Wall clock time and date at job start Tue Mar 31 2020 13:34:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86800 * 120.00012 * 2 1 4 4 H 1.48503 * 109.46845 * 0.02562 * 3 2 1 5 5 H 1.48503 * 109.47399 * 119.99895 * 3 2 1 6 6 H 1.48498 * 109.47295 * 240.00502 * 3 2 1 7 7 C 1.38803 * 120.00229 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99611 * 180.02562 * 7 2 1 9 9 S 1.76199 * 119.99949 * 359.97438 * 7 2 1 10 10 C 1.81000 * 99.99871 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.46774 * 179.97438 * 10 9 7 12 12 C 1.53006 * 109.46976 * 179.97438 * 11 10 9 13 13 N 1.46898 * 109.47048 * 180.02562 * 12 11 10 14 14 C 1.48530 * 110.99929 * 54.60120 * 13 12 11 15 15 C 1.54317 * 104.66923 * 159.19236 * 14 13 12 16 16 H 1.09007 * 112.55272 * 214.16054 * 15 14 13 17 17 C 1.54161 * 108.86609 * 89.63857 * 15 14 13 18 18 C 1.54843 * 104.32406 * 271.12023 * 17 15 14 19 19 C 1.54838 * 102.73300 * 321.81124 * 18 17 15 20 20 C 1.54170 * 104.32322 * 38.18634 * 19 18 17 21 21 C 1.53001 * 112.51262 * 213.41335 * 20 19 18 22 22 F 1.39901 * 109.47090 * 298.12589 * 21 20 19 23 23 F 1.39903 * 109.47135 * 58.12161 * 21 20 19 24 24 F 1.39893 * 109.47178 * 178.12544 * 21 20 19 25 25 C 1.48531 * 110.99785 * 170.00417 * 13 12 11 26 26 H 0.97000 * 120.00071 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47385 * 299.99958 * 10 9 7 28 28 H 1.09005 * 109.47046 * 60.00120 * 10 9 7 29 29 H 1.08996 * 109.47558 * 299.99798 * 11 10 9 30 30 H 1.09001 * 109.47131 * 60.00875 * 11 10 9 31 31 H 1.09004 * 109.47273 * 300.00925 * 12 11 10 32 32 H 1.09005 * 109.46779 * 60.00488 * 12 11 10 33 33 H 1.09000 * 110.39215 * 277.98921 * 14 13 12 34 34 H 1.08995 * 110.40010 * 40.39133 * 14 13 12 35 35 H 1.09003 * 110.46631 * 29.83149 * 17 15 14 36 36 H 1.09002 * 110.46220 * 152.27768 * 17 15 14 37 37 H 1.08995 * 110.75886 * 80.12744 * 18 17 15 38 38 H 1.09004 * 110.75511 * 203.32043 * 18 17 15 39 39 H 1.09002 * 110.46572 * 279.47426 * 19 18 17 40 40 H 1.09004 * 110.46490 * 156.89146 * 19 18 17 41 41 H 1.09004 * 110.39946 * 319.60595 * 25 13 12 42 42 H 1.09002 * 110.39671 * 81.89126 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 1.2852 2.7464 0.0006 5 1 3.1040 1.6965 1.2125 6 1 3.1039 1.6965 -1.2125 7 6 2.0103 -1.2020 -0.0005 8 1 3.0904 -1.2019 -0.0001 9 16 1.1294 -2.7280 -0.0005 10 6 2.5160 -3.8914 -0.0005 11 6 1.9794 -5.3242 0.0001 12 6 3.1515 -6.3077 -0.0005 13 7 2.6364 -7.6834 -0.0005 14 6 1.6971 -7.9000 -1.1305 15 6 1.6692 -9.4303 -1.3277 16 1 1.5509 -9.7150 -2.3732 17 6 0.5567 -10.0267 -0.4427 18 6 1.2543 -10.3107 0.9102 19 6 2.6531 -10.8117 0.4744 20 6 3.0115 -9.9329 -0.7405 21 6 3.8440 -10.6840 -1.7816 22 9 5.0570 -11.0824 -1.2095 23 9 3.1402 -11.8125 -2.2155 24 9 4.0961 -9.8439 -2.8714 25 6 3.7286 -8.6607 -0.2418 26 1 -0.4850 -0.8400 -0.0004 27 1 3.1246 -3.7313 -0.8905 28 1 3.1246 -3.7313 0.8895 29 1 1.3711 -5.4840 0.8903 30 1 1.3707 -5.4846 -0.8897 31 1 3.7597 -6.1477 -0.8909 32 1 3.7607 -6.1474 0.8891 33 1 0.7036 -7.5318 -0.8745 34 1 2.0653 -7.4076 -2.0305 35 1 -0.2520 -9.3079 -0.3110 36 1 0.1768 -10.9505 -0.8791 37 1 1.3373 -9.3985 1.5010 38 1 0.7204 -11.0818 1.4657 39 1 2.6088 -11.8617 0.1854 40 1 3.3768 -10.6665 1.2765 41 1 4.4119 -8.2862 -1.0041 42 1 4.2676 -8.8642 0.6835 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000886614522.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:34:13 Heat of formation + Delta-G solvation = -192.252478 kcal Electronic energy + Delta-G solvation = -25939.631213 eV Core-core repulsion = 21821.670306 eV Total energy + Delta-G solvation = -4117.960907 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.123 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -51.20646 -48.70216 -48.66462 -41.43101 -37.30417 -34.79173 -34.03801 -32.27446 -30.76239 -27.78281 -26.96296 -26.70531 -25.26802 -23.47832 -21.92030 -21.51923 -20.80833 -20.23905 -19.35201 -19.24693 -18.55493 -17.23253 -16.92195 -16.10346 -15.98127 -15.72231 -15.68798 -15.54382 -15.30386 -15.22226 -15.11529 -14.90614 -14.84012 -14.71404 -14.69703 -14.40181 -14.11503 -13.64702 -13.23858 -13.18425 -12.78328 -12.63314 -12.51215 -12.31090 -12.10409 -11.99542 -11.96094 -11.88390 -11.72387 -11.70359 -11.37313 -11.19380 -11.10705 -10.41928 -9.59141 -8.94542 -8.86886 -6.28618 1.40560 1.56281 1.57212 1.63339 1.78825 2.32274 2.57571 2.70799 2.80687 2.99533 3.02519 3.13634 3.44209 3.47498 3.56743 3.88790 3.98908 4.06721 4.13723 4.18872 4.26551 4.32868 4.35630 4.45129 4.52609 4.57430 4.66912 4.71352 4.72783 4.85504 4.88778 4.96439 5.03849 5.08676 5.17721 5.22913 5.24675 5.52964 5.61830 5.67691 5.85980 6.15817 7.03690 8.50221 Molecular weight = 323.12amu Principal moments of inertia in cm(-1) A = 0.027110 B = 0.002448 C = 0.002359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1032.591940 B =11433.456870 C =11865.386276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C -0.018 4.018 3 Si 1.132 2.868 4 H -0.276 1.276 5 H -0.265 1.265 6 H -0.266 1.266 7 C -0.607 4.607 8 H 0.064 0.936 9 S -0.240 6.240 10 C -0.068 4.068 11 C -0.083 4.083 12 C 0.058 3.942 13 N -0.496 5.496 14 C 0.034 3.966 15 C -0.083 4.083 16 H 0.091 0.909 17 C -0.111 4.111 18 C -0.111 4.111 19 C -0.100 4.100 20 C -0.113 4.113 21 C 0.465 3.535 22 F -0.183 7.183 23 F -0.181 7.181 24 F -0.190 7.190 25 C 0.046 3.954 26 H 0.263 0.737 27 H 0.061 0.939 28 H 0.066 0.934 29 H 0.071 0.929 30 H 0.064 0.936 31 H 0.038 0.962 32 H 0.087 0.913 33 H 0.091 0.909 34 H 0.041 0.959 35 H 0.075 0.925 36 H 0.077 0.923 37 H 0.075 0.925 38 H 0.082 0.918 39 H 0.078 0.922 40 H 0.088 0.912 41 H 0.047 0.953 42 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.174 -26.321 -0.861 27.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.221 4.221 3 Si 0.951 3.049 4 H -0.201 1.201 5 H -0.190 1.190 6 H -0.191 1.191 7 C -0.755 4.755 8 H 0.083 0.917 9 S -0.012 6.012 10 C -0.218 4.218 11 C -0.122 4.122 12 C -0.071 4.071 13 N -0.219 5.219 14 C -0.094 4.094 15 C -0.102 4.102 16 H 0.109 0.891 17 C -0.148 4.148 18 C -0.149 4.149 19 C -0.137 4.137 20 C -0.115 4.115 21 C 0.411 3.589 22 F -0.164 7.164 23 F -0.162 7.162 24 F -0.172 7.172 25 C -0.083 4.083 26 H 0.074 0.926 27 H 0.079 0.921 28 H 0.085 0.915 29 H 0.090 0.910 30 H 0.083 0.917 31 H 0.057 0.943 32 H 0.106 0.894 33 H 0.109 0.891 34 H 0.059 0.941 35 H 0.093 0.907 36 H 0.095 0.905 37 H 0.094 0.906 38 H 0.100 0.900 39 H 0.097 0.903 40 H 0.107 0.893 41 H 0.066 0.934 42 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 5.606 -24.972 -0.358 25.596 hybrid contribution 2.067 -1.101 -1.270 2.664 sum 7.673 -26.072 -1.628 27.227 Atomic orbital electron populations 1.70916 1.07766 1.30206 1.45802 1.27758 0.96421 1.06187 0.91742 0.82756 0.74035 0.69868 0.78290 1.20127 1.19026 1.19124 1.23911 0.95881 0.92834 1.62831 0.91734 1.84178 1.16512 1.03070 1.97458 1.23035 0.98829 0.96821 1.03119 1.21203 0.97967 0.90054 1.02960 1.22217 0.95959 0.87227 1.01747 1.65479 1.12230 1.03065 1.41158 1.23295 0.98712 0.94881 0.92530 1.22531 0.92724 0.94664 1.00313 0.89088 1.22379 0.96396 1.01042 0.94992 1.22381 0.93726 1.01834 0.96943 1.22385 0.99237 0.97991 0.94094 1.23178 0.96013 0.97194 0.95142 1.20397 0.78821 0.77808 0.81862 1.93179 1.47398 1.91400 1.84460 1.93170 1.78575 1.53708 1.90757 1.93170 1.94624 1.71496 1.57862 1.23226 0.93341 0.89928 1.01758 0.92562 0.92051 0.91542 0.91020 0.91718 0.94335 0.89431 0.89063 0.94073 0.90674 0.90477 0.90625 0.89958 0.90295 0.89302 0.93437 0.87331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -57.02 13.67 21.65 0.30 -56.72 16 2 C -0.02 -1.02 5.49 84.86 0.47 -0.55 16 3 Si 1.13 49.66 29.92 68.60 2.05 51.72 16 4 H -0.28 -11.97 7.11 99.48 0.71 -11.26 16 5 H -0.27 -10.72 7.11 99.48 0.71 -10.01 16 6 H -0.27 -10.79 7.11 99.48 0.71 -10.08 16 7 C -0.61 -35.42 9.50 67.96 0.65 -34.77 16 8 H 0.06 3.65 7.80 -2.91 -0.02 3.63 16 9 S -0.24 -12.58 20.46 -56.49 -1.16 -13.74 16 10 C -0.07 -2.68 5.67 71.98 0.41 -2.27 16 11 C -0.08 -2.50 4.93 30.60 0.15 -2.35 16 12 C 0.06 1.37 5.06 86.31 0.44 1.81 16 13 N -0.50 -10.00 4.71 -881.89 -4.15 -14.15 16 14 C 0.03 0.66 4.54 86.43 0.39 1.06 16 15 C -0.08 -1.35 3.29 -9.31 -0.03 -1.38 16 16 H 0.09 1.47 7.75 -2.38 -0.02 1.45 16 17 C -0.11 -1.52 6.27 31.62 0.20 -1.32 16 18 C -0.11 -1.45 6.52 31.85 0.21 -1.24 16 19 C -0.10 -1.27 5.68 31.62 0.18 -1.09 16 20 C -0.11 -1.79 0.49 -50.69 -0.02 -1.81 16 21 C 0.47 8.29 2.21 71.98 0.16 8.45 16 22 F -0.18 -3.35 17.01 44.97 0.76 -2.59 16 23 F -0.18 -3.26 16.52 44.97 0.74 -2.52 16 24 F -0.19 -3.93 16.39 44.97 0.74 -3.19 16 25 C 0.05 0.79 5.27 86.43 0.46 1.24 16 26 H 0.26 16.85 7.13 -92.71 -0.66 16.19 16 27 H 0.06 2.40 8.14 -2.40 -0.02 2.38 16 28 H 0.07 2.57 8.14 -2.39 -0.02 2.55 16 29 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 30 H 0.06 1.98 6.83 -2.39 -0.02 1.96 16 31 H 0.04 0.91 7.88 -2.39 -0.02 0.89 16 32 H 0.09 1.96 8.14 -2.38 -0.02 1.94 16 33 H 0.09 1.88 6.95 -2.39 -0.02 1.86 16 34 H 0.04 0.89 8.00 -2.39 -0.02 0.87 16 35 H 0.07 1.08 7.45 -2.39 -0.02 1.07 16 36 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 37 H 0.08 1.21 7.71 -2.39 -0.02 1.19 16 38 H 0.08 0.86 8.14 -2.38 -0.02 0.84 16 39 H 0.08 0.93 7.51 -2.39 -0.02 0.91 16 40 H 0.09 1.02 7.45 -2.38 -0.02 1.00 16 41 H 0.05 0.89 7.15 -2.39 -0.02 0.87 16 42 H 0.11 1.62 7.45 -2.39 -0.02 1.60 16 Total: -1.00 -66.53 350.82 4.05 -62.48 By element: Atomic # 1 Polarization: 11.84 SS G_CDS: 1.12 Total: 12.96 kcal Atomic # 6 Polarization: -37.88 SS G_CDS: 3.64 Total: -34.24 kcal Atomic # 7 Polarization: -67.02 SS G_CDS: -3.86 Total: -70.88 kcal Atomic # 9 Polarization: -10.55 SS G_CDS: 2.24 Total: -8.30 kcal Atomic # 14 Polarization: 49.66 SS G_CDS: 2.05 Total: 51.72 kcal Atomic # 16 Polarization: -12.58 SS G_CDS: -1.16 Total: -13.74 kcal Total: -66.53 4.05 -62.48 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886614522.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -129.777 kcal (2) G-P(sol) polarization free energy of solvation -66.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -196.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -192.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds