Wall clock time and date at job start Tue Mar 31 2020 13:42:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30644 * 1 3 3 Si 1.86795 * 119.99739 * 2 1 4 4 H 1.48501 * 109.47194 * 239.99970 * 3 2 1 5 5 H 1.48503 * 109.47372 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47248 * 120.00226 * 3 2 1 7 7 C 1.40297 * 119.99797 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99641 * 170.14816 * 7 2 1 9 9 C 1.40537 * 120.00566 * 350.14559 * 7 2 1 10 10 C 1.44187 * 123.71182 * 336.50466 * 9 7 2 11 11 C 1.32767 * 114.42617 * 179.97438 * 10 9 7 12 12 S 1.75462 * 111.36678 * 359.77874 * 11 10 9 13 13 C 1.39544 * 123.71427 * 156.48494 * 9 7 2 14 14 C 1.46232 * 125.23372 * 359.97438 * 13 9 7 15 15 O 1.21763 * 119.99620 * 0.02562 * 14 13 9 16 16 N 1.34776 * 120.00237 * 180.02562 * 14 13 9 17 17 C 1.46502 * 120.00167 * 180.02562 * 16 14 13 18 18 C 1.52990 * 109.47474 * 179.97438 * 17 16 14 19 19 C 1.53006 * 109.47394 * 179.97438 * 18 17 16 20 20 H 1.08997 * 109.46796 * 304.99673 * 19 18 17 21 21 C 1.53001 * 109.46942 * 65.00168 * 19 18 17 22 22 C 1.52998 * 109.46699 * 180.02562 * 21 19 18 23 23 C 1.53008 * 109.47006 * 299.99466 * 22 21 19 24 24 C 1.53000 * 109.46587 * 60.00629 * 23 22 21 25 25 C 1.53000 * 109.47288 * 299.99478 * 24 23 22 26 26 H 1.08995 * 109.47222 * 180.02562 * 25 24 23 27 27 O 1.42897 * 109.47228 * 300.00752 * 25 24 23 28 28 H 0.97001 * 120.00434 * 359.97438 * 1 2 3 29 29 H 1.07994 * 122.78401 * 359.96383 * 10 9 7 30 30 H 1.08006 * 124.31484 * 180.02562 * 11 10 9 31 31 H 0.97003 * 120.00237 * 0.02562 * 16 14 13 32 32 H 1.09001 * 109.47143 * 59.99694 * 17 16 14 33 33 H 1.09004 * 109.46989 * 300.00481 * 17 16 14 34 34 H 1.08999 * 109.47063 * 60.00283 * 18 17 16 35 35 H 1.09004 * 109.47444 * 300.00250 * 18 17 16 36 36 H 1.09004 * 109.46901 * 300.00165 * 21 19 18 37 37 H 1.09000 * 109.47089 * 59.99882 * 21 19 18 38 38 H 1.08992 * 109.47467 * 59.99807 * 22 21 19 39 39 H 1.09005 * 109.46841 * 180.02562 * 22 21 19 40 40 H 1.08998 * 109.46595 * 180.02562 * 23 22 21 41 41 H 1.09000 * 109.47234 * 300.00765 * 23 22 21 42 42 H 1.09004 * 109.46533 * 179.97438 * 24 23 22 43 43 H 1.09000 * 109.47222 * 60.00129 * 24 23 22 44 44 H 0.96704 * 114.00229 * 299.99701 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2403 1.6177 0.0000 4 1 3.0941 1.6965 -1.2125 5 1 1.2753 2.7465 0.0006 6 1 3.0941 1.6964 1.2124 7 6 2.0079 -1.2150 -0.0005 8 1 3.0760 -1.2218 -0.1606 9 6 1.3208 -2.4233 0.2072 10 6 0.0549 -2.5167 0.8910 11 6 -0.4297 -3.7493 0.9832 12 16 0.6387 -4.9148 0.2226 13 6 1.7885 -3.6646 -0.2259 14 6 3.0401 -3.8895 -0.9479 15 8 3.7662 -2.9492 -1.2151 16 7 3.3900 -5.1374 -1.3177 17 6 4.6442 -5.3627 -2.0405 18 6 4.8006 -6.8554 -2.3376 19 6 6.1102 -7.0906 -3.0931 20 1 6.1321 -6.4652 -3.9855 21 6 7.2917 -6.7318 -2.1896 22 6 8.6011 -6.9664 -2.9453 23 6 8.6986 -8.4383 -3.3519 24 6 7.5171 -8.7970 -4.2554 25 6 6.2076 -8.5624 -3.4997 26 1 5.3659 -8.8183 -4.1432 27 8 6.1791 -9.3826 -2.3300 28 1 -0.4851 0.8400 0.0004 29 1 -0.4566 -1.6554 1.2948 30 1 -1.3645 -4.0018 1.4617 31 1 2.8114 -5.8864 -1.1052 32 1 5.4814 -5.0245 -1.4298 33 1 4.6291 -4.8051 -2.9770 34 1 3.9636 -7.1939 -2.9482 35 1 4.8159 -7.4127 -1.4009 36 1 7.2224 -5.6832 -1.9002 37 1 7.2696 -7.3572 -1.2971 38 1 8.6229 -6.3408 -3.8375 39 1 9.4429 -6.7113 -2.3015 40 1 9.6317 -8.6055 -3.8899 41 1 8.6768 -9.0640 -2.4596 42 1 7.5868 -9.8454 -4.5454 43 1 7.5389 -8.1713 -5.1477 44 1 6.2371 -10.3304 -2.5126 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000887556609.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:42:14 Heat of formation + Delta-G solvation = -99.527245 kcal Electronic energy + Delta-G solvation = -24686.544675 eV Core-core repulsion = 21114.461377 eV Total energy + Delta-G solvation = -3572.083299 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.66395 -38.19644 -36.09977 -35.35505 -34.46957 -33.02427 -32.14781 -30.07382 -29.07205 -27.88146 -25.89708 -23.62793 -22.62236 -21.88013 -20.86866 -20.03167 -19.70254 -18.71789 -17.42532 -17.02262 -15.99774 -15.61935 -15.46192 -15.11045 -14.92520 -14.44759 -14.28424 -14.07537 -13.61522 -13.56842 -13.07691 -12.80480 -12.60121 -12.42253 -12.26115 -11.96422 -11.87101 -11.64084 -11.45322 -11.38545 -11.29944 -11.08640 -10.99154 -10.88570 -10.60005 -10.56975 -10.42762 -10.10907 -9.99727 -9.84165 -9.59734 -9.21725 -8.38375 -8.13853 -7.45108 -7.10706 -7.01176 -4.49183 2.20016 3.00373 3.02368 3.06221 3.16395 3.67245 3.83897 3.88402 4.08009 4.14689 4.49588 4.51807 4.58446 4.69203 4.96937 4.98264 5.20611 5.25417 5.30104 5.31937 5.39866 5.48069 5.56881 5.63558 5.74683 5.82081 5.89574 6.01366 6.04904 6.07386 6.08989 6.17359 6.32091 6.40675 6.50761 6.74669 6.87777 7.20075 7.23832 7.40426 7.49662 7.52383 7.74706 8.39619 8.51070 8.64530 8.83810 9.65896 9.90040 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.017514 B = 0.002832 C = 0.002491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1598.344136 B = 9883.131804 C =11238.026266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.780 5.780 2 C 0.067 3.933 3 Si 0.926 3.074 4 H -0.258 1.258 5 H -0.277 1.277 6 H -0.259 1.259 7 C -0.378 4.378 8 H 0.111 0.889 9 C 0.140 3.860 10 C -0.099 4.099 11 C -0.207 4.207 12 S -0.052 6.052 13 C -0.429 4.429 14 C 0.600 3.400 15 O -0.566 6.566 16 N -0.751 5.751 17 C 0.128 3.872 18 C -0.121 4.121 19 C -0.074 4.074 20 H 0.081 0.919 21 C -0.115 4.115 22 C -0.120 4.120 23 C -0.114 4.114 24 C -0.152 4.152 25 C 0.110 3.890 26 H 0.053 0.947 27 O -0.558 6.558 28 H 0.288 0.712 29 H 0.145 0.855 30 H 0.137 0.863 31 H 0.389 0.611 32 H 0.059 0.941 33 H 0.054 0.946 34 H 0.063 0.937 35 H 0.075 0.925 36 H 0.067 0.933 37 H 0.071 0.929 38 H 0.059 0.941 39 H 0.061 0.939 40 H 0.056 0.944 41 H 0.067 0.933 42 H 0.061 0.939 43 H 0.070 0.930 44 H 0.372 0.628 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.420 -13.449 -5.478 17.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.404 5.404 2 C -0.154 4.154 3 Si 0.749 3.251 4 H -0.183 1.183 5 H -0.202 1.202 6 H -0.184 1.184 7 C -0.409 4.409 8 H 0.129 0.871 9 C 0.129 3.871 10 C -0.131 4.131 11 C -0.341 4.341 12 S 0.203 5.797 13 C -0.548 4.548 14 C 0.396 3.604 15 O -0.449 6.449 16 N -0.404 5.404 17 C 0.003 3.997 18 C -0.159 4.159 19 C -0.092 4.092 20 H 0.100 0.900 21 C -0.153 4.153 22 C -0.157 4.157 23 C -0.152 4.152 24 C -0.190 4.190 25 C 0.052 3.948 26 H 0.071 0.929 27 O -0.363 6.363 28 H 0.099 0.901 29 H 0.163 0.837 30 H 0.155 0.845 31 H 0.222 0.778 32 H 0.077 0.923 33 H 0.073 0.927 34 H 0.082 0.918 35 H 0.094 0.906 36 H 0.086 0.914 37 H 0.090 0.910 38 H 0.078 0.922 39 H 0.079 0.921 40 H 0.074 0.926 41 H 0.086 0.914 42 H 0.080 0.920 43 H 0.089 0.911 44 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges 9.633 -13.570 -5.585 17.554 hybrid contribution -0.140 1.195 -0.125 1.209 sum 9.493 -12.376 -5.711 16.610 Atomic orbital electron populations 1.69668 1.08063 1.30401 1.32310 1.26373 0.94939 1.02553 0.91549 0.86048 0.79935 0.78360 0.80740 1.18256 1.20159 1.18366 1.19996 0.97754 0.88800 1.34373 0.87133 1.17928 0.89511 0.91814 0.87827 1.21732 0.96399 0.96043 0.98975 1.24944 1.03400 0.96998 1.08719 1.82698 1.18154 1.14214 1.64604 1.22613 1.05208 0.95581 1.31411 1.16848 0.84535 0.81278 0.77716 1.90645 1.54017 1.41678 1.58574 1.45835 1.23339 1.09322 1.61935 1.21139 0.87473 0.94601 0.96459 1.21745 0.96687 0.96078 1.01392 1.21104 0.95331 0.93571 0.99243 0.90034 1.21594 0.93032 1.01896 0.98755 1.21541 0.97912 0.96097 1.00177 1.21437 0.97014 0.97103 0.99641 1.22251 0.96194 1.01387 0.99148 1.21795 0.95365 0.91404 0.86283 0.92913 1.86564 1.96888 1.20370 1.32450 0.90091 0.83730 0.84515 0.77778 0.92285 0.92743 0.91824 0.90641 0.91392 0.91013 0.92225 0.92074 0.92551 0.91425 0.92021 0.91137 0.78216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.13 10.81 55.57 0.60 -18.53 16 2 C 0.07 1.67 5.39 -17.28 -0.09 1.57 16 3 Si 0.93 18.83 29.57 -169.99 -5.03 13.80 16 4 H -0.26 -5.38 7.11 56.52 0.40 -4.98 16 5 H -0.28 -5.30 7.11 56.52 0.40 -4.90 16 6 H -0.26 -5.20 7.11 56.52 0.40 -4.80 16 7 C -0.38 -10.40 8.51 -37.94 -0.32 -10.72 16 8 H 0.11 3.19 6.04 -52.48 -0.32 2.87 16 9 C 0.14 3.82 5.68 -106.21 -0.60 3.22 16 10 C -0.10 -2.46 9.04 -39.12 -0.35 -2.81 16 11 C -0.21 -4.58 11.07 28.86 0.32 -4.26 16 12 S -0.05 -1.13 22.25 -107.50 -2.39 -3.52 16 13 C -0.43 -11.15 6.51 -35.89 -0.23 -11.39 16 14 C 0.60 15.19 7.76 -13.05 -0.10 15.09 16 15 O -0.57 -15.91 14.45 5.13 0.07 -15.84 16 16 N -0.75 -15.20 5.55 -61.76 -0.34 -15.54 16 17 C 0.13 2.15 5.43 -4.05 -0.02 2.13 16 18 C -0.12 -1.57 4.58 -26.73 -0.12 -1.70 16 19 C -0.07 -0.80 2.02 -90.62 -0.18 -0.98 16 20 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 21 C -0.12 -1.29 4.81 -26.73 -0.13 -1.42 16 22 C -0.12 -1.12 5.92 -26.73 -0.16 -1.28 16 23 C -0.11 -0.94 5.78 -26.73 -0.15 -1.09 16 24 C -0.15 -1.15 5.64 -26.73 -0.15 -1.30 16 25 C 0.11 0.99 3.21 -26.73 -0.09 0.91 16 26 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 27 O -0.56 -5.23 11.39 -35.23 -0.40 -5.63 16 28 H 0.29 6.34 8.29 -40.82 -0.34 6.00 16 29 H 0.15 3.54 6.40 -52.49 -0.34 3.21 16 30 H 0.14 2.56 8.06 -52.48 -0.42 2.14 16 31 H 0.39 7.25 7.55 -40.82 -0.31 6.94 16 32 H 0.06 1.04 6.57 -51.93 -0.34 0.70 16 33 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 34 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 35 H 0.07 1.04 7.84 -51.93 -0.41 0.63 16 36 H 0.07 0.83 6.57 -51.93 -0.34 0.49 16 37 H 0.07 0.88 7.68 -51.93 -0.40 0.48 16 38 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.07 0.59 7.68 -51.93 -0.40 0.19 16 42 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 43 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.37 2.02 9.08 45.56 0.41 2.43 16 LS Contribution 361.74 15.07 5.45 5.45 Total: -1.00 -30.54 361.74 -10.23 -40.77 By element: Atomic # 1 Polarization: 18.84 SS G_CDS: -5.80 Total: 13.05 kcal Atomic # 6 Polarization: -11.62 SS G_CDS: -2.39 Total: -14.01 kcal Atomic # 7 Polarization: -34.33 SS G_CDS: 0.26 Total: -34.07 kcal Atomic # 8 Polarization: -21.14 SS G_CDS: -0.33 Total: -21.46 kcal Atomic # 14 Polarization: 18.83 SS G_CDS: -5.03 Total: 13.80 kcal Atomic # 16 Polarization: -1.13 SS G_CDS: -2.39 Total: -3.52 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -30.54 -10.23 -40.77 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000887556609.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.757 kcal (2) G-P(sol) polarization free energy of solvation -30.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.771 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds