Wall clock time and date at job start Tue Mar 31 2020 14:28:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.49199 * 2 1 4 4 C 1.53094 * 109.48278 * 120.03172 * 2 1 3 5 5 C 1.53183 * 109.16189 * 62.37213 * 4 2 1 6 6 C 1.53178 * 109.11238 * 56.93572 * 5 4 2 7 7 C 1.53102 * 109.15751 * 303.15494 * 6 5 4 8 8 H 1.09004 * 109.41817 * 297.48779 * 7 6 5 9 9 C 1.52998 * 109.48391 * 177.49791 * 7 6 5 10 10 N 1.46500 * 109.47230 * 179.97438 * 9 7 6 11 11 C 1.34777 * 120.00075 * 180.02562 * 10 9 7 12 12 O 1.21764 * 119.99983 * 0.02562 * 11 10 9 13 13 C 1.46242 * 119.99823 * 180.02562 * 11 10 9 14 14 S 1.75662 * 125.23102 * 0.02998 * 13 11 10 15 15 C 1.75467 * 92.09164 * 179.97438 * 14 13 11 16 16 C 1.32768 * 111.36512 * 359.97438 * 15 14 13 17 17 C 1.39550 * 125.22422 * 179.71496 * 13 11 10 18 18 C 1.40540 * 123.71468 * 0.03237 * 17 13 11 19 19 H 1.08002 * 119.99770 * 334.95967 * 18 17 13 20 20 C 1.40306 * 119.99873 * 154.97034 * 18 17 13 21 21 N 1.30642 * 119.99745 * 162.39470 * 20 18 17 22 22 Si 1.86798 * 120.00101 * 342.38393 * 20 18 17 23 23 H 1.48503 * 109.46686 * 94.01039 * 22 20 18 24 24 H 1.48494 * 109.47684 * 214.01344 * 22 20 18 25 25 H 1.48495 * 109.47156 * 334.01739 * 22 20 18 26 26 O 1.42904 * 109.48958 * 57.47070 * 7 6 5 27 27 H 1.09005 * 109.46980 * 299.97202 * 1 2 3 28 28 H 1.09003 * 109.47066 * 59.96867 * 1 2 3 29 29 H 1.08999 * 109.47309 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.46872 * 180.02562 * 3 2 1 31 31 H 1.08998 * 109.47144 * 300.02792 * 3 2 1 32 32 H 1.09001 * 109.47008 * 60.03274 * 3 2 1 33 33 H 1.09000 * 109.52203 * 302.46920 * 4 2 1 34 34 H 1.08994 * 109.52463 * 182.27546 * 4 2 1 35 35 H 1.08996 * 109.54321 * 176.85417 * 5 4 2 36 36 H 1.09003 * 109.54291 * 297.02423 * 5 4 2 37 37 H 1.08998 * 109.51647 * 62.96840 * 6 5 4 38 38 H 1.08995 * 109.52644 * 183.15904 * 6 5 4 39 39 H 1.08995 * 109.47152 * 299.97040 * 9 7 6 40 40 H 1.09003 * 109.46980 * 59.97075 * 9 7 6 41 41 H 0.96998 * 120.00067 * 0.02562 * 10 9 7 42 42 H 1.08004 * 124.31719 * 179.97438 * 15 14 13 43 43 H 1.07998 * 122.78148 * 180.02562 * 16 15 14 44 44 H 0.97007 * 119.99807 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0405 1.4423 0.0000 4 6 2.0406 -0.7223 1.2495 5 6 1.5757 -2.1814 1.2120 6 6 2.0746 -2.8337 -0.0810 7 6 1.5644 -2.0285 -1.2792 8 1 0.4749 -2.0549 -1.2961 9 6 2.1098 -2.6372 -2.5726 10 7 1.6210 -1.8669 -3.7189 11 6 1.9748 -2.2225 -4.9698 12 8 2.7002 -3.1842 -5.1473 13 6 1.4873 -1.4532 -6.1140 14 16 0.4392 -0.0468 -6.0171 15 6 0.4249 0.1427 -7.7615 16 6 1.1593 -0.7903 -8.3554 17 6 1.7884 -1.7198 -7.4503 18 6 2.6112 -2.7798 -7.8681 19 1 3.3554 -3.1825 -7.1969 20 6 2.4661 -3.3146 -9.1571 21 7 3.4211 -4.0407 -9.6743 22 14 0.9074 -2.9885 -10.1335 23 1 1.1098 -1.8059 -11.0086 24 1 0.5896 -4.1741 -10.9692 25 1 -0.2163 -2.7261 -9.1990 26 8 2.0065 -0.6742 -1.1665 27 1 -0.3633 0.5134 0.8903 28 1 -0.3633 0.5143 -0.8897 29 1 -0.3634 -1.0276 -0.0005 30 1 3.1306 1.4419 -0.0005 31 1 1.6770 1.9564 -0.8897 32 1 1.6778 1.9561 0.8903 33 1 1.6421 -0.2359 2.1398 34 1 3.1298 -0.6876 1.2709 35 1 1.9824 -2.7159 2.0705 36 1 0.4867 -2.2181 1.2423 37 1 3.1645 -2.8428 -0.0874 38 1 1.7005 -3.8557 -0.1414 39 1 3.1993 -2.6111 -2.5553 40 1 1.7725 -3.6702 -2.6584 41 1 1.0429 -1.1011 -3.5775 42 1 -0.1127 0.9194 -8.2852 43 1 1.2787 -0.8461 -9.4273 44 1 3.3206 -4.4107 -10.5654 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000890120273.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:28:36 Heat of formation + Delta-G solvation = -77.218252 kcal Electronic energy + Delta-G solvation = -25389.388477 eV Core-core repulsion = 21818.272569 eV Total energy + Delta-G solvation = -3571.115908 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.19475 -38.19254 -36.23798 -34.70212 -33.73954 -33.31224 -32.66848 -29.50514 -28.88303 -27.59073 -26.84356 -25.39405 -22.69051 -21.91305 -21.61464 -20.21763 -19.33971 -18.85038 -17.70394 -16.51624 -15.92703 -15.73390 -15.53164 -15.19199 -14.91843 -14.44606 -14.07519 -13.97802 -13.67451 -13.56739 -13.16154 -12.97903 -12.74311 -12.61069 -12.23844 -12.16983 -12.05735 -11.95314 -11.83064 -11.67639 -11.44292 -11.37215 -11.20147 -11.08776 -10.86647 -10.78227 -10.41344 -10.12836 -9.97877 -9.59277 -9.40244 -9.36934 -8.45010 -8.16563 -7.61575 -7.33281 -7.14447 -4.51606 1.91970 2.86541 2.88905 3.07587 3.12053 3.50990 3.54569 3.58952 3.79674 4.11701 4.45758 4.52931 4.59624 4.68695 4.82629 4.94244 5.08482 5.16318 5.21192 5.24071 5.37351 5.44242 5.50621 5.64183 5.65694 5.72901 5.76749 5.78304 5.80059 5.87694 5.97774 6.05896 6.11585 6.16926 6.20272 6.30542 6.68637 6.83667 6.92432 7.18900 7.29055 7.41849 7.68967 8.28416 8.43855 8.58263 8.83555 9.63384 9.83499 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.021377 B = 0.003316 C = 0.003005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1309.497775 B = 8442.512713 C = 9314.072741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.110 3.890 3 C -0.138 4.138 4 C -0.142 4.142 5 C -0.122 4.122 6 C -0.148 4.148 7 C 0.079 3.921 8 H 0.064 0.936 9 C 0.139 3.861 10 N -0.745 5.745 11 C 0.599 3.401 12 O -0.559 6.559 13 C -0.425 4.425 14 S -0.017 6.017 15 C -0.179 4.179 16 C -0.165 4.165 17 C 0.108 3.892 18 C -0.363 4.363 19 H 0.123 0.877 20 C 0.078 3.922 21 N -0.771 5.771 22 Si 0.909 3.091 23 H -0.265 1.265 24 H -0.282 1.282 25 H -0.241 1.241 26 O -0.361 6.361 27 H 0.063 0.937 28 H 0.066 0.934 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.065 0.935 32 H 0.067 0.933 33 H 0.069 0.931 34 H 0.071 0.929 35 H 0.066 0.934 36 H 0.065 0.935 37 H 0.074 0.926 38 H 0.075 0.925 39 H 0.065 0.935 40 H 0.072 0.928 41 H 0.392 0.608 42 H 0.143 0.857 43 H 0.125 0.875 44 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.376 6.548 15.888 18.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.071 3.929 3 C -0.195 4.195 4 C -0.180 4.180 5 C -0.159 4.159 6 C -0.186 4.186 7 C 0.021 3.979 8 H 0.082 0.918 9 C 0.014 3.986 10 N -0.398 5.398 11 C 0.395 3.605 12 O -0.441 6.441 13 C -0.544 4.544 14 S 0.240 5.760 15 C -0.313 4.313 16 C -0.199 4.199 17 C 0.097 3.903 18 C -0.393 4.393 19 H 0.140 0.860 20 C -0.147 4.147 21 N -0.393 5.393 22 Si 0.735 3.265 23 H -0.191 1.191 24 H -0.209 1.209 25 H -0.164 1.164 26 O -0.280 6.280 27 H 0.082 0.918 28 H 0.085 0.915 29 H 0.081 0.919 30 H 0.082 0.918 31 H 0.085 0.915 32 H 0.086 0.914 33 H 0.088 0.912 34 H 0.089 0.911 35 H 0.084 0.916 36 H 0.083 0.917 37 H 0.093 0.907 38 H 0.094 0.906 39 H 0.083 0.917 40 H 0.090 0.910 41 H 0.225 0.775 42 H 0.161 0.839 43 H 0.142 0.858 44 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -6.236 6.541 16.647 18.942 hybrid contribution -0.390 -0.360 -1.463 1.557 sum -6.626 6.180 15.184 17.682 Atomic orbital electron populations 1.22472 0.95923 1.02630 1.02763 1.21455 0.93025 0.92846 0.85599 1.21747 1.01971 0.93394 1.02378 1.22185 1.01813 0.95953 0.98033 1.21617 1.00997 0.95644 0.97676 1.22132 1.02354 0.99659 0.94468 1.22364 0.98310 0.82601 0.94612 0.91797 1.21102 0.99616 0.94812 0.83065 1.45672 1.54859 1.34030 1.05264 1.16779 0.79614 0.83263 0.80879 1.90700 1.39126 1.29393 1.84920 1.22461 1.25414 1.10757 0.95775 1.82810 1.55469 1.33585 1.04149 1.24940 1.05295 1.03547 0.97547 1.21481 1.01280 0.97389 0.99720 1.17877 0.90274 0.92939 0.89201 1.19818 1.12521 1.10028 0.96917 0.85960 1.26540 0.97750 0.93064 0.97300 1.69602 1.31142 1.22679 1.15898 0.86449 0.82860 0.77783 0.79443 1.19144 1.20901 1.16363 1.88072 1.73439 1.23970 1.42540 0.91779 0.91523 0.91925 0.91848 0.91548 0.91442 0.91209 0.91073 0.91558 0.91664 0.90691 0.90596 0.91658 0.91008 0.77462 0.83895 0.85774 0.89742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.70 7.93 37.16 0.29 -1.41 16 2 C 0.11 1.16 1.11 -90.57 -0.10 1.06 16 3 C -0.14 -1.32 8.85 37.16 0.33 -1.00 16 4 C -0.14 -1.28 4.92 -26.59 -0.13 -1.41 16 5 C -0.12 -1.07 5.71 -26.54 -0.15 -1.22 16 6 C -0.15 -1.56 5.42 -26.59 -0.14 -1.70 16 7 C 0.08 1.03 2.40 -26.68 -0.06 0.97 16 8 H 0.06 0.80 6.34 -51.93 -0.33 0.47 16 9 C 0.14 2.34 5.37 -4.04 -0.02 2.32 16 10 N -0.74 -14.93 5.44 -61.75 -0.34 -15.27 16 11 C 0.60 14.99 7.76 -13.05 -0.10 14.89 16 12 O -0.56 -15.87 14.47 5.13 0.07 -15.80 16 13 C -0.43 -10.70 6.51 -35.88 -0.23 -10.93 16 14 S -0.02 -0.35 22.25 -107.50 -2.39 -2.75 16 15 C -0.18 -3.63 11.07 28.86 0.32 -3.31 16 16 C -0.17 -3.79 7.55 -39.12 -0.30 -4.08 16 17 C 0.11 2.83 5.27 -106.21 -0.56 2.27 16 18 C -0.36 -10.22 8.99 -37.94 -0.34 -10.56 16 19 H 0.12 3.86 6.30 -52.49 -0.33 3.53 16 20 C 0.08 2.01 5.48 -17.28 -0.09 1.91 16 21 N -0.77 -20.08 13.92 55.57 0.77 -19.31 16 22 Si 0.91 19.63 24.53 -169.99 -4.17 15.46 16 23 H -0.27 -5.34 6.63 56.52 0.37 -4.96 16 24 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 25 H -0.24 -5.35 6.73 56.52 0.38 -4.97 16 26 O -0.36 -5.02 9.62 -35.23 -0.34 -5.36 16 27 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 29 H 0.06 0.59 4.98 -51.93 -0.26 0.33 16 30 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 34 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 36 H 0.06 0.54 6.62 -51.93 -0.34 0.19 16 37 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 40 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 41 H 0.39 7.30 7.43 -40.82 -0.30 7.00 16 42 H 0.14 2.35 8.06 -52.48 -0.42 1.93 16 43 H 0.12 2.69 4.55 -52.49 -0.24 2.45 16 44 H 0.29 6.71 8.29 -40.82 -0.34 6.37 16 LS Contribution 355.32 15.07 5.35 5.35 Total: -1.00 -30.61 355.32 -8.81 -39.42 By element: Atomic # 1 Polarization: 16.92 SS G_CDS: -6.48 Total: 10.43 kcal Atomic # 6 Polarization: -10.90 SS G_CDS: -1.30 Total: -12.20 kcal Atomic # 7 Polarization: -35.02 SS G_CDS: 0.44 Total: -34.58 kcal Atomic # 8 Polarization: -20.89 SS G_CDS: -0.26 Total: -21.15 kcal Atomic # 14 Polarization: 19.63 SS G_CDS: -4.17 Total: 15.46 kcal Atomic # 16 Polarization: -0.35 SS G_CDS: -2.39 Total: -2.75 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -30.61 -8.81 -39.42 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890120273.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.797 kcal (2) G-P(sol) polarization free energy of solvation -30.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds