.557 17 H 0.096 0.904 18 C -0.130 4.130 19 N -0.533 5.533 20 Si 0.694 3.306 21 H -0.196 1.196 22 H -0.207 1.207 23 H -0.186 1.186 24 C -0.137 4.137 25 C -0.129 4.129 26 H 0.090 0.910 27 H 0.085 0.915 28 H 0.084 0.916 29 H 0.142 0.858 30 H 0.142 0.858 31 H 0.133 0.867 32 H 0.108 0.892 33 H 0.093 0.907 34 H 0.106 0.894 35 H 0.082 0.918 36 H 0.094 0.906 37 H 0.110 0.890 38 H 0.145 0.855 39 H 0.144 0.856 40 H 0.050 0.950 41 H 0.046 0.954 42 H 0.076 0.924 43 H 0.147 0.853 44 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -13.524 12.293 14.067 23.063 hybrid contribution 0.408 -0.224 -0.473 0.664 sum -13.116 12.069 13.594 22.416 Atomic orbital electron populations 1.20791 0.91159 1.02635 1.02461 1.19957 0.96120 0.93143 0.99422 1.20896 0.93488 0.97681 1.01149 1.21349 0.94277 0.97556 0.98953 1.17083 0.82024 0.93068 1.01837 1.55398 1.11218 1.88617 1.21953 1.21900 0.96322 0.97545 0.82783 1.23275 0.99848 0.97304 0.98010 1.23006 0.98445 0.96110 1.00491 1.23405 0.99102 0.98078 0.98995 1.06136 0.73779 0.79485 0.72452 1.93566 1.61788 1.81604 1.57192 1.93542 1.47857 1.69433 1.84114 1.30336 1.10731 1.20653 1.09553 1.19415 0.94835 1.00877 0.89435 1.20826 1.36857 0.89871 1.08195 0.90367 1.24972 0.95117 0.95135 0.97791 1.69881 1.40165 1.13249 1.29989 0.86947 0.80106 0.81894 0.81669 1.19613 1.20677 1.18640 1.21495 0.94699 0.97653 0.99847 1.20909 0.93459 0.97775 1.00778 0.91036 0.91527 0.91638 0.85807 0.85800 0.86664 0.89151 0.90682 0.89427 0.91759 0.90621 0.88985 0.85486 0.85604 0.94964 0.95406 0.92362 0.85306 0.85561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.83 10.01 36.00 0.36 -0.47 16 2 C -0.09 -0.87 5.88 -104.59 -0.62 -1.49 16 3 C -0.11 -1.21 9.69 -39.61 -0.38 -1.59 16 4 C -0.10 -1.26 8.45 -39.38 -0.33 -1.59 16 5 C 0.15 2.05 2.05 -83.79 -0.17 1.87 16 6 N -0.94 -13.35 2.94 -51.39 -0.15 -13.50 16 7 C 0.12 1.43 4.49 -67.12 -0.30 1.13 16 8 C -0.15 -1.44 7.40 -25.83 -0.19 -1.63 16 9 C -0.14 -1.37 7.53 -25.83 -0.19 -1.57 16 10 C -0.16 -1.59 7.77 -25.92 -0.20 -1.79 16 11 S 2.58 46.60 5.39 -107.50 -0.58 46.02 16 12 O -0.95 -19.68 17.14 -57.54 -0.99 -20.67 16 13 O -0.96 -19.17 16.78 -57.54 -0.97 -20.14 16 14 C -0.58 -10.90 6.12 37.16 0.23 -10.68 16 15 C -0.01 -0.15 4.05 -27.88 -0.11 -0.26 16 16 C -0.52 -14.50 9.66 -34.44 -0.33 -14.83 16 17 H 0.08 2.29 7.99 -52.49 -0.42 1.87 16 18 C 0.07 2.09 5.47 -17.82 -0.10 2.00 16 19 N -0.89 -27.02 13.96 55.43 0.77 -26.24 16 20 Si 0.87 21.57 27.47 -169.99 -4.67 16.90 16 21 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 22 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 23 H -0.26 -6.34 6.54 56.52 0.37 -5.97 16 24 C -0.12 -1.44 8.77 -39.38 -0.35 -1.79 16 25 C -0.11 -1.19 9.69 -39.61 -0.38 -1.58 16 26 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 27 H 0.07 0.42 8.08 -51.93 -0.42 0.00 16 28 H 0.06 0.40 8.08 -51.93 -0.42 -0.02 16 29 H 0.12 1.03 8.06 -52.48 -0.42 0.60 16 30 H 0.12 1.45 7.62 -52.49 -0.40 1.05 16 31 H 0.12 1.41 7.14 -51.93 -0.37 1.04 16 32 H 0.09 0.75 8.14 -51.92 -0.42 0.32 16 33 H 0.07 0.77 6.07 -51.93 -0.32 0.45 16 34 H 0.09 0.91 5.41 -51.93 -0.28 0.63 16 35 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 37 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16 38 H 0.13 2.15 8.14 -51.92 -0.42 1.72 16 39 H 0.13 2.17 8.14 -51.93 -0.42 1.75 16 40 H 0.03 0.78 7.20 -51.93 -0.37 0.41 16 41 H 0.03 0.66 7.57 -51.93 -0.39 0.26 16 42 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 43 H 0.13 1.48 8.06 -52.48 -0.42 1.06 16 44 H 0.13 1.10 8.06 -52.49 -0.42 0.68 16 LS Contribution 366.12 15.07 5.52 5.52 Total: -1.00 -34.05 366.12 -10.93 -44.97 By element: Atomic # 1 Polarization: 8.19 SS G_CDS: -6.79 Total: 1.41 kcal Atomic # 6 Polarization: -31.19 SS G_CDS: -3.08 Total: -34.26 kcal Atomic # 7 Polarization: -40.37 SS G_CDS: 0.62 Total: -39.74 kcal Atomic # 8 Polarization: -38.86 SS G_CDS: -1.95 Total: -40.81 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -4.67 Total: 16.90 kcal Atomic # 16 Polarization: 46.60 SS G_CDS: -0.58 Total: 46.02 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -34.05 -10.93 -44.97 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885517392.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.996 kcal (2) G-P(sol) polarization free energy of solvation -34.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds