Wall clock time and date at job start Tue Mar 31 2020 13:42:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30646 * 1 3 3 Si 1.86799 * 119.99669 * 2 1 4 4 H 1.48498 * 109.47047 * 359.97438 * 3 2 1 5 5 H 1.48499 * 109.47127 * 120.00121 * 3 2 1 6 6 H 1.48502 * 109.47008 * 239.99946 * 3 2 1 7 7 C 1.40306 * 120.00036 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99583 * 159.52828 * 7 2 1 9 9 C 1.40530 * 120.00426 * 339.53645 * 7 2 1 10 10 C 1.44196 * 123.71361 * 335.40091 * 9 7 2 11 11 C 1.32768 * 114.43095 * 179.76048 * 10 9 7 12 12 S 1.75476 * 111.35914 * 0.49773 * 11 10 9 13 13 C 1.39545 * 123.71796 * 155.69618 * 9 7 2 14 14 C 1.46240 * 125.22854 * 0.02562 * 13 9 7 15 15 O 1.21753 * 119.99982 * 359.97438 * 14 13 9 16 16 N 1.34777 * 120.00117 * 179.97438 * 14 13 9 17 17 C 1.46500 * 120.00021 * 180.02562 * 16 14 13 18 18 H 1.08995 * 109.46903 * 324.99803 * 17 16 14 19 19 C 1.52993 * 109.46879 * 85.00077 * 17 16 14 20 20 C 1.53004 * 109.47327 * 294.99794 * 19 17 16 21 21 O 1.42902 * 109.47268 * 180.02562 * 20 19 17 22 22 C 1.53000 * 109.46655 * 205.00109 * 17 16 14 23 23 C 1.54269 * 110.02530 * 177.16518 * 22 17 16 24 24 C 1.54893 * 104.19467 * 217.10320 * 23 22 17 25 25 C 1.54887 * 102.74836 * 37.94487 * 24 23 22 26 26 C 1.53867 * 110.03373 * 60.00184 * 22 17 16 27 27 H 0.97000 * 119.99361 * 174.00682 * 1 2 3 28 28 H 1.07995 * 122.78169 * 359.97438 * 10 9 7 29 29 H 1.07992 * 124.32023 * 180.20938 * 11 10 9 30 30 H 0.96999 * 119.99560 * 359.97438 * 16 14 13 31 31 H 1.08999 * 109.47389 * 55.00351 * 19 17 16 32 32 H 1.09009 * 109.46728 * 175.00248 * 19 17 16 33 33 H 1.09001 * 109.46966 * 300.00216 * 20 19 17 34 34 H 1.08997 * 109.47150 * 60.00280 * 20 19 17 35 35 H 0.96698 * 114.00060 * 179.97438 * 21 20 19 36 36 H 1.08997 * 110.01722 * 298.59998 * 22 17 16 37 37 H 1.08997 * 110.49308 * 335.78572 * 23 22 17 38 38 H 1.09009 * 110.48570 * 98.42719 * 23 22 17 39 39 H 1.08997 * 110.75438 * 279.63052 * 24 23 22 40 40 H 1.09001 * 110.91390 * 156.33548 * 24 23 22 41 41 H 1.08995 * 110.48611 * 203.38049 * 25 24 23 42 42 H 1.09000 * 110.59931 * 80.78731 * 25 24 23 43 43 H 1.09005 * 110.02892 * 238.56236 * 26 22 17 44 44 H 1.08995 * 110.03572 * 359.97438 * 26 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3065 0.0000 0.0000 3 14 2.2404 1.6178 0.0000 4 1 1.2753 2.7464 -0.0006 5 1 3.0941 1.6965 1.2125 6 1 3.0941 1.6965 -1.2125 7 6 2.0080 -1.2151 0.0005 8 1 3.0369 -1.2447 -0.3266 9 6 1.3720 -2.3936 0.4265 10 6 0.2462 -2.4147 1.3273 11 6 -0.2137 -3.6293 1.6031 12 16 0.7180 -4.8676 0.7798 13 6 1.7640 -3.6725 0.0291 14 6 2.8753 -3.9719 -0.8731 15 8 3.5408 -3.0660 -1.3408 16 7 3.1628 -5.2508 -1.1869 17 6 4.2764 -5.5507 -2.0903 18 1 4.3488 -4.7715 -2.8489 19 6 5.5799 -5.6077 -1.2914 20 6 5.8867 -4.2233 -0.7165 21 8 7.1046 -4.2764 0.0292 22 6 4.0339 -6.9010 -2.7677 23 6 5.1639 -7.1970 -3.7753 24 6 4.4465 -7.8986 -4.9553 25 6 3.1051 -7.1295 -5.0457 26 6 2.7249 -6.8580 -3.5754 27 1 -0.4849 -0.8355 -0.0877 28 1 -0.1891 -1.5169 1.7405 29 1 -1.0511 -3.8299 2.2548 30 1 2.6328 -5.9725 -0.8140 31 1 5.4759 -6.3245 -0.4769 32 1 6.3942 -5.9177 -1.9464 33 1 5.9908 -3.5066 -1.5311 34 1 5.0725 -3.9133 -0.0616 35 1 7.3617 -3.4316 0.4231 36 1 3.9846 -7.6909 -2.0183 37 1 5.6301 -6.2700 -4.1091 38 1 5.9065 -7.8603 -3.3317 39 1 4.2739 -8.9512 -4.7315 40 1 5.0171 -7.7898 -5.8777 41 1 2.3452 -7.7434 -5.5291 42 1 3.2364 -6.1915 -5.5851 43 1 2.0405 -7.6277 -3.2185 44 1 2.2621 -5.8754 -3.4844 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000889121254.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:42:20 Heat of formation + Delta-G solvation = -98.404665 kcal Electronic energy + Delta-G solvation = -25814.572027 eV Core-core repulsion = 22242.537407 eV Total energy + Delta-G solvation = -3572.034620 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -39.54185 -37.79645 -36.62690 -36.19032 -34.12989 -33.05297 -31.14810 -29.05290 -28.74346 -28.46392 -25.90798 -24.02015 -22.56710 -21.33739 -20.50785 -19.90072 -19.69897 -19.06334 -17.64912 -17.03681 -16.45480 -15.91754 -15.40055 -15.14249 -14.43211 -14.32524 -14.11091 -13.85476 -13.70420 -13.39299 -13.30210 -13.08795 -12.74640 -12.22254 -12.11593 -11.90294 -11.54319 -11.31387 -11.25791 -11.09422 -11.08365 -10.98496 -10.90067 -10.71638 -10.61231 -10.49578 -10.47638 -10.18980 -10.11048 -9.77136 -9.45881 -9.18669 -8.51595 -8.27273 -7.80113 -7.38105 -7.34641 -4.62122 1.99921 2.91180 3.02601 3.07955 3.28841 3.52112 3.64528 3.88042 4.02275 4.34274 4.40876 4.60803 4.72247 4.82924 5.06674 5.26003 5.41155 5.45481 5.46322 5.57865 5.63555 5.64690 5.72791 5.80067 5.82505 5.88859 5.95541 6.01954 6.08404 6.19756 6.25227 6.32002 6.33708 6.43536 6.48734 6.55123 6.77459 6.94559 7.16560 7.24640 7.34482 7.74035 7.90041 7.96580 8.38651 8.47555 8.71522 9.52458 9.74176 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.012153 B = 0.004269 C = 0.003838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2303.427276 B = 6557.448305 C = 7293.827965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.778 5.778 2 C 0.029 3.971 3 Si 1.073 2.927 4 H -0.272 1.272 5 H -0.271 1.271 6 H -0.270 1.270 7 C -0.425 4.425 8 H 0.109 0.891 9 C 0.113 3.887 10 C -0.143 4.143 11 C -0.186 4.186 12 S -0.036 6.036 13 C -0.437 4.437 14 C 0.602 3.398 15 O -0.563 6.563 16 N -0.745 5.745 17 C 0.162 3.838 18 H 0.085 0.915 19 C -0.126 4.126 20 C 0.078 3.922 21 O -0.588 6.588 22 C -0.096 4.096 23 C -0.116 4.116 24 C -0.124 4.124 25 C -0.124 4.124 26 C -0.121 4.121 27 H 0.300 0.700 28 H 0.130 0.870 29 H 0.140 0.860 30 H 0.388 0.612 31 H 0.063 0.937 32 H 0.069 0.931 33 H 0.049 0.951 34 H 0.061 0.939 35 H 0.376 0.624 36 H 0.073 0.927 37 H 0.070 0.930 38 H 0.065 0.935 39 H 0.064 0.936 40 H 0.063 0.937 41 H 0.061 0.939 42 H 0.064 0.936 43 H 0.061 0.939 44 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.906 -9.305 -4.079 11.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.401 5.401 2 C -0.195 4.195 3 Si 0.895 3.105 4 H -0.196 1.196 5 H -0.196 1.196 6 H -0.195 1.195 7 C -0.455 4.455 8 H 0.127 0.873 9 C 0.102 3.898 10 C -0.176 4.176 11 C -0.321 4.321 12 S 0.219 5.781 13 C -0.556 4.556 14 C 0.399 3.601 15 O -0.447 6.447 16 N -0.397 5.397 17 C 0.056 3.944 18 H 0.103 0.897 19 C -0.165 4.165 20 C 0.001 3.999 21 O -0.394 6.394 22 C -0.115 4.115 23 C -0.154 4.154 24 C -0.162 4.162 25 C -0.162 4.162 26 C -0.159 4.159 27 H 0.115 0.885 28 H 0.148 0.852 29 H 0.158 0.842 30 H 0.222 0.778 31 H 0.082 0.918 32 H 0.087 0.913 33 H 0.067 0.933 34 H 0.079 0.921 35 H 0.222 0.778 36 H 0.092 0.908 37 H 0.088 0.912 38 H 0.084 0.916 39 H 0.083 0.917 40 H 0.082 0.918 41 H 0.080 0.920 42 H 0.083 0.917 43 H 0.080 0.920 44 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 4.996 -9.211 -4.589 11.439 hybrid contribution -0.337 -0.093 0.541 0.644 sum 4.659 -9.304 -4.048 11.165 Atomic orbital electron populations 1.70442 1.08398 1.34523 1.26707 1.27529 0.95666 1.05220 0.91097 0.83517 0.75604 0.72805 0.78624 1.19645 1.19634 1.19454 1.20948 1.01984 0.91257 1.31317 0.87297 1.17894 0.89504 0.92409 0.89968 1.21594 0.98755 0.96889 1.00411 1.24945 1.04470 0.96673 1.06008 1.82786 1.30814 1.12653 1.51805 1.22462 1.14407 0.94379 1.24324 1.16727 0.82587 0.81120 0.79659 1.90648 1.52681 1.45216 1.56106 1.45910 1.34442 1.08201 1.51138 1.20776 0.85608 0.96180 0.91814 0.89741 1.21968 0.97463 0.97129 0.99910 1.22385 0.85530 0.96813 0.95143 1.86338 1.43255 1.37706 1.72092 1.22004 0.95458 0.96681 0.97370 1.22399 0.97047 1.00598 0.95347 1.22487 0.96344 0.99184 0.98141 1.22358 0.96910 1.00065 0.96865 1.22194 0.96739 1.02582 0.94372 0.88528 0.85216 0.84196 0.77845 0.91794 0.91254 0.93307 0.92128 0.77829 0.90847 0.91172 0.91585 0.91728 0.91796 0.92010 0.91686 0.91971 0.90866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.31 12.49 55.57 0.69 -18.62 16 2 C 0.03 0.70 5.24 -17.28 -0.09 0.61 16 3 Si 1.07 20.90 29.98 -169.99 -5.10 15.80 16 4 H -0.27 -5.17 7.11 56.52 0.40 -4.77 16 5 H -0.27 -5.05 7.11 56.52 0.40 -4.65 16 6 H -0.27 -5.16 7.11 56.52 0.40 -4.76 16 7 C -0.42 -11.12 8.44 -37.94 -0.32 -11.44 16 8 H 0.11 2.99 6.13 -52.48 -0.32 2.67 16 9 C 0.11 2.89 5.40 -106.21 -0.57 2.32 16 10 C -0.14 -3.32 8.19 -39.12 -0.32 -3.64 16 11 C -0.19 -3.86 11.07 28.86 0.32 -3.54 16 12 S -0.04 -0.75 22.25 -107.50 -2.39 -3.14 16 13 C -0.44 -10.60 6.51 -35.88 -0.23 -10.83 16 14 C 0.60 13.85 6.33 -13.05 -0.08 13.77 16 15 O -0.56 -14.22 11.59 5.14 0.06 -14.16 16 16 N -0.74 -13.69 4.38 -55.25 -0.24 -13.93 16 17 C 0.16 2.55 1.50 -67.93 -0.10 2.44 16 18 H 0.08 1.50 7.55 -51.93 -0.39 1.11 16 19 C -0.13 -1.98 5.14 -26.73 -0.14 -2.12 16 20 C 0.08 1.42 5.65 37.16 0.21 1.63 16 21 O -0.59 -9.83 13.66 -35.23 -0.48 -10.31 16 22 C -0.10 -1.20 2.56 -89.50 -0.23 -1.43 16 23 C -0.12 -1.24 5.23 -25.07 -0.13 -1.37 16 24 C -0.12 -1.19 6.91 -24.74 -0.17 -1.37 16 25 C -0.12 -1.35 6.83 -25.07 -0.17 -1.52 16 26 C -0.12 -1.52 6.19 -25.61 -0.16 -1.68 16 27 H 0.30 7.59 6.23 -40.82 -0.25 7.33 16 28 H 0.13 2.97 6.79 -52.49 -0.36 2.61 16 29 H 0.14 2.42 8.06 -52.49 -0.42 2.00 16 30 H 0.39 6.71 7.68 -40.82 -0.31 6.40 16 31 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.07 0.98 7.13 -51.92 -0.37 0.61 16 33 H 0.05 0.92 7.84 -51.93 -0.41 0.51 16 34 H 0.06 1.29 5.64 -51.93 -0.29 0.99 16 35 H 0.38 4.82 9.12 45.56 0.42 5.23 16 36 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 37 H 0.07 0.79 7.77 -51.93 -0.40 0.38 16 38 H 0.07 0.65 8.14 -51.92 -0.42 0.22 16 39 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 40 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 41 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 44 H 0.07 1.11 7.37 -51.93 -0.38 0.73 16 LS Contribution 359.30 15.07 5.41 5.41 Total: -1.00 -28.41 359.30 -9.92 -38.33 By element: Atomic # 1 Polarization: 24.44 SS G_CDS: -5.68 Total: 18.76 kcal Atomic # 6 Polarization: -15.96 SS G_CDS: -2.19 Total: -18.15 kcal Atomic # 7 Polarization: -33.00 SS G_CDS: 0.45 Total: -32.55 kcal Atomic # 8 Polarization: -24.05 SS G_CDS: -0.42 Total: -24.47 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.10 Total: 15.80 kcal Atomic # 16 Polarization: -0.75 SS G_CDS: -2.39 Total: -3.14 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -28.41 -9.92 -38.33 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889121254.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.076 kcal (2) G-P(sol) polarization free energy of solvation -28.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds