Wall clock time and date at job start Tue Mar 31 2020 14:28:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.49199 * 2 1 4 4 C 1.53094 * 109.48278 * 120.03172 * 2 1 3 5 5 C 1.53183 * 109.16189 * 62.37213 * 4 2 1 6 6 C 1.53178 * 109.11238 * 56.93572 * 5 4 2 7 7 C 1.53102 * 109.15751 * 303.15494 * 6 5 4 8 8 H 1.09004 * 109.41817 * 297.48779 * 7 6 5 9 9 C 1.52998 * 109.48391 * 177.49791 * 7 6 5 10 10 N 1.46500 * 109.47230 * 179.97438 * 9 7 6 11 11 C 1.34777 * 120.00075 * 180.02562 * 10 9 7 12 12 O 1.21764 * 119.99983 * 0.02562 * 11 10 9 13 13 C 1.46242 * 119.99823 * 180.02562 * 11 10 9 14 14 S 1.75662 * 125.23102 * 0.02998 * 13 11 10 15 15 C 1.75467 * 92.09164 * 179.97438 * 14 13 11 16 16 C 1.32768 * 111.36512 * 359.97438 * 15 14 13 17 17 C 1.39550 * 125.22422 * 179.71496 * 13 11 10 18 18 C 1.40540 * 123.71468 * 0.03237 * 17 13 11 19 19 H 1.08002 * 119.99770 * 334.95967 * 18 17 13 20 20 C 1.40306 * 119.99873 * 154.97034 * 18 17 13 21 21 N 1.30642 * 119.99745 * 162.39470 * 20 18 17 22 22 Si 1.86798 * 120.00101 * 342.38393 * 20 18 17 23 23 H 1.48503 * 109.46686 * 94.01039 * 22 20 18 24 24 H 1.48494 * 109.47684 * 214.01344 * 22 20 18 25 25 H 1.48495 * 109.47156 * 334.01739 * 22 20 18 26 26 O 1.42904 * 109.48958 * 57.47070 * 7 6 5 27 27 H 1.09005 * 109.46980 * 299.97202 * 1 2 3 28 28 H 1.09003 * 109.47066 * 59.96867 * 1 2 3 29 29 H 1.08999 * 109.47309 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.46872 * 180.02562 * 3 2 1 31 31 H 1.08998 * 109.47144 * 300.02792 * 3 2 1 32 32 H 1.09001 * 109.47008 * 60.03274 * 3 2 1 33 33 H 1.09000 * 109.52203 * 302.46920 * 4 2 1 34 34 H 1.08994 * 109.52463 * 182.27546 * 4 2 1 35 35 H 1.08996 * 109.54321 * 176.85417 * 5 4 2 36 36 H 1.09003 * 109.54291 * 297.02423 * 5 4 2 37 37 H 1.08998 * 109.51647 * 62.96840 * 6 5 4 38 38 H 1.08995 * 109.52644 * 183.15904 * 6 5 4 39 39 H 1.08995 * 109.47152 * 299.97040 * 9 7 6 40 40 H 1.09003 * 109.46980 * 59.97075 * 9 7 6 41 41 H 0.96998 * 120.00067 * 0.02562 * 10 9 7 42 42 H 1.08004 * 124.31719 * 179.97438 * 15 14 13 43 43 H 1.07998 * 122.78148 * 180.02562 * 16 15 14 44 44 H 0.97007 * 119.99807 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0405 1.4423 0.0000 4 6 2.0406 -0.7223 1.2495 5 6 1.5757 -2.1814 1.2120 6 6 2.0746 -2.8337 -0.0810 7 6 1.5644 -2.0285 -1.2792 8 1 0.4749 -2.0549 -1.2961 9 6 2.1098 -2.6372 -2.5726 10 7 1.6210 -1.8669 -3.7189 11 6 1.9748 -2.2225 -4.9698 12 8 2.7002 -3.1842 -5.1473 13 6 1.4873 -1.4532 -6.1140 14 16 0.4392 -0.0468 -6.0171 15 6 0.4249 0.1427 -7.7615 16 6 1.1593 -0.7903 -8.3554 17 6 1.7884 -1.7198 -7.4503 18 6 2.6112 -2.7798 -7.8681 19 1 3.3554 -3.1825 -7.1969 20 6 2.4661 -3.3146 -9.1571 21 7 3.4211 -4.0407 -9.6743 22 14 0.9074 -2.9885 -10.1335 23 1 1.1098 -1.8059 -11.0086 24 1 0.5896 -4.1741 -10.9692 25 1 -0.2163 -2.7261 -9.1990 26 8 2.0065 -0.6742 -1.1665 27 1 -0.3633 0.5134 0.8903 28 1 -0.3633 0.5143 -0.8897 29 1 -0.3634 -1.0276 -0.0005 30 1 3.1306 1.4419 -0.0005 31 1 1.6770 1.9564 -0.8897 32 1 1.6778 1.9561 0.8903 33 1 1.6421 -0.2359 2.1398 34 1 3.1298 -0.6876 1.2709 35 1 1.9824 -2.7159 2.0705 36 1 0.4867 -2.2181 1.2423 37 1 3.1645 -2.8428 -0.0874 38 1 1.7005 -3.8557 -0.1414 39 1 3.1993 -2.6111 -2.5553 40 1 1.7725 -3.6702 -2.6584 41 1 1.0429 -1.1011 -3.5775 42 1 -0.1127 0.9194 -8.2852 43 1 1.2787 -0.8461 -9.4273 44 1 3.3206 -4.4107 -10.5654 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000890120273.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:28:35 Heat of formation + Delta-G solvation = -97.999235 kcal Electronic energy + Delta-G solvation = -25390.289608 eV Core-core repulsion = 21818.272569 eV Total energy + Delta-G solvation = -3572.017039 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.16554 -40.05282 -38.04063 -36.09345 -35.21847 -34.60438 -34.02756 -31.17774 -30.25318 -28.54530 -28.23647 -26.66404 -24.02462 -23.28648 -22.73667 -21.98028 -20.78861 -20.19119 -19.46462 -17.75732 -17.50672 -17.32800 -16.70984 -16.45163 -16.14797 -15.93818 -15.65290 -15.38458 -15.05718 -14.95543 -14.55184 -14.17186 -13.99798 -13.82607 -13.72810 -13.49570 -13.32299 -13.04993 -13.02948 -12.90237 -12.77970 -12.71174 -12.53361 -12.25184 -12.04371 -11.86077 -11.78615 -11.66944 -11.35951 -11.18714 -11.00309 -10.50780 -10.24061 -9.98111 -9.45849 -9.09971 -9.05393 -6.52137 0.11273 1.17438 1.18750 1.35184 1.44480 1.62960 1.70610 2.06339 2.44632 2.51174 2.68459 3.17910 3.67488 3.83289 3.85632 3.92026 4.08223 4.11915 4.22983 4.32483 4.36889 4.44598 4.51753 4.63179 4.69360 4.71003 4.81613 4.86326 4.91280 4.94172 5.02509 5.05071 5.05863 5.13701 5.15302 5.19062 5.24875 5.33709 5.37802 5.50872 5.67835 5.79809 6.20672 6.39807 6.48378 6.60804 6.92778 7.70111 8.00238 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.021377 B = 0.003316 C = 0.003005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1309.497775 B = 8442.512713 C = 9314.072741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.100 3.900 3 C -0.137 4.137 4 C -0.139 4.139 5 C -0.118 4.118 6 C -0.146 4.146 7 C 0.090 3.910 8 H 0.076 0.924 9 C 0.134 3.866 10 N -0.728 5.728 11 C 0.586 3.414 12 O -0.605 6.605 13 C -0.461 4.461 14 S 0.049 5.951 15 C -0.153 4.153 16 C -0.198 4.198 17 C 0.097 3.903 18 C -0.412 4.412 19 H 0.064 0.936 20 C 0.040 3.960 21 N -0.814 5.814 22 Si 0.973 3.027 23 H -0.232 1.232 24 H -0.269 1.269 25 H -0.249 1.249 26 O -0.390 6.390 27 H 0.086 0.914 28 H 0.055 0.945 29 H 0.063 0.937 30 H 0.053 0.947 31 H 0.054 0.946 32 H 0.094 0.906 33 H 0.093 0.907 34 H 0.061 0.939 35 H 0.082 0.918 36 H 0.076 0.924 37 H 0.063 0.937 38 H 0.086 0.914 39 H 0.044 0.956 40 H 0.071 0.929 41 H 0.401 0.599 42 H 0.196 0.804 43 H 0.139 0.861 44 H 0.304 0.696 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.678 9.082 16.901 21.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.061 3.939 3 C -0.194 4.194 4 C -0.177 4.177 5 C -0.155 4.155 6 C -0.185 4.185 7 C 0.032 3.968 8 H 0.093 0.907 9 C 0.011 3.989 10 N -0.380 5.380 11 C 0.382 3.618 12 O -0.491 6.491 13 C -0.580 4.580 14 S 0.307 5.693 15 C -0.288 4.288 16 C -0.231 4.231 17 C 0.086 3.914 18 C -0.443 4.443 19 H 0.082 0.918 20 C -0.180 4.180 21 N -0.438 5.438 22 Si 0.793 3.207 23 H -0.156 1.156 24 H -0.195 1.195 25 H -0.172 1.172 26 O -0.311 6.311 27 H 0.105 0.895 28 H 0.074 0.926 29 H 0.082 0.918 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.112 0.888 33 H 0.112 0.888 34 H 0.080 0.920 35 H 0.101 0.899 36 H 0.095 0.905 37 H 0.082 0.918 38 H 0.104 0.896 39 H 0.063 0.937 40 H 0.089 0.911 41 H 0.236 0.764 42 H 0.213 0.787 43 H 0.157 0.843 44 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -9.537 9.108 17.713 22.083 hybrid contribution 0.657 -1.043 -1.546 1.978 sum -8.880 8.064 16.167 20.131 Atomic orbital electron populations 1.22452 0.94762 1.02882 1.03393 1.21764 0.94019 0.93038 0.85082 1.21786 1.01397 0.93109 1.03147 1.22175 1.01320 0.96148 0.98057 1.21623 1.01710 0.95386 0.96761 1.22131 1.01750 1.00072 0.94514 1.22210 0.98539 0.82904 0.93118 0.90671 1.21286 0.98560 0.95029 0.84070 1.45511 1.53851 1.34011 1.04648 1.17148 0.79257 0.82880 0.82546 1.90678 1.41116 1.31426 1.85919 1.23018 1.26132 1.13003 0.95829 1.82469 1.52671 1.29723 1.04479 1.25583 1.02950 1.02911 0.97376 1.21426 1.03452 0.98042 1.00194 1.18225 0.89872 0.92702 0.90630 1.19605 1.13965 1.12861 0.97883 0.91768 1.27392 1.00949 0.92239 0.97437 1.69623 1.33096 1.24023 1.17079 0.85493 0.77697 0.79371 0.78111 1.15640 1.19478 1.17234 1.88025 1.74207 1.24202 1.44621 0.89491 0.92580 0.91825 0.92816 0.92665 0.88760 0.88808 0.92032 0.89929 0.90501 0.91775 0.89565 0.93737 0.91134 0.76386 0.78656 0.84345 0.88451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.86 7.93 71.98 0.57 -2.29 16 2 C 0.10 1.92 1.11 -10.76 -0.01 1.91 16 3 C -0.14 -2.41 8.85 71.98 0.64 -1.78 16 4 C -0.14 -2.15 4.92 30.69 0.15 -2.00 16 5 C -0.12 -1.74 5.71 30.72 0.18 -1.57 16 6 C -0.15 -2.95 5.42 30.69 0.17 -2.78 16 7 C 0.09 2.31 2.40 30.63 0.07 2.39 16 8 H 0.08 1.76 6.34 -2.38 -0.02 1.75 16 9 C 0.13 4.73 5.37 86.38 0.46 5.20 16 10 N -0.73 -30.03 5.44 -467.47 -2.54 -32.57 16 11 C 0.59 30.81 7.76 86.32 0.67 31.48 16 12 O -0.61 -37.24 14.47 -4.55 -0.07 -37.30 16 13 C -0.46 -23.61 6.51 24.67 0.16 -23.45 16 14 S 0.05 1.88 22.25 -56.49 -1.26 0.62 16 15 C -0.15 -5.59 11.07 66.64 0.74 -4.85 16 16 C -0.20 -8.71 7.55 22.60 0.17 -8.54 16 17 C 0.10 5.22 5.27 -20.89 -0.11 5.11 16 18 C -0.41 -24.88 8.99 23.33 0.21 -24.67 16 19 H 0.06 4.50 6.30 -2.91 -0.02 4.48 16 20 C 0.04 2.14 5.48 85.37 0.47 2.61 16 21 N -0.81 -44.67 13.92 21.89 0.30 -44.37 16 22 Si 0.97 40.09 24.53 68.60 1.68 41.77 16 23 H -0.23 -8.29 6.63 99.48 0.66 -7.63 16 24 H -0.27 -10.34 7.11 99.48 0.71 -9.63 16 25 H -0.25 -10.49 6.73 99.48 0.67 -9.82 16 26 O -0.39 -10.66 9.62 -148.98 -1.43 -12.10 16 27 H 0.09 1.00 8.14 -2.38 -0.02 0.98 16 28 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 29 H 0.06 1.00 4.98 -2.39 -0.01 0.99 16 30 H 0.05 1.03 8.14 -2.38 -0.02 1.01 16 31 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 32 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 33 H 0.09 1.02 8.14 -2.39 -0.02 1.01 16 34 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 35 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 36 H 0.08 1.00 6.62 -2.39 -0.02 0.98 16 37 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 38 H 0.09 1.54 8.14 -2.39 -0.02 1.53 16 39 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 40 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 41 H 0.40 14.87 7.43 -92.71 -0.69 14.18 16 42 H 0.20 5.08 8.06 -2.91 -0.02 5.06 16 43 H 0.14 5.61 4.55 -2.91 -0.01 5.60 16 44 H 0.30 14.49 8.29 -92.70 -0.77 13.72 16 Total: -1.00 -73.68 355.32 1.47 -72.21 By element: Atomic # 1 Polarization: 34.74 SS G_CDS: 0.25 Total: 34.98 kcal Atomic # 6 Polarization: -27.78 SS G_CDS: 4.53 Total: -23.25 kcal Atomic # 7 Polarization: -74.70 SS G_CDS: -2.24 Total: -76.94 kcal Atomic # 8 Polarization: -47.90 SS G_CDS: -1.50 Total: -49.40 kcal Atomic # 14 Polarization: 40.09 SS G_CDS: 1.68 Total: 41.77 kcal Atomic # 16 Polarization: 1.88 SS G_CDS: -1.26 Total: 0.62 kcal Total: -73.68 1.47 -72.21 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890120273.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.787 kcal (2) G-P(sol) polarization free energy of solvation -73.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.213 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds