Wall clock time and date at job start Tue Mar 31 2020 13:42:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30648 * 1 3 3 Si 1.86804 * 119.99619 * 2 1 4 4 H 1.48496 * 109.47163 * 85.13505 * 3 2 1 5 5 H 1.48499 * 109.46685 * 205.13202 * 3 2 1 6 6 H 1.48499 * 109.47327 * 325.13044 * 3 2 1 7 7 C 1.40306 * 120.00263 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99969 * 189.92788 * 7 2 1 9 9 C 1.40544 * 119.99778 * 9.93310 * 7 2 1 10 10 C 1.44182 * 123.71478 * 23.30874 * 9 7 2 11 11 C 1.32772 * 114.42738 * 179.76392 * 10 9 7 12 12 S 1.75468 * 111.36100 * 0.49277 * 11 10 9 13 13 C 1.39540 * 123.71232 * 203.60885 * 9 7 2 14 14 C 1.46243 * 125.22909 * 359.97438 * 13 9 7 15 15 O 1.21762 * 120.00234 * 0.02562 * 14 13 9 16 16 N 1.34780 * 120.00075 * 180.02562 * 14 13 9 17 17 C 1.46496 * 119.99806 * 179.97438 * 16 14 13 18 18 H 1.08998 * 109.47676 * 34.99743 * 17 16 14 19 19 C 1.53006 * 109.47378 * 275.00065 * 17 16 14 20 20 C 1.52997 * 109.46901 * 65.00048 * 19 17 16 21 21 O 1.42909 * 109.47236 * 180.02562 * 20 19 17 22 22 C 1.53001 * 109.47229 * 155.00163 * 17 16 14 23 23 C 1.54271 * 110.03107 * 57.16342 * 22 17 16 24 24 C 1.54885 * 104.19626 * 217.10884 * 23 22 17 25 25 C 1.54891 * 102.74913 * 37.94204 * 24 23 22 26 26 C 1.53878 * 110.03104 * 300.00218 * 22 17 16 27 27 H 0.96998 * 119.99715 * 0.02562 * 1 2 3 28 28 H 1.08000 * 122.78643 * 0.02562 * 10 9 7 29 29 H 1.07996 * 124.31539 * 180.23550 * 11 10 9 30 30 H 0.96995 * 119.99985 * 0.02562 * 16 14 13 31 31 H 1.09002 * 109.47333 * 185.00193 * 19 17 16 32 32 H 1.09004 * 109.46781 * 305.00747 * 19 17 16 33 33 H 1.09002 * 109.47245 * 300.00199 * 20 19 17 34 34 H 1.08994 * 109.47464 * 60.00275 * 20 19 17 35 35 H 0.96694 * 114.00005 * 179.97438 * 21 20 19 36 36 H 1.09000 * 110.01866 * 178.60608 * 22 17 16 37 37 H 1.08999 * 110.48822 * 335.79282 * 23 22 17 38 38 H 1.09003 * 110.48371 * 98.42960 * 23 22 17 39 39 H 1.09007 * 110.75311 * 279.62860 * 24 23 22 40 40 H 1.08997 * 110.75781 * 156.26201 * 24 23 22 41 41 H 1.08996 * 110.48222 * 203.37807 * 25 24 23 42 42 H 1.08997 * 110.59305 * 80.79298 * 25 24 23 43 43 H 1.09004 * 110.02786 * 238.56941 * 26 22 17 44 44 H 1.08996 * 110.03027 * 359.94662 * 26 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3065 0.0000 0.0000 3 14 2.2404 1.6178 0.0000 4 1 2.3850 2.1059 1.3950 5 1 3.5856 1.4127 -0.5946 6 1 1.4931 2.6208 -0.8004 7 6 2.0081 -1.2151 0.0005 8 1 3.0759 -1.2219 0.1618 9 6 1.3212 -2.4232 -0.2089 10 6 0.0542 -2.5156 -0.8908 11 6 -0.4274 -3.7489 -0.9899 12 16 0.6420 -4.9154 -0.2318 13 6 1.7874 -3.6646 0.2256 14 6 3.0377 -3.8897 0.9500 15 8 3.7633 -2.9496 1.2189 16 7 3.3868 -5.1378 1.3200 17 6 4.6396 -5.3634 2.0451 18 1 4.8310 -4.5215 2.7105 19 6 5.7907 -5.4954 1.0458 20 6 5.9822 -4.1676 0.3102 21 8 7.0570 -4.2910 -0.6236 22 6 4.5285 -6.6486 2.8677 23 6 4.1872 -7.8379 1.9462 24 6 3.2237 -8.7084 2.7906 25 6 2.3711 -7.6509 3.5349 26 6 3.3737 -6.5298 3.8778 27 1 -0.4850 0.8401 -0.0004 28 1 -0.4585 -1.6537 -1.2917 29 1 -1.3604 -4.0014 -1.4716 30 1 2.8090 -5.8868 1.1055 31 1 6.7067 -5.7512 1.5784 32 1 5.5582 -6.2796 0.3253 33 1 5.0662 -3.9118 -0.2224 34 1 6.2147 -3.3834 1.0306 35 1 7.2349 -3.4850 -1.1272 36 1 5.4651 -6.8383 3.3919 37 1 3.6914 -7.4888 1.0405 38 1 5.0884 -8.3983 1.6971 39 1 3.7791 -9.3243 3.4980 40 1 2.5974 -9.3265 2.1474 41 1 1.9469 -8.0748 4.4450 42 1 1.5807 -7.2710 2.8876 43 1 3.7499 -6.6625 4.8922 44 1 2.8931 -5.5561 3.7825 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000889121253.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:42:17 Heat of formation + Delta-G solvation = -90.494002 kcal Electronic energy + Delta-G solvation = -26078.790992 eV Core-core repulsion = 22507.099404 eV Total energy + Delta-G solvation = -3571.691588 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -39.65628 -37.62106 -36.46838 -35.90629 -33.93138 -33.07794 -31.06725 -28.97283 -28.79306 -28.46060 -26.20334 -24.03345 -22.29455 -21.35148 -20.63112 -19.93203 -19.01053 -18.76741 -17.63737 -16.94679 -16.04083 -15.70367 -15.48145 -15.24378 -14.97663 -14.26903 -13.92344 -13.68979 -13.52106 -13.33902 -13.17989 -12.83381 -12.49347 -12.38192 -12.14164 -11.81623 -11.47668 -11.45799 -11.13843 -11.07817 -11.01196 -10.98442 -10.94316 -10.59196 -10.54437 -10.45165 -10.38616 -10.19982 -10.12364 -9.66711 -9.41929 -9.26703 -8.42805 -8.21211 -7.50703 -7.15632 -7.06799 -4.54872 2.14159 2.93227 2.97108 3.04755 3.11362 3.62200 3.78019 3.83146 4.13426 4.38002 4.45142 4.67763 4.74265 4.89777 5.22943 5.36832 5.43154 5.50843 5.53704 5.61261 5.64358 5.73632 5.84762 5.91754 5.93354 6.00519 6.02872 6.12575 6.14845 6.22149 6.30197 6.41821 6.45389 6.51151 6.53451 6.73345 6.82119 7.15425 7.18523 7.36502 7.47588 7.69077 7.99629 8.33484 8.45266 8.58714 8.77169 9.58174 9.84173 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.012363 B = 0.004773 C = 0.003971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2264.209091 B = 5864.752098 C = 7049.810566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.778 5.778 2 C 0.067 3.933 3 Si 0.924 3.076 4 H -0.266 1.266 5 H -0.255 1.255 6 H -0.274 1.274 7 C -0.376 4.376 8 H 0.111 0.889 9 C 0.141 3.859 10 C -0.100 4.100 11 C -0.206 4.206 12 S -0.052 6.052 13 C -0.429 4.429 14 C 0.601 3.399 15 O -0.564 6.564 16 N -0.741 5.741 17 C 0.160 3.840 18 H 0.084 0.916 19 C -0.125 4.125 20 C 0.078 3.922 21 O -0.589 6.589 22 C -0.096 4.096 23 C -0.123 4.123 24 C -0.124 4.124 25 C -0.125 4.125 26 C -0.121 4.121 27 H 0.288 0.712 28 H 0.145 0.855 29 H 0.136 0.864 30 H 0.390 0.610 31 H 0.065 0.935 32 H 0.066 0.934 33 H 0.062 0.938 34 H 0.049 0.951 35 H 0.375 0.625 36 H 0.080 0.920 37 H 0.070 0.930 38 H 0.065 0.935 39 H 0.063 0.937 40 H 0.064 0.936 41 H 0.060 0.940 42 H 0.069 0.931 43 H 0.059 0.941 44 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.032 -8.933 2.778 10.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.402 5.402 2 C -0.154 4.154 3 Si 0.748 3.252 4 H -0.190 1.190 5 H -0.179 1.179 6 H -0.199 1.199 7 C -0.407 4.407 8 H 0.129 0.871 9 C 0.130 3.870 10 C -0.132 4.132 11 C -0.340 4.340 12 S 0.202 5.798 13 C -0.548 4.548 14 C 0.399 3.601 15 O -0.448 6.448 16 N -0.395 5.395 17 C 0.054 3.946 18 H 0.102 0.898 19 C -0.163 4.163 20 C 0.001 3.999 21 O -0.394 6.394 22 C -0.115 4.115 23 C -0.161 4.161 24 C -0.162 4.162 25 C -0.163 4.163 26 C -0.159 4.159 27 H 0.099 0.901 28 H 0.162 0.838 29 H 0.154 0.846 30 H 0.225 0.775 31 H 0.084 0.916 32 H 0.085 0.915 33 H 0.080 0.920 34 H 0.067 0.933 35 H 0.221 0.779 36 H 0.098 0.902 37 H 0.088 0.912 38 H 0.083 0.917 39 H 0.082 0.918 40 H 0.083 0.917 41 H 0.079 0.921 42 H 0.088 0.912 43 H 0.078 0.922 44 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 4.289 -10.262 3.421 11.637 hybrid contribution -0.258 2.401 -0.487 2.463 sum 4.031 -7.862 2.934 9.310 Atomic orbital electron populations 1.69676 1.08076 1.30313 1.32173 1.26374 0.94924 1.02556 0.91580 0.86007 0.80698 0.78995 0.79528 1.19044 1.17875 1.19897 1.20011 0.97719 0.88752 1.34243 0.87107 1.17924 0.89475 0.91833 0.87812 1.21739 0.96454 0.96034 0.98997 1.24947 1.03407 0.96974 1.08666 1.82723 1.18448 1.14128 1.64459 1.22607 1.05424 0.95499 1.31301 1.16800 0.84344 0.81339 0.77655 1.90644 1.53833 1.41775 1.58507 1.45978 1.22915 1.09322 1.61324 1.20680 0.84208 0.97110 0.92627 0.89762 1.21949 0.98255 0.97632 0.98508 1.22398 0.89297 0.96886 0.91341 1.86339 1.55421 1.40814 1.56855 1.22042 0.99233 0.94284 0.95958 1.22473 0.99295 0.95831 0.98467 1.22495 0.97703 0.97403 0.98571 1.22363 0.98047 0.95788 1.00053 1.22184 0.95742 0.99932 0.98008 0.90130 0.83776 0.84579 0.77465 0.91595 0.91532 0.92019 0.93309 0.77860 0.90196 0.91150 0.91651 0.91828 0.91724 0.92077 0.91249 0.92203 0.90869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -18.52 10.81 55.57 0.60 -17.91 16 2 C 0.07 1.61 5.39 -17.28 -0.09 1.51 16 3 Si 0.92 18.19 29.57 -169.99 -5.03 13.17 16 4 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 5 H -0.26 -5.07 7.11 56.52 0.40 -4.67 16 6 H -0.27 -5.12 7.11 56.52 0.40 -4.72 16 7 C -0.38 -9.84 8.51 -37.94 -0.32 -10.17 16 8 H 0.11 3.02 6.05 -52.49 -0.32 2.70 16 9 C 0.14 3.65 5.68 -106.21 -0.60 3.05 16 10 C -0.10 -2.39 9.05 -39.12 -0.35 -2.74 16 11 C -0.21 -4.42 11.07 28.86 0.32 -4.10 16 12 S -0.05 -1.10 22.25 -107.50 -2.39 -3.49 16 13 C -0.43 -10.48 6.51 -35.88 -0.23 -10.71 16 14 C 0.60 13.80 6.33 -13.04 -0.08 13.72 16 15 O -0.56 -14.11 11.58 5.13 0.06 -14.05 16 16 N -0.74 -13.55 4.19 -55.24 -0.23 -13.78 16 17 C 0.16 2.50 1.80 -67.93 -0.12 2.38 16 18 H 0.08 1.48 7.58 -51.93 -0.39 1.08 16 19 C -0.12 -1.95 4.97 -26.73 -0.13 -2.08 16 20 C 0.08 1.40 5.65 37.16 0.21 1.61 16 21 O -0.59 -9.82 13.66 -35.23 -0.48 -10.30 16 22 C -0.10 -1.20 2.80 -89.50 -0.25 -1.45 16 23 C -0.12 -1.42 5.14 -25.07 -0.13 -1.55 16 24 C -0.12 -1.29 6.91 -24.74 -0.17 -1.46 16 25 C -0.12 -1.45 6.83 -25.07 -0.17 -1.62 16 26 C -0.12 -1.53 6.19 -25.61 -0.16 -1.68 16 27 H 0.29 6.14 8.29 -40.82 -0.34 5.80 16 28 H 0.14 3.44 6.39 -52.49 -0.34 3.10 16 29 H 0.14 2.48 8.06 -52.49 -0.42 2.06 16 30 H 0.39 6.78 5.91 -40.82 -0.24 6.53 16 31 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.07 1.04 7.44 -51.93 -0.39 0.66 16 33 H 0.06 1.30 5.64 -51.93 -0.29 1.00 16 34 H 0.05 0.91 7.84 -51.93 -0.41 0.51 16 35 H 0.38 4.82 9.12 45.56 0.42 5.23 16 36 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 37 H 0.07 0.91 6.10 -51.93 -0.32 0.60 16 38 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.06 0.60 8.14 -51.92 -0.42 0.17 16 40 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 42 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 43 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 44 H 0.07 1.11 7.38 -51.93 -0.38 0.73 16 LS Contribution 357.13 15.07 5.38 5.38 Total: -1.00 -27.98 357.13 -9.98 -37.96 By element: Atomic # 1 Polarization: 23.93 SS G_CDS: -5.60 Total: 18.33 kcal Atomic # 6 Polarization: -13.00 SS G_CDS: -2.30 Total: -15.30 kcal Atomic # 7 Polarization: -32.07 SS G_CDS: 0.37 Total: -31.70 kcal Atomic # 8 Polarization: -23.94 SS G_CDS: -0.42 Total: -24.36 kcal Atomic # 14 Polarization: 18.19 SS G_CDS: -5.03 Total: 13.17 kcal Atomic # 16 Polarization: -1.10 SS G_CDS: -2.39 Total: -3.49 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -27.98 -9.98 -37.96 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889121253.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.531 kcal (2) G-P(sol) polarization free energy of solvation -27.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds