Wall clock time and date at job start Tue Mar 31 2020 14:18:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38288 * 119.92754 * 2 1 4 4 C 1.38104 * 120.07806 * 179.97438 * 3 2 1 5 5 C 1.38913 * 119.92449 * 0.02562 * 4 3 2 6 6 N 1.39673 * 120.07582 * 179.97438 * 5 4 3 7 7 C 1.46490 * 120.00337 * 85.27475 * 6 5 4 8 8 C 1.53781 * 113.61484 * 325.49129 * 7 6 5 9 9 C 1.53953 * 87.02058 * 89.22712 * 8 7 6 10 10 C 1.53782 * 87.11160 * 25.36578 * 9 8 7 11 11 S 1.65604 * 119.99521 * 265.27934 * 6 5 4 12 12 O 1.42090 * 104.27998 * 20.56898 * 11 6 5 13 13 O 1.42099 * 104.27565 * 148.42775 * 11 6 5 14 14 C 1.81402 * 104.44851 * 264.49735 * 11 6 5 15 15 C 1.52996 * 109.47081 * 180.02562 * 14 11 6 16 16 C 1.50706 * 109.46892 * 180.02562 * 15 14 11 17 17 H 1.08000 * 120.00114 * 359.97438 * 16 15 14 18 18 C 1.37877 * 119.99654 * 179.97438 * 16 15 14 19 19 N 1.31519 * 119.99467 * 179.97438 * 18 16 15 20 20 Si 1.86797 * 120.00267 * 359.97438 * 18 16 15 21 21 H 1.48497 * 109.47480 * 90.00145 * 20 18 16 22 22 H 1.48507 * 109.46980 * 210.00251 * 20 18 16 23 23 H 1.48502 * 109.47074 * 329.99740 * 20 18 16 24 24 C 1.38910 * 119.84765 * 0.25041 * 5 4 3 25 25 C 1.38102 * 119.92791 * 359.48982 * 24 5 4 26 26 H 1.09005 * 109.46947 * 89.99755 * 1 2 3 27 27 H 1.08998 * 109.47471 * 210.00081 * 1 2 3 28 28 H 1.09002 * 109.47517 * 330.00171 * 1 2 3 29 29 H 1.08004 * 119.96293 * 359.95642 * 3 2 1 30 30 H 1.08001 * 120.03860 * 180.02562 * 4 3 2 31 31 H 1.08996 * 112.85397 * 194.29043 * 7 6 5 32 32 H 1.09008 * 113.61553 * 203.74541 * 8 7 6 33 33 H 1.09002 * 113.61547 * 334.64585 * 8 7 6 34 34 H 1.09004 * 113.53704 * 270.81077 * 9 8 7 35 35 H 1.09006 * 113.66505 * 139.93244 * 9 8 7 36 36 H 1.08999 * 113.61077 * 220.09451 * 10 9 8 37 37 H 1.08995 * 113.69219 * 89.19866 * 10 9 8 38 38 H 1.09008 * 109.46771 * 300.00476 * 14 11 6 39 39 H 1.08997 * 109.47301 * 59.99931 * 14 11 6 40 40 H 1.08995 * 109.46923 * 299.99584 * 15 14 11 41 41 H 1.08995 * 109.47519 * 60.00055 * 15 14 11 42 42 H 0.96999 * 119.99256 * 179.97438 * 19 18 16 43 43 H 1.08006 * 120.03379 * 179.73183 * 24 5 4 44 44 H 1.08000 * 119.96523 * 180.25180 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1969 1.1985 0.0000 4 6 3.5779 1.2021 0.0005 5 6 4.2740 0.0000 0.0005 6 7 5.6708 0.0000 0.0005 7 6 6.4033 0.1045 1.2648 8 6 5.7058 0.9918 2.3094 9 6 4.9725 -0.2774 2.7800 10 6 6.1592 -1.0776 2.2178 11 16 6.4987 -0.1181 -1.4288 12 8 5.5573 0.2861 -2.4135 13 8 7.6900 0.6238 -1.2061 14 6 6.8708 -1.8860 -1.5917 15 6 7.6444 -2.1269 -2.8895 16 6 7.9530 -3.5958 -3.0250 17 1 7.6300 -4.2882 -2.2617 18 6 8.6476 -4.0557 -4.1236 19 7 8.9174 -5.3375 -4.2416 20 14 9.2056 -2.8583 -5.4443 21 1 10.5605 -2.3499 -5.1112 22 1 9.2462 -3.5524 -6.7566 23 1 8.2536 -1.7208 -5.5153 24 6 3.5779 -1.2020 -0.0053 25 6 2.1969 -1.1985 -0.0004 26 1 -0.3633 0.0000 -1.0277 27 1 -0.3634 -0.8899 0.5138 28 1 -0.3634 0.8900 0.5138 29 1 1.6550 2.1328 -0.0007 30 1 4.1161 2.1385 0.0010 31 1 7.4579 0.3416 1.1247 32 1 6.3853 1.4052 3.0548 33 1 5.0461 1.7424 1.8741 34 1 4.0351 -0.4587 2.2541 35 1 4.8720 -0.3484 3.8631 36 1 5.8648 -1.9953 1.7085 37 1 6.9635 -1.2319 2.9370 38 1 7.4744 -2.2098 -0.7437 39 1 5.9400 -2.4528 -1.6125 40 1 7.0411 -1.8031 -3.7375 41 1 8.5752 -1.5602 -2.8682 42 1 9.4057 -5.6611 -5.0147 43 1 4.1161 -2.1384 -0.0097 44 1 1.6550 -2.1327 -0.0008 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885517392.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:18:58 Heat of formation + Delta-G solvation = -45.919132 kcal Electronic energy + Delta-G solvation = -26146.579154 eV Core-core repulsion = 22576.820477 eV Total energy + Delta-G solvation = -3569.758677 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.39501 -39.26630 -38.23999 -37.15593 -35.95416 -35.37085 -33.52920 -32.24732 -31.93554 -27.98841 -27.56406 -26.54003 -25.32137 -23.63884 -23.24931 -22.29003 -21.06683 -20.02403 -19.53294 -18.77415 -17.52908 -17.26487 -16.71691 -16.56760 -16.42639 -16.28368 -15.91101 -15.41703 -15.35084 -14.84742 -14.50092 -14.42606 -14.38492 -13.91546 -13.84696 -13.41781 -13.33219 -13.25924 -13.21041 -13.11821 -13.02810 -12.97984 -12.81150 -12.36978 -12.26771 -12.15957 -12.00591 -11.75778 -11.62240 -11.48838 -11.29642 -11.12519 -10.86588 -10.19648 -9.85830 -9.37637 -8.38769 -6.44645 -0.92464 0.29794 0.46374 1.29642 1.31626 1.41618 1.48963 2.27328 2.65945 2.70809 2.94821 3.06178 3.54888 3.72124 3.77951 3.93185 3.96844 4.00549 4.03971 4.04641 4.08575 4.14581 4.48681 4.50330 4.52390 4.58712 4.84145 4.86429 4.88031 4.91378 4.97626 5.00170 5.03763 5.09033 5.11988 5.14104 5.16035 5.25926 5.39136 5.43116 5.54257 5.59931 5.68629 5.75614 6.14143 6.16367 6.60664 7.19699 8.76709 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.015114 B = 0.004153 C = 0.003814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1852.144780 B = 6740.767099 C = 7339.402592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.085 4.085 3 C -0.116 4.116 4 C -0.115 4.115 5 C 0.130 3.870 6 N -0.932 5.932 7 C 0.099 3.901 8 C -0.138 4.138 9 C -0.136 4.136 10 C -0.154 4.154 11 S 2.604 3.396 12 O -0.979 6.979 13 O -0.981 6.981 14 C -0.583 4.583 15 C -0.014 4.014 16 C -0.527 4.527 17 H 0.051 0.949 18 C 0.017 3.983 19 N -0.937 5.937 20 Si 0.921 3.079 21 H -0.259 1.259 22 H -0.271 1.271 23 H -0.253 1.253 24 C -0.130 4.130 25 C -0.116 4.116 26 H 0.075 0.925 27 H 0.078 0.922 28 H 0.080 0.920 29 H 0.148 0.852 30 H 0.124 0.876 31 H 0.109 0.891 32 H 0.110 0.890 33 H 0.071 0.929 34 H 0.078 0.922 35 H 0.080 0.920 36 H 0.068 0.932 37 H 0.109 0.891 38 H 0.142 0.858 39 H 0.137 0.863 40 H 0.029 0.971 41 H 0.031 0.969 42 H 0.271 0.729 43 H 0.129 0.871 44 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.337 13.133 15.807 25.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.085 4.085 3 C -0.134 4.134 4 C -0.135 4.135 5 C 0.038 3.962 6 N -0.762 5.762 7 C -0.005 4.005 8 C -0.177 4.177 9 C -0.174 4.174 10 C -0.193 4.193 11 S 2.704 3.296 12 O -0.969 6.969 13 O -0.971 6.971 14 C -0.715 4.715 15 C -0.053 4.053 16 C -0.565 4.565 17 H 0.069 0.931 18 C -0.182 4.182 19 N -0.577 5.577 20 Si 0.744 3.256 21 H -0.183 1.183 22 H -0.196 1.196 23 H -0.177 1.177 24 C -0.151 4.151 25 C -0.135 4.135 26 H 0.094 0.906 27 H 0.097 0.903 28 H 0.099 0.901 29 H 0.166 0.834 30 H 0.142 0.858 31 H 0.127 0.873 32 H 0.128 0.872 33 H 0.090 0.910 34 H 0.097 0.903 35 H 0.098 0.902 36 H 0.087 0.913 37 H 0.128 0.872 38 H 0.160 0.840 39 H 0.155 0.845 40 H 0.048 0.952 41 H 0.049 0.951 42 H 0.080 0.920 43 H 0.147 0.853 44 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -14.985 13.765 15.119 25.350 hybrid contribution 0.757 -0.711 -0.682 1.242 sum -14.228 13.054 14.437 24.110 Atomic orbital electron populations 1.20854 0.88894 1.04046 1.03111 1.20346 0.97793 0.92640 0.97726 1.21218 0.92898 0.99065 1.00268 1.21501 0.95273 0.97253 0.99519 1.17256 0.81288 0.93932 1.03756 1.54924 1.11749 1.88241 1.21325 1.22234 0.96094 0.99776 0.82441 1.23302 0.99832 0.97147 0.97392 1.22939 0.97686 0.95467 1.01267 1.23444 1.00015 0.97109 0.98700 1.05190 0.73145 0.78376 0.72857 1.93519 1.62436 1.81746 1.59242 1.93505 1.49232 1.69605 1.84766 1.30317 1.10924 1.22684 1.07593 1.19360 0.95688 0.98244 0.92057 1.21115 1.36299 0.91698 1.07438 0.93076 1.25824 0.95390 0.96757 1.00214 1.70000 1.41449 1.15121 1.31106 0.86078 0.80301 0.80037 0.79182 1.18322 1.19625 1.17661 1.21631 0.95617 0.97401 1.00418 1.21212 0.92982 0.99098 1.00205 0.90594 0.90331 0.90136 0.83422 0.85764 0.87267 0.87164 0.91042 0.90312 0.90173 0.91326 0.87249 0.83965 0.84492 0.95239 0.95089 0.92030 0.85271 0.83664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.30 10.01 71.23 0.71 -0.59 16 2 C -0.08 -1.52 5.88 -19.84 -0.12 -1.64 16 3 C -0.12 -2.23 9.69 22.25 0.22 -2.02 16 4 C -0.11 -2.74 8.45 22.40 0.19 -2.55 16 5 C 0.13 3.40 2.05 38.21 0.08 3.48 16 6 N -0.93 -25.96 2.94 -316.49 -0.93 -26.90 16 7 C 0.10 2.28 4.49 45.52 0.20 2.49 16 8 C -0.14 -2.49 7.40 31.18 0.23 -2.26 16 9 C -0.14 -2.35 7.53 31.18 0.23 -2.11 16 10 C -0.15 -2.90 7.77 31.12 0.24 -2.66 16 11 S 2.60 93.90 5.39 -56.49 -0.30 93.60 16 12 O -0.98 -40.58 17.14 -127.65 -2.19 -42.76 16 13 O -0.98 -39.14 16.78 -127.65 -2.14 -41.29 16 14 C -0.58 -22.07 6.12 71.98 0.44 -21.63 16 15 C -0.01 -0.69 4.05 29.85 0.12 -0.57 16 16 C -0.53 -30.05 9.66 25.60 0.25 -29.80 16 17 H 0.05 3.10 7.99 -2.91 -0.02 3.08 16 18 C 0.02 0.99 5.47 84.65 0.46 1.46 16 19 N -0.94 -57.67 13.96 21.45 0.30 -57.37 16 20 Si 0.92 44.20 27.47 68.60 1.88 46.09 16 21 H -0.26 -11.84 7.11 99.48 0.71 -11.14 16 22 H -0.27 -12.49 7.11 99.48 0.71 -11.79 16 23 H -0.25 -11.66 6.54 99.48 0.65 -11.01 16 24 C -0.13 -3.12 8.77 22.40 0.20 -2.92 16 25 C -0.12 -2.32 9.69 22.25 0.22 -2.11 16 26 H 0.08 0.85 8.14 -2.38 -0.02 0.83 16 27 H 0.08 0.74 8.08 -2.39 -0.02 0.72 16 28 H 0.08 0.71 8.08 -2.39 -0.02 0.69 16 29 H 0.15 2.04 8.06 -2.91 -0.02 2.02 16 30 H 0.12 2.84 7.62 -2.91 -0.02 2.82 16 31 H 0.11 2.62 7.14 -2.39 -0.02 2.60 16 32 H 0.11 1.54 8.14 -2.38 -0.02 1.53 16 33 H 0.07 1.36 6.07 -2.39 -0.01 1.34 16 34 H 0.08 1.53 5.41 -2.38 -0.01 1.51 16 35 H 0.08 1.13 8.14 -2.38 -0.02 1.11 16 36 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 37 H 0.11 1.67 8.14 -2.39 -0.02 1.65 16 38 H 0.14 4.83 8.14 -2.39 -0.02 4.82 16 39 H 0.14 4.79 8.14 -2.39 -0.02 4.77 16 40 H 0.03 1.42 7.20 -2.39 -0.02 1.41 16 41 H 0.03 1.46 7.57 -2.39 -0.02 1.44 16 42 H 0.27 15.48 8.31 -92.71 -0.77 14.71 16 43 H 0.13 2.95 8.06 -2.91 -0.02 2.92 16 44 H 0.15 2.24 8.06 -2.91 -0.02 2.22 16 Total: -1.00 -73.65 366.12 1.22 -72.44 By element: Atomic # 1 Polarization: 18.70 SS G_CDS: 0.92 Total: 19.62 kcal Atomic # 6 Polarization: -67.11 SS G_CDS: 3.67 Total: -63.43 kcal Atomic # 7 Polarization: -83.63 SS G_CDS: -0.63 Total: -84.26 kcal Atomic # 8 Polarization: -79.72 SS G_CDS: -4.33 Total: -84.05 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 1.88 Total: 46.09 kcal Atomic # 16 Polarization: 93.90 SS G_CDS: -0.30 Total: 93.60 kcal Total: -73.65 1.22 -72.44 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885517392.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.518 kcal (2) G-P(sol) polarization free energy of solvation -73.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds