Wall clock time and date at job start Tue Mar 31 2020 14:28:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.48177 * 2 1 4 4 C 1.53088 * 109.48368 * 239.96412 * 2 1 3 5 5 C 1.53180 * 109.16093 * 297.62593 * 4 2 1 6 6 C 1.53165 * 109.03895 * 303.01818 * 5 4 2 7 7 C 1.53095 * 109.16412 * 56.98026 * 6 5 4 8 8 H 1.08996 * 109.48791 * 62.37980 * 7 6 5 9 9 C 1.53003 * 109.48223 * 182.41062 * 7 6 5 10 10 N 1.46497 * 109.47489 * 184.94311 * 9 7 6 11 11 C 1.34767 * 120.00358 * 180.02562 * 10 9 7 12 12 O 1.21760 * 120.00056 * 359.97438 * 11 10 9 13 13 C 1.46238 * 120.00241 * 179.97438 * 11 10 9 14 14 S 1.75665 * 125.22796 * 0.02562 * 13 11 10 15 15 C 1.75466 * 92.09446 * 179.73564 * 14 13 11 16 16 C 1.32762 * 111.36470 * 359.97438 * 15 14 13 17 17 C 1.39549 * 125.22973 * 179.71554 * 13 11 10 18 18 C 1.40534 * 123.71661 * 0.24151 * 17 13 11 19 19 H 1.08004 * 119.99829 * 336.49623 * 18 17 13 20 20 C 1.40308 * 120.00384 * 156.49801 * 18 17 13 21 21 N 1.30640 * 119.99601 * 350.15049 * 20 18 17 22 22 Si 1.86793 * 120.00188 * 170.15301 * 20 18 17 23 23 H 1.48497 * 109.47262 * 89.99985 * 22 20 18 24 24 H 1.48497 * 109.47161 * 209.99849 * 22 20 18 25 25 H 1.48497 * 109.47330 * 329.99890 * 22 20 18 26 26 O 1.42904 * 109.41545 * 302.39011 * 7 6 5 27 27 H 1.09000 * 109.46788 * 299.98121 * 1 2 3 28 28 H 1.08998 * 109.46692 * 59.97699 * 1 2 3 29 29 H 1.08998 * 109.46851 * 179.97438 * 1 2 3 30 30 H 1.08992 * 109.47109 * 180.02562 * 3 2 1 31 31 H 1.09003 * 109.46871 * 300.02161 * 3 2 1 32 32 H 1.09003 * 109.46901 * 60.02266 * 3 2 1 33 33 H 1.09002 * 109.51916 * 57.52995 * 4 2 1 34 34 H 1.08996 * 109.52705 * 177.71886 * 4 2 1 35 35 H 1.09009 * 109.54195 * 62.89020 * 5 4 2 36 36 H 1.09004 * 109.54185 * 183.05507 * 5 4 2 37 37 H 1.09009 * 109.52301 * 297.07593 * 6 5 4 38 38 H 1.09001 * 109.52636 * 176.88861 * 6 5 4 39 39 H 1.09005 * 109.46984 * 64.94297 * 9 7 6 40 40 H 1.09000 * 109.47322 * 304.94583 * 9 7 6 41 41 H 0.97001 * 119.99353 * 359.97438 * 10 9 7 42 42 H 1.08005 * 124.31931 * 180.02562 * 15 14 13 43 43 H 1.07997 * 122.78770 * 180.02562 * 16 15 14 44 44 H 0.96994 * 119.99895 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0403 1.4424 0.0000 4 6 2.0406 -0.7224 -1.2494 5 6 1.5758 -2.1815 -1.2118 6 6 2.0765 -2.8322 0.0812 7 6 1.5645 -2.0283 1.2793 8 1 0.4750 -2.0548 1.2962 9 6 2.1099 -2.6369 2.5728 10 7 1.5270 -1.9420 3.7233 11 6 1.8648 -2.3102 4.9749 12 8 2.6540 -3.2208 5.1496 13 6 1.2834 -1.6162 6.1233 14 16 0.1354 -0.2898 6.0308 15 6 0.0431 -0.1628 7.7784 16 6 0.8234 -1.0591 8.3703 17 6 1.5506 -1.9098 7.4611 18 6 2.4307 -2.9236 7.8765 19 1 2.6476 -3.7530 7.2196 20 6 3.0275 -2.8585 9.1447 21 7 2.9218 -1.7712 9.8612 22 14 3.9733 -4.3262 9.8084 23 1 5.3987 -4.2197 9.4059 24 1 3.8776 -4.3477 11.2901 25 1 3.3954 -5.5780 9.2569 26 8 2.0066 -0.6740 1.1666 27 1 -0.3633 0.5136 0.8902 28 1 -0.3632 0.5142 -0.8898 29 1 -0.3633 -1.0277 -0.0005 30 1 3.1302 1.4422 -0.0005 31 1 1.6767 1.9564 -0.8898 32 1 1.6774 1.9562 0.8902 33 1 1.6421 -0.2360 -2.1398 34 1 3.1298 -0.6875 -1.2708 35 1 0.4867 -2.2181 -1.2405 36 1 1.9813 -2.7156 -2.0712 37 1 3.1665 -2.8400 0.0868 38 1 1.7037 -3.8546 0.1426 39 1 3.1945 -2.5305 2.5954 40 1 1.8476 -3.6940 2.6158 41 1 0.8986 -1.2164 3.5841 42 1 -0.5708 0.5526 8.3054 43 1 0.9068 -1.1439 9.4437 44 1 3.3347 -1.7260 10.7377 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000890120275.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:28:39 Heat of formation + Delta-G solvation = -82.400502 kcal Electronic energy + Delta-G solvation = -25316.096199 eV Core-core repulsion = 21744.755572 eV Total energy + Delta-G solvation = -3571.340628 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.17615 -38.13879 -36.03641 -34.67453 -33.72452 -33.00955 -32.65306 -29.39056 -28.68791 -27.55927 -26.61580 -25.25478 -22.73669 -21.94500 -21.54548 -19.89972 -19.27151 -18.71220 -17.55570 -16.48928 -15.81745 -15.69194 -15.42428 -15.18223 -14.84003 -14.36465 -13.99568 -13.93000 -13.74000 -13.40982 -12.92632 -12.71774 -12.60404 -12.41800 -12.16669 -12.04958 -11.96354 -11.89832 -11.71474 -11.68824 -11.37596 -11.21809 -11.09012 -11.07324 -10.88983 -10.77214 -10.39458 -10.10459 -10.09365 -9.59943 -9.36592 -9.19506 -8.37754 -8.14054 -7.43493 -7.08712 -6.99737 -4.47455 2.21305 2.99351 3.02503 3.10403 3.18188 3.61339 3.69138 3.85001 3.90000 4.14360 4.51315 4.54480 4.61416 4.69897 4.84818 4.96110 5.10212 5.22423 5.25283 5.31566 5.39519 5.46366 5.52457 5.65546 5.67919 5.74053 5.78538 5.81704 5.88355 5.98937 6.06747 6.09860 6.15687 6.18731 6.30698 6.73750 6.89092 7.21466 7.25391 7.32304 7.41565 7.53235 7.76179 8.41310 8.52754 8.66178 8.85334 9.66681 9.91498 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.018221 B = 0.003302 C = 0.002941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1536.311245 B = 8477.377701 C = 9516.796278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.110 3.890 3 C -0.138 4.138 4 C -0.142 4.142 5 C -0.122 4.122 6 C -0.148 4.148 7 C 0.079 3.921 8 H 0.065 0.935 9 C 0.138 3.862 10 N -0.745 5.745 11 C 0.601 3.399 12 O -0.567 6.567 13 C -0.428 4.428 14 S -0.050 6.050 15 C -0.207 4.207 16 C -0.099 4.099 17 C 0.140 3.860 18 C -0.378 4.378 19 H 0.111 0.889 20 C 0.067 3.933 21 N -0.780 5.780 22 Si 0.925 3.075 23 H -0.264 1.264 24 H -0.275 1.275 25 H -0.255 1.255 26 O -0.361 6.361 27 H 0.066 0.934 28 H 0.063 0.937 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.067 0.933 32 H 0.066 0.934 33 H 0.069 0.931 34 H 0.070 0.930 35 H 0.065 0.935 36 H 0.066 0.934 37 H 0.074 0.926 38 H 0.075 0.925 39 H 0.065 0.935 40 H 0.071 0.929 41 H 0.392 0.608 42 H 0.137 0.863 43 H 0.145 0.855 44 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.841 2.579 -15.661 16.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.071 3.929 3 C -0.195 4.195 4 C -0.180 4.180 5 C -0.159 4.159 6 C -0.186 4.186 7 C 0.021 3.979 8 H 0.082 0.918 9 C 0.014 3.986 10 N -0.398 5.398 11 C 0.397 3.603 12 O -0.450 6.450 13 C -0.547 4.547 14 S 0.205 5.795 15 C -0.341 4.341 16 C -0.132 4.132 17 C 0.129 3.871 18 C -0.409 4.409 19 H 0.129 0.871 20 C -0.154 4.154 21 N -0.404 5.404 22 Si 0.749 3.251 23 H -0.189 1.189 24 H -0.200 1.200 25 H -0.179 1.179 26 O -0.280 6.280 27 H 0.085 0.915 28 H 0.082 0.918 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.086 0.914 32 H 0.085 0.915 33 H 0.088 0.912 34 H 0.089 0.911 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.093 0.907 38 H 0.094 0.906 39 H 0.084 0.916 40 H 0.089 0.911 41 H 0.226 0.774 42 H 0.155 0.845 43 H 0.162 0.838 44 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -3.765 2.895 -16.353 17.029 hybrid contribution 0.560 -0.828 1.241 1.593 sum -3.205 2.067 -15.112 15.586 Atomic orbital electron populations 1.22471 0.95903 1.02624 1.02791 1.21457 0.93055 0.92851 0.85580 1.21748 1.01943 0.93409 1.02398 1.22185 1.01790 0.95954 0.98051 1.21619 1.01013 0.95658 0.97650 1.22129 1.02313 0.99645 0.94498 1.22362 0.98336 0.82600 0.94587 0.91765 1.21087 0.98796 0.95642 0.83100 1.45707 1.49710 1.39320 1.05088 1.16835 0.80281 0.82201 0.80950 1.90644 1.37094 1.32075 1.85232 1.22601 1.22999 1.13618 0.95452 1.82716 1.51504 1.39614 1.05624 1.24948 1.07180 1.05605 0.96402 1.21722 0.94895 0.95287 1.01255 1.17930 0.90451 0.90320 0.88380 1.20023 1.17253 1.05782 0.97881 0.87104 1.26372 0.95707 0.97263 0.96069 1.69675 1.33302 1.26442 1.10992 0.86004 0.80156 0.81285 0.77675 1.18930 1.19988 1.17899 1.88082 1.73396 1.24000 1.42547 0.91480 0.91782 0.91936 0.91872 0.91442 0.91526 0.91210 0.91092 0.91648 0.91565 0.90708 0.90645 0.91642 0.91062 0.77436 0.84549 0.83761 0.90168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.77 7.93 37.16 0.29 -1.47 16 2 C 0.11 1.20 1.11 -90.57 -0.10 1.10 16 3 C -0.14 -1.38 8.85 37.16 0.33 -1.05 16 4 C -0.14 -1.31 4.92 -26.59 -0.13 -1.44 16 5 C -0.12 -1.08 5.72 -26.55 -0.15 -1.24 16 6 C -0.15 -1.58 5.42 -26.60 -0.14 -1.72 16 7 C 0.08 1.05 2.35 -26.68 -0.06 0.99 16 8 H 0.06 0.82 6.34 -51.93 -0.33 0.49 16 9 C 0.14 2.36 5.34 -4.04 -0.02 2.34 16 10 N -0.74 -15.26 5.50 -61.75 -0.34 -15.60 16 11 C 0.60 15.26 7.76 -13.05 -0.10 15.16 16 12 O -0.57 -15.92 14.45 5.14 0.07 -15.85 16 13 C -0.43 -11.16 6.51 -35.88 -0.23 -11.39 16 14 S -0.05 -1.09 22.25 -107.50 -2.39 -3.49 16 15 C -0.21 -4.61 11.07 28.86 0.32 -4.29 16 16 C -0.10 -2.46 9.04 -39.12 -0.35 -2.82 16 17 C 0.14 3.83 5.68 -106.21 -0.60 3.23 16 18 C -0.38 -10.42 8.52 -37.94 -0.32 -10.74 16 19 H 0.11 3.20 6.04 -52.48 -0.32 2.88 16 20 C 0.07 1.67 5.39 -17.28 -0.09 1.58 16 21 N -0.78 -19.19 10.82 55.57 0.60 -18.59 16 22 Si 0.93 18.87 29.57 -169.99 -5.03 13.85 16 23 H -0.26 -5.42 7.11 56.52 0.40 -5.02 16 24 H -0.27 -5.28 7.11 56.52 0.40 -4.88 16 25 H -0.26 -5.25 7.11 56.52 0.40 -4.84 16 26 O -0.36 -5.17 9.82 -35.23 -0.35 -5.51 16 27 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.06 0.60 4.97 -51.93 -0.26 0.35 16 30 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 35 H 0.06 0.55 6.62 -51.92 -0.34 0.21 16 36 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.07 0.83 8.14 -51.92 -0.42 0.41 16 38 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 39 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 40 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 41 H 0.39 7.57 7.55 -40.82 -0.31 7.26 16 42 H 0.14 2.56 8.06 -52.48 -0.42 2.14 16 43 H 0.15 3.54 6.40 -52.49 -0.34 3.21 16 44 H 0.29 6.33 8.29 -40.82 -0.34 5.99 16 LS Contribution 361.31 15.07 5.44 5.44 Total: -1.00 -30.11 361.31 -9.88 -40.00 By element: Atomic # 1 Polarization: 18.03 SS G_CDS: -6.52 Total: 11.51 kcal Atomic # 6 Polarization: -10.39 SS G_CDS: -1.38 Total: -11.76 kcal Atomic # 7 Polarization: -34.45 SS G_CDS: 0.26 Total: -34.19 kcal Atomic # 8 Polarization: -21.09 SS G_CDS: -0.27 Total: -21.36 kcal Atomic # 14 Polarization: 18.87 SS G_CDS: -5.03 Total: 13.85 kcal Atomic # 16 Polarization: -1.09 SS G_CDS: -2.39 Total: -3.49 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -30.11 -9.88 -40.00 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890120275.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.403 kcal (2) G-P(sol) polarization free energy of solvation -30.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds